CmoCh02G014730 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G014730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ubiquitin-conjugating enzyme E2 4-like
Location	Cmo_Chr02: 8643763 .. 8644568 (+)
RNA-Seq Expression	CmoCh02G014730
Synteny	CmoCh02G014730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTCCCAGCAAGCGACGCGAAATGGATTTGATGAAACTGTAAGTTCTTCCATGCCTTCCGATTGAATTCTTCTCTGCTTCTTCTTCCTCCTTTTTCCCCTTTGACTCTGCTGATTTTGACATCAGGATGATGAGTGATTACAAGGTGGAAACCATCAATGATAGCATGCAAGAGTTCTATGTCGACTTCCATGGTCCTAAAGACAGTAAATCATCTATACCCATCTTTGATTTCTCTATTTTCTTTGCTTTTTTACTAATTCCTCATCTTCTACTGCGCCCTTCTGGATTTCCCCTTTTTCAGGTTCCTAACAACTCTCTTTGAATCGACCTGTTTAGTTCTTAATTGCCTGCGTTTGTTGAATTTCCCTTCTCAAATGAATCCCAGTTCATATAGACTGTTCTGTGCAATATGATTTTGGGTTATATGGATTATCTGATCTTATCCCTTTTTCTTTGTTTGCTTGTTTGGTTTGAAATCGGAAGGTCTTTACCAAGGAGGTGTGTGGAGGATTAGGGTGGAGTTGCCAGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTCATCAACAAAATTTATCATCCAAATGTTGATGAAATGTGAGTTGACATCACTCACACTCTGAAACTTATTACATTGGTTCTTGATAGGGGTAGGGTCTTATCTTGTTCTGGGGATGATTGTTGACTGATACGGATGTTTTACGAATCGCAGGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGGTGGGAAAACATCCCTACTCTTATCTTTGTAG

mRNA sequence

ATGTCTTCTCCCAGCAAGCGACGCGAAATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAACCATCAATGATAGCATGCAAGAGTTCTATGTCGACTTCCATGGTCCTAAAGACAGTAAATCATCTATACCCATCTTTGATTTCTCTATTTTCTTTGCTTTTTTACTAATTCCTCATCTTCTACTGCGCCCTTCTGGATTTCCCCTTTTTCAGACTGTTCTGTGCAATATGATTTTGGGTTATATGGATTATCTGATCTTATCCCTTTTTCTTTGTTTGCTTGTTTGGTTTGAAATCGGAAGGTCTTTACCAAGGAGGGTGGAGTTGCCAGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTCATCAACAAAATTTATCATCCAAATGTTGATGAAATGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGGTGGGAAAACATCCCTACTCTTATCTTTGTAG

Coding sequence (CDS)

ATGTCTTCTCCCAGCAAGCGACGCGAAATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAACCATCAATGATAGCATGCAAGAGTTCTATGTCGACTTCCATGGTCCTAAAGACAGTAAATCATCTATACCCATCTTTGATTTCTCTATTTTCTTTGCTTTTTTACTAATTCCTCATCTTCTACTGCGCCCTTCTGGATTTCCCCTTTTTCAGACTGTTCTGTGCAATATGATTTTGGGTTATATGGATTATCTGATCTTATCCCTTTTTCTTTGTTTGCTTGTTTGGTTTGAAATCGGAAGGTCTTTACCAAGGAGGGTGGAGTTGCCAGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTCATCAACAAAATTTATCATCCAAATGTTGATGAAATGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGGTGGGAAAACATCCCTACTCTTATCTTTGTAG

Protein sequence

MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLIPHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFGGKTSLLLSL

Homology

[Close]

BLAST of CmoCh02G014730 vs. ExPASy Swiss-Prot
Match: P42748 (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 7.7e-35
Identity = 84/154 (54.55%), Postives = 90/154 (58.44%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMD+MKLMMSDYKVETIND MQEFYV+F+GPKDS                  
Sbjct: 1   MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWKIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PS+GFI KIYHPNVDE+SGSVCLDVINQTWSPMF
Sbjct: 121 PSVGFITKIYHPNVDELSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy Swiss-Prot
Match: P42749 (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33
Identity = 84/154 (54.55%), Postives = 89/154 (57.79%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVE IND MQEF+V+F GPKDS     I++          
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDS-----IYEGG-------- 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                                                VW         RVELPDAYPYKS
Sbjct: 61  -------------------------------------VW-------KIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PS+GFI KIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy Swiss-Prot
Match: P16577 (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum OX=4565 GN=UBC4 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-32
Identity = 81/154 (52.60%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKV+ IND M EF+V FHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      ++Q                            G     RVEL +AYPYKS
Sbjct: 61  -----------IYQ----------------------------GGVWKVRVELTEAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGF NKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy Swiss-Prot
Match: P42750 (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-31
Identity = 76/154 (49.35%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           M+SPSKRREMD+MKLMMSDYKV+T+ND +Q FYV FHGP DS                  
Sbjct: 1   MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     +VELP+AYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWKIKVELPEAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PS+GF+NKIYHPNVDE SG+VCLDVINQTWSPMF
Sbjct: 121 PSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy Swiss-Prot
Match: Q9P7R4 (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubc8 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-26
Identity = 66/154 (42.86%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSP +R E D+MKL+MSDY+V  +ND+MQEFYV FHGP ++  S  I+           
Sbjct: 1   MSSPRRRIETDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKV--------- 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                                                            VELP  YP+KS
Sbjct: 61  ------------------------------------------------HVELPSEYPWKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGF+N+I+HPN+DE+SGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy TrEMBL
Match: A0A6J1K3W2 (ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491458 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35
Identity = 91/154 (59.09%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWRIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy TrEMBL
Match: A0A6J1H475 (ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita moschata OX=3662 GN=LOC111459841 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35
Identity = 91/154 (59.09%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWRIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy TrEMBL
Match: A0A5A7THI1 (Ubiquitin-conjugating enzyme E2 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002420 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.6e-35
Identity = 90/154 (58.44%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWRIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy TrEMBL
Match: A0A0A0KNV9 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152970 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.6e-35
Identity = 90/154 (58.44%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWRIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. ExPASy TrEMBL
Match: A0A1S3AUA7 (ubiquitin-conjugating enzyme E2 4-like OS=Cucumis melo OX=3656 GN=LOC103482765 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.6e-35
Identity = 90/154 (58.44%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWRIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. NCBI nr
Match: KAG5538353.1 (hypothetical protein RHGRI_019065 [Rhododendron griersonianum])

HSP 1 Score: 161.4 bits (407), Expect = 6.7e-36
Identity = 92/160 (57.50%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVE IND MQEFYV F+GP DSKSS P             
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFNGPSDSKSSYP------------- 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                                  Y++ +  S +         G     RVELPDAYPYKS
Sbjct: 61  -----------------------YLNQIPFSPY--------HGGVWKIRVELPDAYPYKS 116

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFGGKTSL 161
           PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFG ++ L
Sbjct: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFGKRSYL 116

[Close]

BLAST of CmoCh02G014730 vs. NCBI nr
Match: KAG7016977.1 (Ubiquitin-conjugating enzyme E2 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35
Identity = 92/157 (58.60%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
               L   G                            VW         +VELPDAYPYKS
Sbjct: 61  ----LYEGG----------------------------VW-------RIKVELPDAYPYKS 100

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFGGK 158
           PSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMFG K
Sbjct: 121 PSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFGRK 100

[Close]

BLAST of CmoCh02G014730 vs. NCBI nr
Match: XP_022958690.1 (ubiquitin-conjugating enzyme E2 4-like [Cucurbita moschata] >XP_023534777.1 ubiquitin-conjugating enzyme E2 4-like [Cucurbita pepo subsp. pepo] >KAG6606082.1 Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-35
Identity = 91/154 (59.09%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWRIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. NCBI nr
Match: XP_022996146.1 (ubiquitin-conjugating enzyme E2 4-like [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-35
Identity = 91/154 (59.09%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWRIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. NCBI nr
Match: KAG7036029.1 (Ubiquitin-conjugating enzyme E2 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-35
Identity = 91/154 (59.09%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS                  
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWRIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. TAIR 10
Match: AT5G41340.1 (ubiquitin conjugating enzyme 4 )

HSP 1 Score: 148.3 bits (373), Expect = 5.5e-36
Identity = 84/154 (54.55%), Postives = 90/154 (58.44%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMD+MKLMMSDYKVETIND MQEFYV+F+GPKDS                  
Sbjct: 1   MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     RVELPDAYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWKIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PS+GFI KIYHPNVDE+SGSVCLDVINQTWSPMF
Sbjct: 121 PSVGFITKIYHPNVDELSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. TAIR 10
Match: AT1G63800.1 (ubiquitin-conjugating enzyme 5 )

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-34
Identity = 84/154 (54.55%), Postives = 89/154 (57.79%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           MSSPSKRREMDLMKLMMSDYKVE IND MQEF+V+F GPKDS     I++          
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDS-----IYEGG-------- 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                                                VW         RVELPDAYPYKS
Sbjct: 61  -------------------------------------VW-------KIRVELPDAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PS+GFI KIYHPNVDEMSGSVCLDVINQTWSPMF
Sbjct: 121 PSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. TAIR 10
Match: AT2G46030.1 (ubiquitin-conjugating enzyme 6 )

HSP 1 Score: 137.9 bits (346), Expect = 7.4e-33
Identity = 76/154 (49.35%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSKSSIPIFDFSIFFAFLLI 60
           M+SPSKRREMD+MKLMMSDYKV+T+ND +Q FYV FHGP DS                  
Sbjct: 1   MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDS------------------ 60

Query: 61  PHLLLRPSGFPLFQTVLCNMILGYMDYLILSLFLCLLVWFEIGRSLPRRVELPDAYPYKS 120
                      L+Q                            G     +VELP+AYPYKS
Sbjct: 61  -----------LYQ----------------------------GGVWKIKVELPEAYPYKS 97

Query: 121 PSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMF 155
           PS+GF+NKIYHPNVDE SG+VCLDVINQTWSPMF
Sbjct: 121 PSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMF 97

[Close]

BLAST of CmoCh02G014730 vs. TAIR 10
Match: AT5G50870.1 (ubiquitin-conjugating enzyme 27 )

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-10
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 110 VELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFGGKTSLL 162
           + +PD YP++ P + F  K++HPN+   SG++CLD++   WSP    KT+L+
Sbjct: 56  ITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALV 107

[Close]

BLAST of CmoCh02G014730 vs. TAIR 10
Match: AT5G50870.2 (ubiquitin-conjugating enzyme 27 )

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-10
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 110 VELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFGGKTSLL 162
           + +PD YP++ P + F  K++HPN+   SG++CLD++   WSP    KT+L+
Sbjct: 56  ITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALV 107

The following BLAST results are available for this feature:

BLAST of CmoCh02G014730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42748	7.7e-35	54.55	Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 S...	[more]
P42749	1.4e-33	54.55	Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 S...	[more]
P16577	2.1e-32	52.60	Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum OX=4565 GN=UBC4 PE=1...	[more]
P42750	1.0e-31	49.35	Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 S...	[more]
Q9P7R4	2.9e-26	42.86	Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CmoCh02G014730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3W2	2.7e-35	59.09	ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita maxima OX=3661 GN=LOC1114914...	[more]
A0A6J1H475	2.7e-35	59.09	ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A5A7THI1	3.6e-35	58.44	Ubiquitin-conjugating enzyme E2 4-like isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0KNV9	3.6e-35	58.44	UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152970 PE...	[more]
A0A1S3AUA7	3.6e-35	58.44	ubiquitin-conjugating enzyme E2 4-like OS=Cucumis melo OX=3656 GN=LOC103482765 P...	[more]

BLAST of CmoCh02G014730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5538353.1	6.7e-36	57.50	hypothetical protein RHGRI_019065 [Rhododendron griersonianum]	[more]
KAG7016977.1	1.1e-35	58.60	Ubiquitin-conjugating enzyme E2 5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022958690.1	5.7e-35	59.09	ubiquitin-conjugating enzyme E2 4-like [Cucurbita moschata] >XP_023534777.1 ubiq...	[more]
XP_022996146.1	5.7e-35	59.09	ubiquitin-conjugating enzyme E2 4-like [Cucurbita maxima]	[more]
KAG7036029.1	5.7e-35	59.09	Ubiquitin-conjugating enzyme E2 5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmoCh02G014730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41340.1	5.5e-36	54.55	ubiquitin conjugating enzyme 4	[more]
AT1G63800.1	1.0e-34	54.55	ubiquitin-conjugating enzyme 5	[more]
AT2G46030.1	7.4e-33	49.35	ubiquitin-conjugating enzyme 6	[more]
AT5G50870.1	5.1e-10	40.38	ubiquitin-conjugating enzyme 27	[more]
AT5G50870.2	5.1e-10	40.38	ubiquitin-conjugating enzyme 27	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 3..164 e-value: 4.8E-18 score: 67.3
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 109..161
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 109..155 e-value: 1.7E-15 score: 56.9
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 48..164 score: 14.754826
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 3..153
None	No IPR available	PANTHER	PTHR24068:SF324	SUBFAMILY NOT NAMED	coord: 3..153
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBC_1	coord: 130..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G014730.1	CmoCh02G014730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044267	cellular protein metabolic process
molecular_function	GO:0016740	transferase activity