CmoCh02G013680 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G013680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 8115458 .. 8118772 (+)
RNA-Seq Expression	CmoCh02G013680
Synteny	CmoCh02G013680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGCTATCTAGAAAAAGAAGAAACAAGTGCAGGAAATGGAGTGTTACATCTGATATGGGAGAATTCAAGACTGATTCTGGTAACTTATTGGTTTCATTTTTCCTAGGTGGATCCTTGGTTTTGAAGGTACAAGTAGACCATTCGCTTAGAAATCCATTGCAGGCATAGCGTTTCCCATCAAATACCAGGTTGCCACTACAGACTGGGCAACCTTCTAGGGCACCATAGAACAGCAAGTCTTGACTGCCAATGTGAGATCAGCTCAGCAAATGATACACGAAAAGAATGATTCACTGATATAAAGAAAAGCCTATGATGCTGCAGTTGTTGATATTAATGGAGTACCATTTAGAAGCAACCTCATAGTCAGGGCCAGTGGAGTCTTGCTCATTCATTTGCAGAATCTCTTTCATTTGATCAATGGAAATACTCTCTCTTGTAGCTTTACAGAACGATTCAAACTCGTCTGCAAGATCGGTTTCAGATTTGCAGTTCGGGCACCCATTTTCGTCTTCAGACTTCACTTTCTTAGGTGATTGTTCATTTTCATGTGTCTTGCTCTCTGCCTTTTGTTTCCTTGTCATTATCTTTTCTTCTTCACCAGAACCATGAGCGTGAGAATGGGATCTCTTTTCATGAACCTTCAAAATTTGTACACAAATTAGCTAATTTTCTTGAACTTTCTGACATTTCTTTTATGAACTTTCACTTGTGTTCTTTCTCTACTTGCAGAAACACCATTTTTGCATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGGTACCAATGTTAGTTGTTATTTTGATTTGAACTTCTACTAGTTCTTAGTTAGATGATTAAGCTGGAAAACACAAGACAGACGCATAAACATCAGAAGAACACTGATTTGGTTAAATGAGTAGCAAACCCATGAAACATTAACGCTAGAGATTCATAGAAACGAATGAAAGCGCATCTGTGTATATAATATAGAAGCTAAGAGGATCAAACCTTCATCTTTCAGTTTTTCTCTCTGTTTTGGATGAACACAGATGAGAGAGCAGCAAAAATAAAGCACTCCCCAACAAAGAAGGCAGTGAAAGGCAAAGCAATCAGATCCAAGTTTGAAGCTTGAAGCACTAAAGTTTAAGATTTGGAAAATAGCTGAAAGAGAGAGACCATTCCATGGATTTCCTTTAACGTTGCATAACTTTGTGATAGTGACAACTTCCGAGAGAGACACGTCCGTGCTTGTTCTTGACTTCTCTGTCAAACTAGTAGAATTCCATGTGTTATGGAGCACCAAAGTGAATACCACGTGTCCAATTGGATGCCTTTTGAAAGCCTCAGCTATTGACAGGTAGTGGAATGTAAACTGAGTTTTGTTTCTCTGTCCCTTCTGTAATACCTGCAGATTAATTTAGGATTGGACGCTCTAACCCAACCGCTAACTGATATTGTCCTCTTTAGACTTTTCTTTTCGAGCTTTCCCTCAACGTTTTAAAACGGGTTTGTTAGGAAGCCACACCCTTATAAAAAATGCTTTGTTATCCTCCCCAACTAAAGTGAGATCTCACAATCCACCCCTTTCAAGACCGATCCTGACACTCGTTTCCTTCTCCAATCGATATGTAGGACCCCTATTCTACTCCTTTTTGGGGCTCGTGTCCATCTCTCTTCGAGGCTCAACCTCCTCACTAGTAGACGCATTTTAAAAGCTTTGATGAGAAACTCGAAAGAAAAAACTTACATAGGACAATATCTATTAGCGGTGGGCTTGAGCGTGTTCACGACTAGAACCTCCAACATTGAAAATGTTGAATCAAATGTGTATCTACCTCTCATATGCAATGAAATCACTAGTGTTTCAGACACAACCATTACCTATAATATAATATATGGTGTTTCAGACAAAACCGTTCCTTGCTGTAAAATAGTGTCTCGGCCAAACCCATTACTTGCTGTAAAATTTTCAACATTTACACATAAAACTTTCCTCAATGTCGATAAAACAGATACTCTTCCCCCTCTTCACCAATCCATGCTTGCTGCCCTCCTCATTGTCATCAACCTCTCTGTTGGCTTCTGTCTCTTTTCCAGCTCCTTCCTCTGCATCATCTGCAACACAACACAATAATCTCATACCGAAAAGCTTCATAAAACCTACTCGAAAAATCTCGAAAAGATCGACTCGAATTGCTTGCCTCTTTCTGTCTATCCATTTCAGATTCAATCTGCATATTTGATGTTATTAAGATCAGGAAATGAAAGTCAAGAGAATGAATGTAATAACGCATGTTGAATGTTGCTAGAAAAAGACAACTTCACCAGTGTTTGCTTTAGTTTTTCATTCTCTTCTTTCAGCTGATTCAGTTCTGCTTCCAACTCCACTGTGTATGCCTGTAATCAACGATCATGACTCTAGTTAGTTCATTATATATTATCAATCTCTTACAGTTTGCTCTCTGTATCAGTGAATCATGATGATTAGACAAGCATGGGAACCTGTTTTCTAGCCCGAGATCGAGCAGCTGATTCCCGATTCTTGATCATCCTATGCTGCCTCCGCTGCACCACAAATTCTGGGGACCTATTAATGATCCTCTTCCTGCTGCTATGCTCACCCCAATCAGTCAAGCTTTGAGATATCTGAATTGAGCTGTTATCAGATGGCTCCACACCAACTGATGGGGTAAGCATTTGGTTAGTTGAAAACAAATTCCCAGGAAAGTTCATAGCAGCATTCTGATGATTATGATAAGACATGTTCTGCCCCAAATTTCCCCCCATCGAGCATGGCAGCTGCTTCATTGAAGAAGATGATGATGATTCTTGAACCATTCCAGCTTTGACCAAGAAATCCTCCAATGTCCGTTCTCCTAAACCCTGCTGGCTGTAGCATGGATTCTGCTGAATGTTCATGAACTTCTGCCATTGTGGGTATGTTTGTTCTGCCGAAGCTTGGCGAGACAGGGTTAGCCTTGAATTATTAATAGTATTGGCAGCCATGAAAGGGAGATTTTGAGGCTCATTTAATTCATTGGTTTGTGAGTGAATTTGGTTTTGAGTTCCTTCAACATTCCAGAGATTGGAAAGTATCTCATCCATGCCTAAACACCCAAAATTCTTCCCACTTTTGTACTGAATTTCATCAACTGGTTGAGATAAAATGGAGTTGTTTTTGTTCAGTGAAGAGATGAAATTGTCACTTAATACTCCATTTGATGGCGGCTGTGCTGCTGCTGCTGCTTCTGGTATCATTTGCCCAATCGCCATATGTTCAAATCCTGAATTCTCCATTTCTCCAACATGA

mRNA sequence

ATGTCTGGCTATCTAGAAAAAGAAGAAACAAGTGCAGGAAATGGAGTGTTACATCTGATATGGGAGAATTCAAGACTGATTCTGAACGATTCAAACTCGTCTGCAAGATCGGTTTCAGATTTGCAGTTCGGGCACCCATTTTCGTCTTCAGACTTCACTTTCTTAGAAACACCATTTTTGCATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGATGAGAGAGCAGCAAAAATAAAGCACTCCCCAACAAAGAAGGCAGTGAAAGGCAAAGCAATCAGATCCAATGAAGAGATGAAATTGTCACTTAATACTCCATTTGATGGCGGCTGTGCTGCTGCTGCTGCTTCTGGTATCATTTGCCCAATCGCCATATGTTCAAATCCTGAATTCTCCATTTCTCCAACATGA

Coding sequence (CDS)

ATGTCTGGCTATCTAGAAAAAGAAGAAACAAGTGCAGGAAATGGAGTGTTACATCTGATATGGGAGAATTCAAGACTGATTCTGAACGATTCAAACTCGTCTGCAAGATCGGTTTCAGATTTGCAGTTCGGGCACCCATTTTCGTCTTCAGACTTCACTTTCTTAGAAACACCATTTTTGCATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGATGAGAGAGCAGCAAAAATAAAGCACTCCCCAACAAAGAAGGCAGTGAAAGGCAAAGCAATCAGATCCAATGAAGAGATGAAATTGTCACTTAATACTCCATTTGATGGCGGCTGTGCTGCTGCTGCTGCTTCTGGTATCATTTGCCCAATCGCCATATGTTCAAATCCTGAATTCTCCATTTCTCCAACATGA

Protein sequence

MSGYLEKEETSAGNGVLHLIWENSRLILNDSNSSARSVSDLQFGHPFSSSDFTFLETPFLHQVDFSKDLADSLMEFTDERAAKIKHSPTKKAVKGKAIRSNEEMKLSLNTPFDGGCAAAAASGIICPIAICSNPEFSISPT

Homology

[Close]

BLAST of CmoCh02G013680 vs. NCBI nr
Match: KAG6605988.1 (hypothetical protein SDJN03_03305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 29  NDSNSSARSVSDLQFGHPFSSSDFTFLETPFLHQVDFSKDLADSLMEFTDERAAKIKHSP 88
           NDSNSSARSVSDLQFG PFSSSDFTFLETPFL+QVDFSKDLADSLMEFTDERAAKIKHSP
Sbjct: 11  NDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTDERAAKIKHSP 70

Query: 89  TKKAVKGKAIRSNEE 104
           TKKAVKGKAIRS  E
Sbjct: 71  TKKAVKGKAIRSKFE 85

[Close]

BLAST of CmoCh02G013680 vs. NCBI nr
Match: KAG7035938.1 (hypothetical protein SDJN02_02738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-28
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 29  NDSNSSARSVSDLQFGHPFSSSDFTFLETPFLHQVDFSKDLADSLMEFTDERAAKIKHSP 88
           NDSNSSARSVSDLQFG PFSSSDFTFLETPFL+QVDFSKDLADSLMEFTDERAAKIKHSP
Sbjct: 11  NDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTDERAAKIKHSP 70

Query: 89  TKKAVKGKAIRS 101
           TKKAVKGKAIRS
Sbjct: 71  TKKAVKGKAIRS 82

The following BLAST results are available for this feature:

BLAST of CmoCh02G013680 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G013680 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G013680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605988.1	1.5e-28	94.67	hypothetical protein SDJN03_03305, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035938.1	2.6e-28	97.22	hypothetical protein SDJN02_02738, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh02G013680 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G013680.1	CmoCh02G013680.1	mRNA