CmoCh02G014070 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G014070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cyclin-dependent kinases regulatory subunit
Location	Cmo_Chr02: 8350376 .. 8351998 (+)
RNA-Seq Expression	CmoCh02G014070
Synteny	CmoCh02G014070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAACCCTAGTTCAGTTCTAGTTTTCTGTTTAAATATCGTTTCATTTTGGGGATCGGAACCGTCGAATCTCCGCTCTACCTGTTTTTGTAATTCTCTCGGGAAGCCTAAGCTTAAGTTCTGGTAGATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGATGATACTTACGAGTATAGGTCCTGGATTCTTACTCTCAGTTTCTCGTCTTGGAGAATTGTTTGGAAGTGTTTAGTTCTTTGTATTCAATGGCTAACTATATTGATTGATACAGGCATGTGGTGCTCCCACCCGATGTGGCAAAGTTGCTTCCGAAGAATCGCCTTCTCTCGGAAGTAAGCAATTTAGTCTTATTCTTTATTTATGCCTATTAATTTTGTTGCGAAGGGAAGCATTCTCTGACTGTTTTTTTTTTAAATTGAATTCGATAGTTGGATTCTTAAATCAGGATTAATAAATGCGTCATCCTTGTTTAGACTGAATTCTCTCTTTCACTCTAAGAAGTTTTTGTTATGTAGTTTTCTAGTCTTTTAAACTTTTCATGGCGATCTTGATTTTCTCTCTTCATTTGGCTGATGATTGTTGAAAATTGAAACGGTGTTTATGTATATTTCGCATAATAGATATATCAAATAGGATTGATAATCCAGGGCTTAAGACTGTTGCGATAGAACCATCCCGGCCTCTCAATCGTGCATTCTCTGTGTGCAACCAGTGAGCAATGGACTTTACAATTAGCATAGGCACAGGAATATCGTTCATTATACCGTCAGTTCCTTTTGATTTTCTTGAATTTCTTAAAGAACATAAGTTAATCATTGTTCTAAACAAAAGGGTGCTTCCCAAATCTGTTCGAGTACTCATTTACTGGAAAGCATGTTGTTGTACTCCTAATCCTATAAATAATCAATCCTATGTGCAGAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGACCTGAGCCGCATATCATGCTATTCCGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAGAACGTGCTTGCTGCTAAATGATTGTTTCATTTTACTGATCATGTGGAGTGCTACTGGCAAGAAAGAAAGCAGTCAATATAAAGGTTTTAAAATGGAAAACCGTGCGCACTTTCCTGGTATCTGTGGTCAATCGTCCTGCCTAAAAAATATGCTGGAGTTTCTACGTTTACTCTGAACTCTGTATGGTTGTAGAGGTGGCTTATATATATATATATGCTTCTGTATCTTTGCTTGACTCTGCAATTCTATGGATTTAGAACCAGATGTGGGTTTGATGGATCTTGGTCCTTAACTTTCTGTGCTAAGGTAAATTGTTTATATGCTTCATCTTTCCCGATCTTACTGTTTCTGGAACAAAAGTTAGATTTTATCGACCATGAATCATTATCTTGCTCCTTTTCTTTTCTTTTTGCAAAATCCAGACTTGAAAATTTGCGTCACTTTAATGAATTGCTTGCTTATTAGAACTTGTGGAGTATAAGAGCCCATGATTCATTTGCTTCTTTGGTATAATTCAGCATCAAGCCTGCATTGATATGGAGGGAATGTGAGATTTTTTTACCAC

mRNA sequence

CTTCAACCCTAGTTCAGTTCTAGTTTTCTGTTTAAATATCGTTTCATTTTGGGGATCGGAACCGTCGAATCTCCGCTCTACCTGTTTTTGTAATTCTCTCGGGAAGCCTAAGCTTAAGTTCTGGTAGATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGATGATACTTACGAGTATAGGCATGTGGTGCTCCCACCCGATGTGGCAAAGTTGCTTCCGAAGAATCGCCTTCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGACCTGAGCCGCATATCATGCTATTCCGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAGAACGTGCTTGCTGCTAAATGATTGTTTCATTTTACTGATCATGTGGAGTGCTACTGGCAAGAAAGAAAGCAGTCAATATAAAGGTTTTAAAATGGAAAACCGTGCGCACTTTCCTGGTATCTGTGGTCAATCGTCCTGCCTAAAAAATATGCTGGAGTTTCTACGTTTACTCTGAACTCTGTATGGTTGTAGAGGTGGCTTATATATATATATATGCTTCTGTATCTTTGCTTGACTCTGCAATTCTATGGATTTAGAACCAGATGTGGGTTTGATGGATCTTGGTCCTTAACTTTCTGTGCTAAGGTAAATTGTTTATATGCTTCATCTTTCCCGATCTTACTGTTTCTGGAACAAAAGTTAGATTTTATCGACCATGAATCATTATCTTGCTCCTTTTCTTTTCTTTTTGCAAAATCCAGACTTGAAAATTTGCGTCACTTTAATGAATTGCTTGCTTATTAGAACTTGTGGAGTATAAGAGCCCATGATTCATTTGCTTCTTTGGTATAATTCAGCATCAAGCCTGCATTGATATGGAGGGAATGTGAGATTTTTTTACCAC

Coding sequence (CDS)

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGATGATACTTACGAGTATAGGCATGTGGTGCTCCCACCCGATGTGGCAAAGTTGCTTCCGAAGAATCGCCTTCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGACCTGAGCCGCATATCATGCTATTCCGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAGAACGTGCTTGCTGCTAAATGA

Protein sequence

MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK

Homology

[Close]

BLAST of CmoCh02G014070 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.8e-42
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDT+EYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQ 83
          EPHIMLFRRPLNYQQQQEN AQ
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]

BLAST of CmoCh02G014070 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-40
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of CmoCh02G014070 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-40
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of CmoCh02G014070 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-38
Identity = 70/78 (89.74%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDDT+EYRHVVLPP+VAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

[Close]

BLAST of CmoCh02G014070 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.5e-29
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 4  IQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+LPPDVAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of CmoCh02G014070 vs. ExPASy TrEMBL
Match: A0A6J1K8L9 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111491633 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of CmoCh02G014070 vs. ExPASy TrEMBL
Match: A0A6J1H322 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111459235 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of CmoCh02G014070 vs. ExPASy TrEMBL
Match: A0A6J1FYK0 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111448764 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.3e-43
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of CmoCh02G014070 vs. ExPASy TrEMBL
Match: A0A6J1JB14 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111484154 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.4e-43
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQN+LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNMLAAK 89

[Close]

BLAST of CmoCh02G014070 vs. ExPASy TrEMBL
Match: A0A059AAM5 (Cyclin-dependent kinases regulatory subunit (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00392 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
           MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 45  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 104

Query: 61  EPHIMLFRRPLNYQQQQENLAQQNVLA 88
           EPHIMLFRRPLNYQQQQEN AQQN+LA
Sbjct: 105 EPHIMLFRRPLNYQQQQENQAQQNMLA 131

[Close]

BLAST of CmoCh02G014070 vs. NCBI nr
Match: XP_022957804.1 (cyclin-dependent kinases regulatory subunit 1 [Cucurbita moschata] >XP_022996399.1 cyclin-dependent kinases regulatory subunit 1 [Cucurbita maxima] >XP_023534106.1 cyclin-dependent kinases regulatory subunit 1 isoform X3 [Cucurbita pepo subsp. pepo] >KAG6606027.1 Cyclin-dependent kinases regulatory subunit 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035974.1 Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.1e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of CmoCh02G014070 vs. NCBI nr
Match: XP_038902899.1 (cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 3.1e-43
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of CmoCh02G014070 vs. NCBI nr
Match: XP_022944260.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_023513375.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.7 bits (465), Expect = 6.8e-43
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of CmoCh02G014070 vs. NCBI nr
Match: XP_022986411.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQN+LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNMLAAK 89

[Close]

BLAST of CmoCh02G014070 vs. NCBI nr
Match: XP_028756892.1 (cyclin-dependent kinases regulatory subunit 1 [Prosopis alba] >XP_028788395.1 cyclin-dependent kinases regulatory subunit 1 [Prosopis alba])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQEN AQQN++AAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNMVAAK 89

[Close]

BLAST of CmoCh02G014070 vs. TAIR 10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1 )

HSP 1 Score: 170.6 bits (431), Expect = 5.6e-43
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDT+EYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQ 83
          EPHIMLFRRPLNYQQQQEN AQ
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]

BLAST of CmoCh02G014070 vs. TAIR 10
Match: AT2G27970.1 (CDK-subunit 2 )

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-39
Identity = 70/78 (89.74%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDDT+EYRHVVLPP+VAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

The following BLAST results are available for this feature:

BLAST of CmoCh02G014070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23249	7.8e-42	95.12	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XCH8	1.1e-40	95.06	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
Q6PS57	1.1e-40	95.06	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SJJ5	4.0e-38	89.74	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P55933	4.5e-29	81.82	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

BLAST of CmoCh02G014070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8L9	1.0e-44	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1H322	1.0e-44	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1FYK0	3.3e-43	96.63	Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JB14	7.4e-43	95.51	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A059AAM5	1.3e-42	97.70	Cyclin-dependent kinases regulatory subunit (Fragment) OS=Eucalyptus grandis OX=...	[more]

BLAST of CmoCh02G014070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957804.1	2.1e-44	100.00	cyclin-dependent kinases regulatory subunit 1 [Cucurbita moschata] >XP_022996399...	[more]
XP_038902899.1	3.1e-43	97.75	cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida]	[more]
XP_022944260.1	6.8e-43	96.63	cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_0235...	[more]
XP_022986411.1	1.5e-42	95.51	cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima]	[more]
XP_028756892.1	1.5e-42	95.51	cyclin-dependent kinases regulatory subunit 1 [Prosopis alba] >XP_028788395.1 cy...	[more]

BLAST of CmoCh02G014070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27960.1	5.6e-43	95.12	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	2.9e-39	89.74	CDK-subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 18..32 score: 62.05 coord: 3..17 score: 65.13 coord: 40..54 score: 75.9 coord: 55..69 score: 76.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 e-value: 8.5E-48 score: 174.8
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 e-value: 9.2E-36 score: 121.9
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 1..83 e-value: 5.2E-40 score: 137.7
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 1..83
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..86
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G014070.1	CmoCh02G014070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0007346	regulation of mitotic cell cycle
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity