CmoCh02G017060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G017060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr02: 9775791 .. 9776966 (-)
RNA-Seq Expression	CmoCh02G017060
Synteny	CmoCh02G017060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGAAAATTCCTCCGCCCGGTCCTCTCAGCTTCCCGTAAACGCAATCCCCTTTCATCACTGTTTCAATCTCTTCCCAATCCCATTCTTCCTTACAATCTCCACCGCCGTTCTCTTTGCTCGCCATCACCATCCACTGTTCTTCCTCCTCAAACCCCCGAAAATTTTGACCTCCCAATCCAAAAAGTTCGCTCCCAAACTCCTCTCGAGAAGCAATTCGAAACATGGATCCAAAAGCTCAAGCCCGGATTCTCCCCTTCCGATGTCAACGAGGCTTTGCAAGCCCAATCGGACCCCGATCTCGCCCTCGATCTCTTCCGGTGGACGGCTCAACAGCGCGGCTATAAACACAACGATTTAACCTATCTAACAATCATTAAGATCCTAATTTGCCGCCGGAAATACCACCTCGCCGAAACCCTAGTCGAAGAGGTACTTGCTGGTGCTTGTGAAATGAGTGTGCCGCTTTACAATTCTGTGATTAGGTTTTGCTGTGGTCGGAAGTTTCTGTTTAATCGAGCTTTTGATGTGTACAAGAAAATGTGGAAATCTGATGACTGCAAACCTAACCTTGAAACTTATGCTATGCTGTTCAATACACTGCTTAGGAGATTCAATAAGTTGAATGTATGTTATGTGTATTTACATTCGGTTCGATCGTTAACGAAGCAAATGAAATCCTCTGGTGTGATTCCTGATACGTTTGTGTTGAACATGATCATCAAAGCTTTTTCTAAGTGTCTTGAAGTCGACGAAGCGATTCGAGTTTTTCGGGAAATGGGGTTGTATGGTTGTGAACCAAATGCATATACATATGGTTACATTGCAAAAGGGTTGTGTGAGAAAGGAAGAGTTGGACAAGGATTGGAATTTTACAAGGAAATGAGAGTTAAAGGTCTGTTCCCTAGCAGCAGTACTTATATGATTCTCATTTGTAGTCTAGCTATGGAATGCCGATTCGACGAAGCCATTGAGGTTTGCTTTGACATGTTGAGTACTTCCCGGGCACCGGATATGCTTACTTACAGAACCCTCTTGGAAGGATTGTGTCGGGAAGGACGGGATAGTGACGCGTTTGATTTGCTTGATGAGTTGAAGAAGAGGGATAAACTGATGAATGAGAAGACATTCAATATTCTGTTAAATGGGCTGCACATTGTTGGTAGAGAGTAG

mRNA sequence

ATGATCGGAAAATTCCTCCGCCCGGTCCTCTCAGCTTCCCGTAAACGCAATCCCCTTTCATCACTGTTTCAATCTCTTCCCAATCCCATTCTTCCTTACAATCTCCACCGCCGTTCTCTTTGCTCGCCATCACCATCCACTGTTCTTCCTCCTCAAACCCCCGAAAATTTTGACCTCCCAATCCAAAAAGTTCGCTCCCAAACTCCTCTCGAGAAGCAATTCGAAACATGGATCCAAAAGCTCAAGCCCGGATTCTCCCCTTCCGATGTCAACGAGGCTTTGCAAGCCCAATCGGACCCCGATCTCGCCCTCGATCTCTTCCGGTGGACGGCTCAACAGCGCGGCTATAAACACAACGATTTAACCTATCTAACAATCATTAAGATCCTAATTTGCCGCCGGAAATACCACCTCGCCGAAACCCTAGTCGAAGAGGTACTTGCTGGTGCTTGTGAAATGAGTGTGCCGCTTTACAATTCTGTGATTAGGTTTTGCTGTGGTCGGAAGTTTCTGTTTAATCGAGCTTTTGATGTGTACAAGAAAATGTGGAAATCTGATGACTGCAAACCTAACCTTGAAACTTATGCTATGCTGTTCAATACACTGCTTAGGAGATTCAATAAGTTGAATGTATGTTATGTGTATTTACATTCGGTTCGATCGTTAACGAAGCAAATGAAATCCTCTGGTGTGATTCCTGATACGTTTGTGTTGAACATGATCATCAAAGCTTTTTCTAAGTGTCTTGAAGTCGACGAAGCGATTCGAGTTTTTCGGGAAATGGGGTTGTATGGTTGTGAACCAAATGCATATACATATGGTTACATTGCAAAAGGGTTGTGTGAGAAAGGAAGAGTTGGACAAGGATTGGAATTTTACAAGGAAATGAGAGTTAAAGGTCTGTTCCCTAGCAGCAGTACTTATATGATTCTCATTTGTAGTCTAGCTATGGAATGCCGATTCGACGAAGCCATTGAGGTTTGCTTTGACATGTTGAGTACTTCCCGGGCACCGGATATGCTTACTTACAGAACCCTCTTGGAAGGATTGTGTCGGGAAGGACGGGATAGTGACGCGTTTGATTTGCTTGATGAGTTGAAGAAGAGGGATAAACTGATGAATGAGAAGACATTCAATATTCTGTTAAATGGGCTGCACATTGTTGGTAGAGAGTAG

Coding sequence (CDS)

ATGATCGGAAAATTCCTCCGCCCGGTCCTCTCAGCTTCCCGTAAACGCAATCCCCTTTCATCACTGTTTCAATCTCTTCCCAATCCCATTCTTCCTTACAATCTCCACCGCCGTTCTCTTTGCTCGCCATCACCATCCACTGTTCTTCCTCCTCAAACCCCCGAAAATTTTGACCTCCCAATCCAAAAAGTTCGCTCCCAAACTCCTCTCGAGAAGCAATTCGAAACATGGATCCAAAAGCTCAAGCCCGGATTCTCCCCTTCCGATGTCAACGAGGCTTTGCAAGCCCAATCGGACCCCGATCTCGCCCTCGATCTCTTCCGGTGGACGGCTCAACAGCGCGGCTATAAACACAACGATTTAACCTATCTAACAATCATTAAGATCCTAATTTGCCGCCGGAAATACCACCTCGCCGAAACCCTAGTCGAAGAGGTACTTGCTGGTGCTTGTGAAATGAGTGTGCCGCTTTACAATTCTGTGATTAGGTTTTGCTGTGGTCGGAAGTTTCTGTTTAATCGAGCTTTTGATGTGTACAAGAAAATGTGGAAATCTGATGACTGCAAACCTAACCTTGAAACTTATGCTATGCTGTTCAATACACTGCTTAGGAGATTCAATAAGTTGAATGTATGTTATGTGTATTTACATTCGGTTCGATCGTTAACGAAGCAAATGAAATCCTCTGGTGTGATTCCTGATACGTTTGTGTTGAACATGATCATCAAAGCTTTTTCTAAGTGTCTTGAAGTCGACGAAGCGATTCGAGTTTTTCGGGAAATGGGGTTGTATGGTTGTGAACCAAATGCATATACATATGGTTACATTGCAAAAGGGTTGTGTGAGAAAGGAAGAGTTGGACAAGGATTGGAATTTTACAAGGAAATGAGAGTTAAAGGTCTGTTCCCTAGCAGCAGTACTTATATGATTCTCATTTGTAGTCTAGCTATGGAATGCCGATTCGACGAAGCCATTGAGGTTTGCTTTGACATGTTGAGTACTTCCCGGGCACCGGATATGCTTACTTACAGAACCCTCTTGGAAGGATTGTGTCGGGAAGGACGGGATAGTGACGCGTTTGATTTGCTTGATGAGTTGAAGAAGAGGGATAAACTGATGAATGAGAAGACATTCAATATTCTGTTAAATGGGCTGCACATTGTTGGTAGAGAGTAG

Protein sequence

MIGKFLRPVLSASRKRNPLSSLFQSLPNPILPYNLHRRSLCSPSPSTVLPPQTPENFDLPIQKVRSQTPLEKQFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILICRRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDVYKKMWKSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKGLFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAFDLLDELKKRDKLMNEKTFNILLNGLHIVGRE

Homology

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BLAST of CmoCh02G017060 vs. ExPASy Swiss-Prot
Match: Q9LSF5 (Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g25210 PE=2 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 1.1e-135
Identity = 237/367 (64.58%), Postives = 295/367 (80.38%), Query Frame = 0


Query: 24  QSLPNPILPYNLHRRSLCSPSPSTVLPPQTPENFDLPIQKVRSQTPLEKQFETWIQKLKP 83
           ++L  P L   ++  SL   S S+     +PE+   P  ++R++TPLE QFETWIQ LKP
Sbjct: 18  RNLSPPFLSTAVNHLSLSFSSVSS-----SPESHTSP-SRIRTRTPLETQFETWIQNLKP 77

Query: 84  GFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILICRRKYHLAETLV 143
           GF+ SDV  AL+AQSDPDLALD+FRWTAQQRGYKHN   Y T+IK  I  ++ +  ETL+
Sbjct: 78  GFTNSDVVIALRAQSDPDLALDIFRWTAQQRGYKHNHEAYHTMIKQAITGKRNNFVETLI 137

Query: 144 EEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDVYKKMWKSDDCKPNLETYAMLFNTLL 203
           EEV+AGACEMSVPLYN +IRFCCGRKFLFNRAFDVY KM +SDD KP+LETY +L ++LL
Sbjct: 138 EEVIAGACEMSVPLYNCIIRFCCGRKFLFNRAFDVYNKMLRSDDSKPDLETYTLLLSSLL 197

Query: 204 RRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAFSKCLEVDEAIRVFREMGL 263
           +RFNKLNVCYVYLH+VRSLTKQMKS+GVIPDTFVLNMIIKA++KCLEVDEAIRVF+EM L
Sbjct: 198 KRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMAL 257

Query: 264 YGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKGLFPSSSTYMILICSLAMECRFDE 323
           YG EPNAYTY Y+ KG+CEKGRVGQGL FYKEM+VKG+ P+ S YM+LICSL+ME R DE
Sbjct: 258 YGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDE 317

Query: 324 AIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAFDLLDELKKRDKLMNEKTFNILLN 383
           A+EV +DML+ S +PDMLTY T+L  LCR GR S+A ++++E KKRD +M E+ +  L++
Sbjct: 318 AVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEWKKRDPVMGERNYRTLMD 377

Query: 384 GLHIVGR 391
            ++ + +
Sbjct: 378 EVYFLNK 378

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BLAST of CmoCh02G017060 vs. ExPASy Swiss-Prot
Match: Q9ZUY1 (Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g27800 PE=3 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 4.3e-52
Identity = 109/317 (34.38%), Postives = 187/317 (58.99%), Query Frame = 0


Query: 73  QFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILIC 132
           +F   I KL P F+P ++ +A+  + DP L   LF W +QQ  + H + +Y   I+ L  
Sbjct: 125 KFHETISKLPPRFTPEELADAITLEEDPFLCFHLFNWASQQPRFTHENCSYHIAIRKLGA 184

Query: 133 RRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDVYKKM--WKSDDCKP 192
            + Y   + +V +VL+     +  LYNS+I F   +     RA ++++ M   K+ +C+P
Sbjct: 185 AKMYQEMDDIVNQVLSVRHIGNENLYNSII-FYFTKAGKLIRAVNIFRHMVTSKNLECRP 244

Query: 193 NLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAFSKCLE 252
            + TY +LF  LL R N   + +VY+ +VRSL +QM  SG+ PD F LN ++K +   L 
Sbjct: 245 TIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLH 304

Query: 253 VDEAIRVFREMG-LYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKGLFPSSSTYM 312
           V++A+R+F +M  +Y CEPN++TY Y+  GLC +GR     E   EM+ KG  P+  +Y 
Sbjct: 305 VNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYN 364

Query: 313 ILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAFDLLDELKKR 372
            L+ + A+    D+A++  ++M+   R  D ++YRTL++  CR+G+  +A  LL+ L+++
Sbjct: 365 SLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLLEMLREK 424

Query: 373 DKLMNEKTFNILLNGLH 387
            +L++  +++ L+N LH
Sbjct: 425 -QLVDRDSYDKLVNVLH 439

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BLAST of CmoCh02G017060 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.4e-31
Identity = 93/312 (29.81%), Postives = 156/312 (50.00%), Query Frame = 0


Query: 80  KLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQ--RGYKHNDLTYLTIIKILICRRKYH 139
           K     +PS V + ++A+ D + ++ +F     +   GY H+  ++  ++  L+   K+ 
Sbjct: 9   KWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFK 68

Query: 140 LAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFD---VYKKMWKSDDCKPNLET 199
            AE L+  +    C +S  +  S+ R   GR    +R FD   V+ KM K  DC P+ + 
Sbjct: 69  AAEDLIVRMKIENCVVSEDILLSICR-GYGR---VHRPFDSLRVFHKM-KDFDCDPSQKA 128

Query: 200 YAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAFSK-CLEVDE 259
           Y  +   L+   N+LN+ + +        K M+  G+ P    LN++IKA  +    VD 
Sbjct: 129 YVTVLAILVEE-NQLNLAFKFY-------KNMREIGLPPTVASLNVLIKALCRNDGTVDA 188

Query: 260 AIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKGLFPSSSTYMILIC 319
            +++F EM   GC+P++YTYG +  GLC  GR+ +  + + EM  K   P+  TY  LI 
Sbjct: 189 GLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLIN 248

Query: 320 SLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAFDLLDELKKRDKLM 379
            L      DEA+    +M S    P++ TY +L++GLC++GR   A +L + +  R    
Sbjct: 249 GLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRP 307

Query: 380 NEKTFNILLNGL 386
           N  T+  L+ GL
Sbjct: 309 NMVTYTTLITGL 307

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BLAST of CmoCh02G017060 vs. ExPASy Swiss-Prot
Match: P0C894 (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-29
Identity = 88/340 (25.88%), Postives = 153/340 (45.00%), Query Frame = 0


Query: 94  LQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILICRRKYHLAETLVEEVLAGACEM 153
           ++ + DP LA   F+W+  + G+KH+  +Y  +  IL C R Y+ A ++++E++    + 
Sbjct: 116 VELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADC 175

Query: 154 SV-PLYNSVIRFCCGRKFLFNRAFDV---------------------------------- 213
            V  +  S    C     +F+  F V                                  
Sbjct: 176 DVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLH 235

Query: 214 -YKKMWKSDDCK------------PNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQ 273
            + K+ K+DD K            P + TY ++ + + +  +        + + R L ++
Sbjct: 236 RFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD--------VEAARGLFEE 295

Query: 274 MKSSGVIPDTFVLNMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGR 333
           MK  G++PDT   N +I  F K   +D+ +  F EM    CEP+  TY  +    C+ G+
Sbjct: 296 MKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 355

Query: 334 VGQGLEFYKEMRVKGLFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRT 386
           +  GLEFY+EM+  GL P+  +Y  L+ +   E    +AI+   DM      P+  TY +
Sbjct: 356 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 415

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BLAST of CmoCh02G017060 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.7e-28
Identity = 95/416 (22.84%), Postives = 171/416 (41.11%), Query Frame = 0


Query: 31  LPYNLHRRSLCSPSP-STVLPPQTPENFDLPIQKVRSQTPLEKQFETWIQKLKPGFSPSD 90
           +P  + RR  CS SP    LP +  ++  +P + +   +         ++ +    SPS 
Sbjct: 33  VPSPVTRRQFCSVSPLLRNLPEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSH 92

Query: 91  VNEALQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILICRRKYHLAETLVEEVLAG 150
           V+       DP  AL+   W +Q   YKH+  +Y +++ +LI    Y      +  ++  
Sbjct: 93  VSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLI-NNGYVGVVFKIRLLMIK 152

Query: 151 ACE--------------------------MSVPLYNSVIRFCCGRKFLFNRAFDVYKKMW 210
           +C+                          + +  YN+++     R  L +    VY +M 
Sbjct: 153 SCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLN-SLARFGLVDEMKQVYMEML 212

Query: 211 KSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIK 270
           +   C PN+ TY  + N   +  N        +        ++  +G+ PD F    +I 
Sbjct: 213 EDKVC-PNIYTYNKMVNGYCKLGN--------VEEANQYVSKIVEAGLDPDFFTYTSLIM 272

Query: 271 AFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFY---------- 330
            + +  ++D A +VF EM L GC  N   Y ++  GLC   R+ + ++ +          
Sbjct: 273 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP 332

Query: 331 -------------------------KEMRVKGLFPSSSTYMILICSLAMECRFDEAIEVC 385
                                    KEM   G+ P+  TY +LI SL  +C+F++A E+ 
Sbjct: 333 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 392

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BLAST of CmoCh02G017060 vs. ExPASy TrEMBL
Match: A0A6J1ETB4 (pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111437373 PE=4 SV=1)

HSP 1 Score: 797.0 bits (2057), Expect = 3.6e-227
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 1   MIGKFLRPVLSASRKRNPLSSLFQSLPNPILPYNLHRRSLCSPSPSTVLPPQTPENFDLP 60
           MIGKFLRPVLSASRKRNPLSSLFQSLPNPILPYNLHRRSLCSPSPSTVLPPQTPENFDLP
Sbjct: 1   MIGKFLRPVLSASRKRNPLSSLFQSLPNPILPYNLHRRSLCSPSPSTVLPPQTPENFDLP 60

Query: 61  IQKVRSQTPLEKQFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHND 120
           IQKVRSQTPLEKQFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHND
Sbjct: 61  IQKVRSQTPLEKQFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHND 120

Query: 121 LTYLTIIKILICRRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDVYK 180
           LTYLTIIKILICRRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDVYK
Sbjct: 121 LTYLTIIKILICRRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDVYK 180

Query: 181 KMWKSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNM 240
           KMWKSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNM
Sbjct: 181 KMWKSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNM 240

Query: 241 IIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKG 300
           IIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKG
Sbjct: 241 IIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKG 300

Query: 301 LFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAF 360
           LFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAF
Sbjct: 301 LFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAF 360

Query: 361 DLLDELKKRDKLMNEKTFNILLNGLHIVGRE 392
           DLLDELKKRDKLMNEKTFNILLNGLHIVGRE
Sbjct: 361 DLLDELKKRDKLMNEKTFNILLNGLHIVGRE 391

[Close]

BLAST of CmoCh02G017060 vs. ExPASy TrEMBL
Match: A0A6J1K5G5 (pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111490928 PE=4 SV=1)

HSP 1 Score: 769.6 bits (1986), Expect = 6.2e-219
Identity = 381/393 (96.95%), Postives = 385/393 (97.96%), Query Frame = 0


Query: 1   MIGKFLRPVLSASRKRNPLSSLFQSLPNPILPYNLHRRSLC--SPSPSTVLPPQTPENFD 60
           MIGKFLRPVLSASRKRNPLSS FQSLPNPILPYNLHRRSLC  SPSPSTVLP Q PENF 
Sbjct: 1   MIGKFLRPVLSASRKRNPLSSPFQSLPNPILPYNLHRRSLCSPSPSPSTVLPSQPPENFS 60

Query: 61  LPIQKVRSQTPLEKQFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKH 120
           LPIQKVRSQTPLEKQFETW+QKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKH
Sbjct: 61  LPIQKVRSQTPLEKQFETWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKH 120

Query: 121 NDLTYLTIIKILICRRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDV 180
           NDLTYLTIIKILICRR+YHLAETLVEEVLAGACEMSVPLYNSVIRFCCGR+FLFNRAFDV
Sbjct: 121 NDLTYLTIIKILICRRRYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRRFLFNRAFDV 180

Query: 181 YKKMWKSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVL 240
           YKKMWKSDDCKPNLETYAMLFN+LLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVL
Sbjct: 181 YKKMWKSDDCKPNLETYAMLFNSLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVL 240

Query: 241 NMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRV 300
           NMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRV
Sbjct: 241 NMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRV 300

Query: 301 KGLFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSD 360
           KGL PSSSTYMILICSLAME RFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSD
Sbjct: 301 KGLSPSSSTYMILICSLAMEGRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSD 360

Query: 361 AFDLLDELKKRDKLMNEKTFNILLNGLHIVGRE 392
           AFDLLDELKKRDKLMNEKTFNILLNGLHIVGRE
Sbjct: 361 AFDLLDELKKRDKLMNEKTFNILLNGLHIVGRE 393

[Close]

BLAST of CmoCh02G017060 vs. ExPASy TrEMBL
Match: A0A0A0L8U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G635360 PE=4 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 8.7e-189
Identity = 331/393 (84.22%), Postives = 357/393 (90.84%), Query Frame = 0


Query: 1   MIGKFLRPVLSASRKRNPLSSLFQSLPNPILPYNLHRRSLCSPSP--STVLPPQTPENFD 60
           M+ KFLRP+LS+ R+ +  SS FQSL NPILP +LH R LCS SP  S +LPPQ  +N +
Sbjct: 1   MLSKFLRPILSSCRRPHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLN 60

Query: 61  LPIQKVRSQTPLEKQFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKH 120
           LPI KVR+QTPLEKQFE+W+QKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKH
Sbjct: 61  LPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKH 120

Query: 121 NDLTYLTIIKILICRRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDV 180
           N LTYLTIIKILI RR+ HLAETLVEEV+AGACEMSVPLYNSVIRFCC RK  FNRAFDV
Sbjct: 121 NHLTYLTIIKILIYRRRCHLAETLVEEVIAGACEMSVPLYNSVIRFCCARKCRFNRAFDV 180

Query: 181 YKKMWKSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVL 240
           YKKMWKSDDCKP LETYAMLFN+LLRRFNKL+V YVYLHSVRSLTKQMKSSGVIPDTFVL
Sbjct: 181 YKKMWKSDDCKPTLETYAMLFNSLLRRFNKLSVSYVYLHSVRSLTKQMKSSGVIPDTFVL 240

Query: 241 NMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRV 300
           NMIIKA+SKCLEVDEAIRVFREMGLY C+PN+YTYGYIAKGLCEKGRV QGLEFYKEMRV
Sbjct: 241 NMIIKAYSKCLEVDEAIRVFREMGLYACQPNSYTYGYIAKGLCEKGRVEQGLEFYKEMRV 300

Query: 301 KGLFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSD 360
           +GL PSSSTYMILICSLAME RF+EAIE+CFDML  S APD+LTYRTLLEGLCREGRDS+
Sbjct: 301 RGLIPSSSTYMILICSLAMERRFEEAIEICFDMLCNSMAPDLLTYRTLLEGLCREGRDSE 360

Query: 361 AFDLLDELKKRDKLMNEKTFNILLNGLHIVGRE 392
           AFDLLDEL+KRDKLMNEKTF  LLNGLH VGR+
Sbjct: 361 AFDLLDELRKRDKLMNEKTFKTLLNGLHTVGRD 393

[Close]

BLAST of CmoCh02G017060 vs. ExPASy TrEMBL
Match: A0A5D3DR42 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00350 PE=4 SV=1)

HSP 1 Score: 669.1 bits (1725), Expect = 1.1e-188
Identity = 331/393 (84.22%), Postives = 358/393 (91.09%), Query Frame = 0


Query: 1   MIGKFLRPVLSASRKRNPLSSLFQSLPNPILPYNLHRRSLCSPSP--STVLPPQTPENFD 60
           M+GKFLRP++S+SR  +  SS FQSL NPILP +LH R LCS SP  S  LPPQ  +N +
Sbjct: 1   MLGKFLRPIVSSSRSPHLFSSPFQSLLNPILPSHLHPRFLCSLSPPSSAFLPPQDSDNLN 60

Query: 61  LPIQKVRSQTPLEKQFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKH 120
           LPI KVR+QTPLEKQFE+W+QKLKPGFSPSDV EALQAQSDPDLALDLFRWTA QRGYKH
Sbjct: 61  LPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVIEALQAQSDPDLALDLFRWTALQRGYKH 120

Query: 121 NDLTYLTIIKILICRRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDV 180
           NDLTYLTIIKILI  R+YHLA+TLVEEV+AGACEMSVPLYNSVIRFCCGRK  FNRAFDV
Sbjct: 121 NDLTYLTIIKILISCRRYHLAQTLVEEVIAGACEMSVPLYNSVIRFCCGRKTRFNRAFDV 180

Query: 181 YKKMWKSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVL 240
           YKKMWKSDDCKP LETYAMLFN+LLRRFNKLNV YVYLHSVRSLTKQMKSSGVIPDTFVL
Sbjct: 181 YKKMWKSDDCKPTLETYAMLFNSLLRRFNKLNVSYVYLHSVRSLTKQMKSSGVIPDTFVL 240

Query: 241 NMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRV 300
           NMIIKA+SKCLEVDEAIRVFREMGLY C+PN+YTYGYIAKGLCEKGRV +GLEFYKEMRV
Sbjct: 241 NMIIKAYSKCLEVDEAIRVFREMGLYACQPNSYTYGYIAKGLCEKGRVEEGLEFYKEMRV 300

Query: 301 KGLFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSD 360
           +GL PSSSTYMILICSLAME RF+EAIE+CFDML  S APD+LTYRTLLEGLCREGRDS+
Sbjct: 301 RGLIPSSSTYMILICSLAMERRFEEAIEICFDMLCNSMAPDLLTYRTLLEGLCREGRDSE 360

Query: 361 AFDLLDELKKRDKLMNEKTFNILLNGLHIVGRE 392
           AFDLLDEL+KRDKLM+EKTF ILLNGLH VGR+
Sbjct: 361 AFDLLDELRKRDKLMSEKTFKILLNGLHTVGRD 393

[Close]

BLAST of CmoCh02G017060 vs. ExPASy TrEMBL
Match: A0A1S4E2S7 (pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499230 PE=4 SV=1)

HSP 1 Score: 669.1 bits (1725), Expect = 1.1e-188
Identity = 331/393 (84.22%), Postives = 358/393 (91.09%), Query Frame = 0


Query: 1   MIGKFLRPVLSASRKRNPLSSLFQSLPNPILPYNLHRRSLCSPSP--STVLPPQTPENFD 60
           M+GKFLRP++S+SR  +  SS FQSL NPILP +LH R LCS SP  S  LPPQ  +N +
Sbjct: 1   MLGKFLRPIVSSSRSPHLFSSPFQSLLNPILPSHLHPRFLCSLSPPSSAFLPPQDSDNLN 60

Query: 61  LPIQKVRSQTPLEKQFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKH 120
           LPI KVR+QTPLEKQFE+W+QKLKPGFSPSDV EALQAQSDPDLALDLFRWTA QRGYKH
Sbjct: 61  LPIPKVRTQTPLEKQFESWVQKLKPGFSPSDVIEALQAQSDPDLALDLFRWTALQRGYKH 120

Query: 121 NDLTYLTIIKILICRRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDV 180
           NDLTYLTIIKILI  R+YHLA+TLVEEV+AGACEMSVPLYNSVIRFCCGRK  FNRAFDV
Sbjct: 121 NDLTYLTIIKILISCRRYHLAQTLVEEVIAGACEMSVPLYNSVIRFCCGRKTRFNRAFDV 180

Query: 181 YKKMWKSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVL 240
           YKKMWKSDDCKP LETYAMLFN+LLRRFNKLNV YVYLHSVRSLTKQMKSSGVIPDTFVL
Sbjct: 181 YKKMWKSDDCKPTLETYAMLFNSLLRRFNKLNVSYVYLHSVRSLTKQMKSSGVIPDTFVL 240

Query: 241 NMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRV 300
           NMIIKA+SKCLEVDEAIRVFREMGLY C+PN+YTYGYIAKGLCEKGRV +GLEFYKEMRV
Sbjct: 241 NMIIKAYSKCLEVDEAIRVFREMGLYACQPNSYTYGYIAKGLCEKGRVEEGLEFYKEMRV 300

Query: 301 KGLFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSD 360
           +GL PSSSTYMILICSLAME RF+EAIE+CFDML  S APD+LTYRTLLEGLCREGRDS+
Sbjct: 301 RGLIPSSSTYMILICSLAMERRFEEAIEICFDMLCNSMAPDLLTYRTLLEGLCREGRDSE 360

Query: 361 AFDLLDELKKRDKLMNEKTFNILLNGLHIVGRE 392
           AFDLLDEL+KRDKLM+EKTF ILLNGLH VGR+
Sbjct: 361 AFDLLDELRKRDKLMSEKTFKILLNGLHTVGRD 393

[Close]

BLAST of CmoCh02G017060 vs. TAIR 10
Match: AT3G25210.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 484.6 bits (1246), Expect = 7.7e-137
Identity = 237/367 (64.58%), Postives = 295/367 (80.38%), Query Frame = 0


Query: 24  QSLPNPILPYNLHRRSLCSPSPSTVLPPQTPENFDLPIQKVRSQTPLEKQFETWIQKLKP 83
           ++L  P L   ++  SL   S S+     +PE+   P  ++R++TPLE QFETWIQ LKP
Sbjct: 18  RNLSPPFLSTAVNHLSLSFSSVSS-----SPESHTSP-SRIRTRTPLETQFETWIQNLKP 77

Query: 84  GFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILICRRKYHLAETLV 143
           GF+ SDV  AL+AQSDPDLALD+FRWTAQQRGYKHN   Y T+IK  I  ++ +  ETL+
Sbjct: 78  GFTNSDVVIALRAQSDPDLALDIFRWTAQQRGYKHNHEAYHTMIKQAITGKRNNFVETLI 137

Query: 144 EEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDVYKKMWKSDDCKPNLETYAMLFNTLL 203
           EEV+AGACEMSVPLYN +IRFCCGRKFLFNRAFDVY KM +SDD KP+LETY +L ++LL
Sbjct: 138 EEVIAGACEMSVPLYNCIIRFCCGRKFLFNRAFDVYNKMLRSDDSKPDLETYTLLLSSLL 197

Query: 204 RRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAFSKCLEVDEAIRVFREMGL 263
           +RFNKLNVCYVYLH+VRSLTKQMKS+GVIPDTFVLNMIIKA++KCLEVDEAIRVF+EM L
Sbjct: 198 KRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMAL 257

Query: 264 YGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKGLFPSSSTYMILICSLAMECRFDE 323
           YG EPNAYTY Y+ KG+CEKGRVGQGL FYKEM+VKG+ P+ S YM+LICSL+ME R DE
Sbjct: 258 YGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDE 317

Query: 324 AIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAFDLLDELKKRDKLMNEKTFNILLN 383
           A+EV +DML+ S +PDMLTY T+L  LCR GR S+A ++++E KKRD +M E+ +  L++
Sbjct: 318 AVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEWKKRDPVMGERNYRTLMD 377

Query: 384 GLHIVGR 391
            ++ + +
Sbjct: 378 EVYFLNK 378

[Close]

BLAST of CmoCh02G017060 vs. TAIR 10
Match: AT2G27800.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 206.8 bits (525), Expect = 3.1e-53
Identity = 109/317 (34.38%), Postives = 187/317 (58.99%), Query Frame = 0


Query: 73  QFETWIQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILIC 132
           +F   I KL P F+P ++ +A+  + DP L   LF W +QQ  + H + +Y   I+ L  
Sbjct: 125 KFHETISKLPPRFTPEELADAITLEEDPFLCFHLFNWASQQPRFTHENCSYHIAIRKLGA 184

Query: 133 RRKYHLAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFDVYKKM--WKSDDCKP 192
            + Y   + +V +VL+     +  LYNS+I F   +     RA ++++ M   K+ +C+P
Sbjct: 185 AKMYQEMDDIVNQVLSVRHIGNENLYNSII-FYFTKAGKLIRAVNIFRHMVTSKNLECRP 244

Query: 193 NLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAFSKCLE 252
            + TY +LF  LL R N   + +VY+ +VRSL +QM  SG+ PD F LN ++K +   L 
Sbjct: 245 TIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLH 304

Query: 253 VDEAIRVFREMG-LYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKGLFPSSSTYM 312
           V++A+R+F +M  +Y CEPN++TY Y+  GLC +GR     E   EM+ KG  P+  +Y 
Sbjct: 305 VNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYN 364

Query: 313 ILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAFDLLDELKKR 372
            L+ + A+    D+A++  ++M+   R  D ++YRTL++  CR+G+  +A  LL+ L+++
Sbjct: 365 SLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLLEMLREK 424

Query: 373 DKLMNEKTFNILLNGLH 387
            +L++  +++ L+N LH
Sbjct: 425 -QLVDRDSYDKLVNVLH 439

[Close]

BLAST of CmoCh02G017060 vs. TAIR 10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-32
Identity = 93/312 (29.81%), Postives = 156/312 (50.00%), Query Frame = 0


Query: 80  KLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQ--RGYKHNDLTYLTIIKILICRRKYH 139
           K     +PS V + ++A+ D + ++ +F     +   GY H+  ++  ++  L+   K+ 
Sbjct: 9   KWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFK 68

Query: 140 LAETLVEEVLAGACEMSVPLYNSVIRFCCGRKFLFNRAFD---VYKKMWKSDDCKPNLET 199
            AE L+  +    C +S  +  S+ R   GR    +R FD   V+ KM K  DC P+ + 
Sbjct: 69  AAEDLIVRMKIENCVVSEDILLSICR-GYGR---VHRPFDSLRVFHKM-KDFDCDPSQKA 128

Query: 200 YAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAFSK-CLEVDE 259
           Y  +   L+   N+LN+ + +        K M+  G+ P    LN++IKA  +    VD 
Sbjct: 129 YVTVLAILVEE-NQLNLAFKFY-------KNMREIGLPPTVASLNVLIKALCRNDGTVDA 188

Query: 260 AIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFYKEMRVKGLFPSSSTYMILIC 319
            +++F EM   GC+P++YTYG +  GLC  GR+ +  + + EM  K   P+  TY  LI 
Sbjct: 189 GLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLIN 248

Query: 320 SLAMECRFDEAIEVCFDMLSTSRAPDMLTYRTLLEGLCREGRDSDAFDLLDELKKRDKLM 379
            L      DEA+    +M S    P++ TY +L++GLC++GR   A +L + +  R    
Sbjct: 249 GLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRP 307

Query: 380 NEKTFNILLNGL 386
           N  T+  L+ GL
Sbjct: 309 NMVTYTTLITGL 307

[Close]

BLAST of CmoCh02G017060 vs. TAIR 10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 9.6e-31
Identity = 88/340 (25.88%), Postives = 153/340 (45.00%), Query Frame = 0


Query: 94  LQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILICRRKYHLAETLVEEVLAGACEM 153
           ++ + DP LA   F+W+  + G+KH+  +Y  +  IL C R Y+ A ++++E++    + 
Sbjct: 116 VELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADC 175

Query: 154 SV-PLYNSVIRFCCGRKFLFNRAFDV---------------------------------- 213
            V  +  S    C     +F+  F V                                  
Sbjct: 176 DVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLH 235

Query: 214 -YKKMWKSDDCK------------PNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQ 273
            + K+ K+DD K            P + TY ++ + + +  +        + + R L ++
Sbjct: 236 RFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD--------VEAARGLFEE 295

Query: 274 MKSSGVIPDTFVLNMIIKAFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGR 333
           MK  G++PDT   N +I  F K   +D+ +  F EM    CEP+  TY  +    C+ G+
Sbjct: 296 MKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 355

Query: 334 VGQGLEFYKEMRVKGLFPSSSTYMILICSLAMECRFDEAIEVCFDMLSTSRAPDMLTYRT 386
           +  GLEFY+EM+  GL P+  +Y  L+ +   E    +AI+   DM      P+  TY +
Sbjct: 356 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 415

[Close]

BLAST of CmoCh02G017060 vs. TAIR 10
Match: AT5G65560.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 6.9e-29
Identity = 95/416 (22.84%), Postives = 171/416 (41.11%), Query Frame = 0


Query: 31  LPYNLHRRSLCSPSP-STVLPPQTPENFDLPIQKVRSQTPLEKQFETWIQKLKPGFSPSD 90
           +P  + RR  CS SP    LP +  ++  +P + +   +         ++ +    SPS 
Sbjct: 33  VPSPVTRRQFCSVSPLLRNLPEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSH 92

Query: 91  VNEALQAQSDPDLALDLFRWTAQQRGYKHNDLTYLTIIKILICRRKYHLAETLVEEVLAG 150
           V+       DP  AL+   W +Q   YKH+  +Y +++ +LI    Y      +  ++  
Sbjct: 93  VSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLI-NNGYVGVVFKIRLLMIK 152

Query: 151 ACE--------------------------MSVPLYNSVIRFCCGRKFLFNRAFDVYKKMW 210
           +C+                          + +  YN+++     R  L +    VY +M 
Sbjct: 153 SCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLN-SLARFGLVDEMKQVYMEML 212

Query: 211 KSDDCKPNLETYAMLFNTLLRRFNKLNVCYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIK 270
           +   C PN+ TY  + N   +  N        +        ++  +G+ PD F    +I 
Sbjct: 213 EDKVC-PNIYTYNKMVNGYCKLGN--------VEEANQYVSKIVEAGLDPDFFTYTSLIM 272

Query: 271 AFSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIAKGLCEKGRVGQGLEFY---------- 330
            + +  ++D A +VF EM L GC  N   Y ++  GLC   R+ + ++ +          
Sbjct: 273 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP 332

Query: 331 -------------------------KEMRVKGLFPSSSTYMILICSLAMECRFDEAIEVC 385
                                    KEM   G+ P+  TY +LI SL  +C+F++A E+ 
Sbjct: 333 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 392

The following BLAST results are available for this feature:

BLAST of CmoCh02G017060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSF5	1.1e-135	64.58	Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidop...	[more]
Q9ZUY1	4.3e-52	34.38	Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidop...	[more]
Q9FNL2	9.4e-31	29.81	Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX...	[more]
P0C894	1.4e-29	25.88	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]
Q9LSL9	9.7e-28	22.84	Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmoCh02G017060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETB4	3.6e-227	100.00	pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Cucurbit...	[more]
A0A6J1K5G5	6.2e-219	96.95	pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Cucurbit...	[more]
A0A0A0L8U7	8.7e-189	84.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G635360 PE=4 SV=1	[more]
A0A5D3DR42	1.1e-188	84.22	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4E2S7	1.1e-188	84.22	pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Cucumis ...	[more]

BLAST of CmoCh02G017060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25210.1	7.7e-137	64.58	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G27800.1	3.1e-53	34.38	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G46100.1	6.7e-32	29.81	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G02150.1	9.6e-31	25.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G65560.1	6.9e-29	22.84	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 271..304 e-value: 1.3E-5 score: 23.0 coord: 237..270 e-value: 1.8E-6 score: 25.8 coord: 342..370 e-value: 2.8E-5 score: 22.0 coord: 158..191 e-value: 8.6E-5 score: 20.5 coord: 307..339 e-value: 1.5E-4 score: 19.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 233..281 e-value: 7.8E-13 score: 48.4 coord: 338..385 e-value: 3.4E-11 score: 43.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 112..168 e-value: 0.012 score: 15.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 306..332 e-value: 0.11 score: 12.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 234..268 score: 11.169622
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 339..373 score: 10.172144
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 269..303 score: 11.246351
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 295..391 e-value: 1.4E-18 score: 69.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 210..294 e-value: 8.2E-21 score: 76.4 coord: 59..209 e-value: 1.3E-21 score: 79.0
None	No IPR available	PANTHER	PTHR47938:SF2	OS06G0184866 PROTEIN	coord: 37..390
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 37..390

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G017060.1	CmoCh02G017060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding