CmoCh02G012470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G012470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
Location	Cmo_Chr02: 7484711 .. 7488609 (+)
RNA-Seq Expression	CmoCh02G012470
Synteny	CmoCh02G012470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTGGACGGGGCTCATTTTCTCGAACCCATGGCCTTTGGCTATGACAGTGTTCGCTAATTAACAGTATTGAGTGACAGAACGAGTGGCGCACAACAGAGAGAAGATGATGGCGTCTTCTTCTCATCTATCCGCCATTCCCCTGCGCTCCTCTTCCTCCTCTAGACCTTCCTTATCCCACTGTGAGCTCTCTCTCCCTCTCTTCTTATCGCATATGTATACTCAGTTACTGACATAGCAGCTGCCATGTTTTTTTCTTTGTGGTTGATTAGCTGATTTGCCTTCGGTTCGTTTCACTTTGTGGACTGTTTCTGTATAAACTTATCCTTCCTTCATCGAGTTTTGTTATGGTGCTTTTCGTCCCCTTCTGCAATTGTTCTTTCACTCTGGGTTTAATTCGCTTGTTAACCAAGAGCTAAAGAACTGCTAATCTAATCCCAACTTATCCTTTAGCTCTGTTACAAATGGGTTTTCCTTTTCGTGTTTGATTTTGGTCCAACAACACTTTTGGTCCATGTAATTTCATTAAAATAGGGATTTAGTTCACAAACATCAGTTTGTAATGATTTAGTACTAATACTCTCAAATTTGTTACTACTTAATCTCTAGATTACATTTTAGTATGCCATTTTTAAATCTGTAACCATTTAGTTCATATTGTGAAAAATGTTGTTAAGATTTACTGGAATTTAGATGAATAAATACATTAGTGACCATGTGTTTATAACTATGAATAAATAGTTACAAAATAAAAAAGTGGTACTAAATTTCAACAAGATTTTTCACATTACAGACTAGATCTTGGGAGTTAAGTTGGCCTATACTTTGGGACAATTGTTTCATATTAAAGTTCAACTAAATTGGTTCATTTCCTGGTTTAAGATACTGGACATATCTACGTTTTCAAGTCTATGTCAATGGAAAATTTTGACCTTCCTTTGCCCAAACTGAACAGCTAACTCAAAGCCCGTTGTACTTCAAGTGACATCAAATCTTGATGATGAAAGCTCTACTACTGGAGATTCAAGTACACCATCAAAACCGCTAAAGGTAAGGATCCTGTTTACTGATGTTTCTTTCTAGCTTTCTTTCACCGCAACAACAGCTCGTTCATGAGAGTAATTCTTGCTTTGATTTACAGCCACAATGTTTCACAGGGCTAGCAACTAGTTTAGTTCACATCAAGTGTATTTCCTTGCATGATGTGCATCTTTTGACAGCTCTAATCACTCACTATTTATAACTAAATATGGTCAATTTAATTTTTGGAATGCTCGTAGTTCATCTTTGAAGCATGCCTTGCGTCACAGCCTTTTAGATTGTTGGAAGAGGGTGGTCGACAAAAGTATAATACCAATGGAATATGAGAAGGTGCAAGAGCCTTGTAGATCATCAGTTCTTGAAACCAATCAATTAACCGTCTTTTAGAAAGCGACTCTTTAGCTGTATCTTCAAGTCTGATATGATCTTCAAGTAATATAAATATAATCTCTGTGTGACAGAATTGAGATGTAAATGTATGGCTCTATTCGTATATAGTCTAGAGTAGATTACTACAATCTTAACTTCCAATTAGTATTATAAAACAACTGTTTTGACCACAGGGAACTCGAATCTTGATCTCTCGTCGATGGTGCCTCACATGTTTGTGTTCGTCTCCGACATTGATAAAGGATTATGGGGGCACAATGGCTGAAGCTATTGCAAATACCATGGATGGAAAACCTGCGTGCAGAAACTGTGGAGGAAGTGGTGCCGTACTTTGTAAGCATGTTTTTTCTTCATTTGTTTAGTTATGACTGTTGTCTGGTCAAAATTTTTATCAAGTTTTTCCACATATGAGCGTTAAAAAGACCGTTTCTCGTTTTTTTATGCTGTTTGATGAGAATATTGTACCTCGTTATCTATTTGTGCTTCCTATTTTCCCTGAGATGCTTACTGTTCTTCTTTTTAGGTGACATGTGCGGTGGTACAGGGAAATGGAAAGCTCTTAACAGAAAACGGGCGAAAGATGTCTACGAGTTCACAGAATGTCCTAATTGTTATGGTAATTCATCTCTATCTGCAAATGATGGTGCTCTGTTATCATCAATGAATGCTTGCATATATTTTCATGCTTTCAGTTGGATACAACTTCACCTCTGCTAGAAACCTCTTATCCTGTTGTTATAGCCTTGAGATGCAGAAAATTGAATGCTTATTGTTATTTTTCTCATCAAGAAAGTTAAACTTTAGCCGATGGTGTATTCACCTTGCTTCTTCTCATACAATCAATCATTTGATAGTTAGTTGCCGAGATAATACACTTGTATCTCTAGTACATCTTGTGCAGATAGCCAATTCTTTTGGAATAACCTTCATTCACTGGGGCAGTAATCTAGGATCCTATTGTAACGGACAAAGCCCACTGTTAGAAGATATCGTCTTCTTTAGATTTTTCCTTCCGGGCTTCCCCTCAATGTTTTAAAACGGTTATGCTAGGGAGAGGTTTTCACACCCTTATAAAGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCTTCAAGGCTCAGCATCCTCGCGGGCGCTTATTTCTCTCTTCAATCGATGTGGGATCTCACAATCTACCACGCTAGCACTTGTTCCTCTCTGCAATCGATGTGGGATCTCACAATCCACCTCCCTTTGAGGCCTAGCGTCCTTGCTGGCACACCGCTCAGTGTCCACCCCGTTCGGGGCTTAGTGTCTTTGCTGGCACACCATCCGGTGTCTGGCTCAAGCCCACCGCTAGCAGAAATTTTCCTCTTTAGGCTTTCTCTTCTGGGCTTCCCCTCAATCTTTTAAACCACGTCTGCGAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCATTTCTCTCTCCAACCAATGTGGGATCTCATAATCCACCCCCCTTCGAGGCTCAGCGTCCTCACTGACACTCATTTCCCTCTCCAATCGATGTGGGATCTCACACCTATCATCCTTAAATCGCCTTTTTTGCATCTTGTGTGTTTGTTTGAGACTTGATTAAGTTTTTCTTTCTCTCCCCAATTTGGAACTATCAAGAGATGTACGTATATAGATATTAAAGATTTCCTTGTACATCCCAGTTTCCTAATTAGAAAAAAGGTTTCCTTGGGCATCATCACATCAATATTCTGCAACTTCTGCTGGATTGGTTTTATACTGACTGCCAAATTGTTCATATATGTTGGCTGCCAAATTGTCCATATCCCAAATCTGAAGAAAAAACCTTGGTTGATCATTCACTTAGCTGTTCATCAAAAGCAGCCGAACGTTATAGTCAGCTTACGACTTCGATTTTAACATGCTAACAGTAGAAAGAAAAATCACAGGCTGAAGAATAAATATGAAAAGAACATTCATAGTTCATGCATTATAAACGAGCAATCTTGAACTACCAATCTAAATTTGATCATTATACTTCTTCGAAATGGTTGTATTGCAACTCTAGGTATTCGAATCTATGATCGTTTGATCTTGTTTGTGTTATTTGGTTTTCTATCTTCATCTCTCTTATCTTGAGCTGATTCTAAACTTGTTGTGGCAGGTAGAGGAAAACTTGTATGTCCTGTATGTCTAGGAACTGGTTTACCAAACAACAAAGGTCTTTTACGAAGGCCGGACGCACGAAAATTGCTCGATAAGATGTTCAATGGTCGCTTGTTACCAAATTCTTAAACTTCATGTCTCTATATGTATTGATGATAGATTTATAAGTTACATAATTGCGGCTTTTGTGGCAGAATTCAGTGAGTGTAAAAACAAAGCTCTAAGTTATAGATGGCTATCTTCTTCAATGCTGAATTACAGTGTCTTGAATCGTCACATGCAGAAAATAATGAATCCCTGAAGCCTTC

mRNA sequence

TGGTGGACGGGGCTCATTTTCTCGAACCCATGGCCTTTGGCTATGACAGTGTTCGCTAATTAACAGTATTGAGTGACAGAACGAGTGGCGCACAACAGAGAGAAGATGATGGCGTCTTCTTCTCATCTATCCGCCATTCCCCTGCGCTCCTCTTCCTCCTCTAGACCTTCCTTATCCCACTCTAACTCAAAGCCCGTTGTACTTCAAGTGACATCAAATCTTGATGATGAAAGCTCTACTACTGGAGATTCAAGTACACCATCAAAACCGCTAAAGGGAACTCGAATCTTGATCTCTCGTCGATGGTGCCTCACATGTTTGTGTTCGTCTCCGACATTGATAAAGGATTATGGGGGCACAATGGCTGAAGCTATTGCAAATACCATGGATGGAAAACCTGCGTGCAGAAACTGTGGAGGAAGTGGTGCCGTACTTTGTGACATGTGCGGTGGTACAGGGAAATGGAAAGCTCTTAACAGAAAACGGGCGAAAGATGTCTACGAGTTCACAGAATGTCCTAATTGTTATGGTAGAGGAAAACTTGTATGTCCTGTATGTCTAGGAACTGGTTTACCAAACAACAAAGGTCTTTTACGAAGGCCGGACGCACGAAAATTGCTCGATAAGATGTTCAATGGTCGCTTGTTACCAAATTCTTAAACTTCATGTCTCTATATGTATTGATGATAGATTTATAAGTTACATAATTGCGGCTTTTGTGGCAGAATTCAGTGAGTGTAAAAACAAAGCTCTAAGTTATAGATGGCTATCTTCTTCAATGCTGAATTACAGTGTCTTGAATCGTCACATGCAGAAAATAATGAATCCCTGAAGCCTTC

Coding sequence (CDS)

ATGATGGCGTCTTCTTCTCATCTATCCGCCATTCCCCTGCGCTCCTCTTCCTCCTCTAGACCTTCCTTATCCCACTCTAACTCAAAGCCCGTTGTACTTCAAGTGACATCAAATCTTGATGATGAAAGCTCTACTACTGGAGATTCAAGTACACCATCAAAACCGCTAAAGGGAACTCGAATCTTGATCTCTCGTCGATGGTGCCTCACATGTTTGTGTTCGTCTCCGACATTGATAAAGGATTATGGGGGCACAATGGCTGAAGCTATTGCAAATACCATGGATGGAAAACCTGCGTGCAGAAACTGTGGAGGAAGTGGTGCCGTACTTTGTGACATGTGCGGTGGTACAGGGAAATGGAAAGCTCTTAACAGAAAACGGGCGAAAGATGTCTACGAGTTCACAGAATGTCCTAATTGTTATGGTAGAGGAAAACTTGTATGTCCTGTATGTCTAGGAACTGGTTTACCAAACAACAAAGGTCTTTTACGAAGGCCGGACGCACGAAAATTGCTCGATAAGATGTTCAATGGTCGCTTGTTACCAAATTCTTAA

Protein sequence

MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTRILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRLLPNS

Homology

[Close]

BLAST of CmoCh02G012470 vs. ExPASy Swiss-Prot
Match: O64750 (Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSA2 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-52
Identity = 113/190 (59.47%), Postives = 136/190 (71.58%), Query Frame = 0


Query: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSK---PLK 60
           M ASSSHL A+P    S + P LS  N   V +   S  +++S  + DS + S+     +
Sbjct: 1   MAASSSHLFALP----SPASPFLSAPNRNRVRVLAKSCPENQSFDSNDSDSSSETTHKAQ 60

Query: 61  GTRILISRR-WCLTCLCSSPTLIKDYGGTMAEAIANTMDGKP--ACRNCGGSGAVLCDMC 120
           G +  +SRR W   C+C+S  LI +    ++   A  +D KP  +CRNC GSGAVLCDMC
Sbjct: 61  GDQKSVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMC 120

Query: 121 GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDK 180
           GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP AR+LL+K
Sbjct: 121 GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEK 180

Query: 181 MFNGRLLPNS 185
           M+NGRLLP+S
Sbjct: 181 MYNGRLLPDS 186

[Close]

BLAST of CmoCh02G012470 vs. ExPASy Swiss-Prot
Match: Q6YUA8 (Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSA2 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.5e-50
Identity = 104/171 (60.82%), Postives = 121/171 (70.76%), Query Frame = 0


Query: 17  SSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTRILISRRWCLTCLCSSP 76
           S  RP+ +H  +K        +  D++     S   +   +  +   SRR CL CLC + 
Sbjct: 18  SIRRPAAAHRPAKARSHISCCSRHDDAEACSTSKPLTNGKEEEKTTPSRRKCLACLC-AV 77

Query: 77  TLIKDYGGTM--AEAIANTMDGKPA-CRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYE 136
           TLI   G TM     +A+ M  KPA CRNC GSGAVLCDMCGGTGKWKALNRKRAKDVY 
Sbjct: 78  TLISASGPTMLTPNGLASDMMSKPAVCRNCNGSGAVLCDMCGGTGKWKALNRKRAKDVYL 137

Query: 137 FTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRLLPNS 185
           FTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDA+KLLDKM+NG++LP+S
Sbjct: 138 FTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAKKLLDKMYNGKILPDS 187

[Close]

BLAST of CmoCh02G012470 vs. ExPASy Swiss-Prot
Match: A0A1D6KL43 (Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Zea mays OX=4577 GN=PSA2 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.9e-48
Identity = 91/124 (73.39%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 64  SRRWCLTCLCSSPTLIKDYG---GTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 123
           SRR CL CL  + TLI   G   G  A+A+      K  CRNC GSGAV+CDMCGGTGKW
Sbjct: 74  SRRRCLVCL-GAVTLISATGPPNGLAADAMNKAGVQKAVCRNCNGSGAVICDMCGGTGKW 133

Query: 124 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 183
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP+A++LLDKM+NG++
Sbjct: 134 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPEAKQLLDKMYNGKI 193

Query: 184 LPNS 185
           LP S
Sbjct: 194 LPRS 196

[Close]

BLAST of CmoCh02G012470 vs. ExPASy Swiss-Prot
Match: B5YAR4 (Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-06
Identity = 26/83 (31.33%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 84  GTMAEAIANTMDGKPACRNCG---GSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 143
           G+  E     ++  P C+  G   G+  V CDMC GTG+ + + +       + T CP C
Sbjct: 146 GSEKEIYVTRLETCPTCKGKGTEPGTNPVKCDMCNGTGQIRNMRQTPFGQFVQITTCPKC 205

Query: 144 YGRGKLV---CPVCLGTGLPNNK 161
           +G G+++   C  C GTG    K
Sbjct: 206 HGTGQIIINPCHECHGTGKVRRK 228

[Close]

BLAST of CmoCh02G012470 vs. ExPASy TrEMBL
Match: A0A6J1H182 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459453 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 9.4e-101
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 60
           MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR
Sbjct: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 60

Query: 61  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
           ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 61  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL
Sbjct: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 180

Query: 181 LPNS 185
           LPNS
Sbjct: 181 LPNS 184

[Close]

BLAST of CmoCh02G012470 vs. ExPASy TrEMBL
Match: A0A6J1KA92 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491517 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 60
           MMASSSHLSAIPLRSSSSSRP LSHSNSKPVVLQVTSNLDDES +TGD STPSKPLKGT 
Sbjct: 1   MMASSSHLSAIPLRSSSSSRPFLSHSNSKPVVLQVTSNLDDESCSTGDLSTPSKPLKGTP 60

Query: 61  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
           ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 61  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL
Sbjct: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 180

Query: 181 LPNS 185
           LPNS
Sbjct: 181 LPNS 184

[Close]

BLAST of CmoCh02G012470 vs. ExPASy TrEMBL
Match: A0A0A0KX46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285690 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 166/185 (89.73%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 2   MASSSHLSAIPL-RSSSSSRPSLSHS-NSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGT 61
           MASSSHLSAIPL R SSSS PSLSHS N KPVVL VTSN DDES +TGDS TPSKPLKGT
Sbjct: 1   MASSSHLSAIPLRRPSSSSPPSLSHSANLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT 60

Query: 62  RILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 121
           + LISRRWCLTCLCSS TL+K YGGT+ EAIANTMDGKPACRNCGGSGAVLCDMCGGTGK
Sbjct: 61  QKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120

Query: 122 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGR 181
           WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM+NGR
Sbjct: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR 180

Query: 182 LLPNS 185
           LLPNS
Sbjct: 181 LLPNS 185

[Close]

BLAST of CmoCh02G012470 vs. ExPASy TrEMBL
Match: A0A1S4DYE8 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491567 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.0e-87
Identity = 165/184 (89.67%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MMASSSHLSAIPL-RSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGT 60
           MMASSSHLSAIPL R SSSS PSLSHSNSKPVVL +TSN DDES +TGDS TPSKPLKGT
Sbjct: 1   MMASSSHLSAIPLRRPSSSSTPSLSHSNSKPVVLHLTSNSDDESCSTGDSRTPSKPLKGT 60

Query: 61  RILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120
           + LISRRWCLTCLCSS TL+K+YGGT  EAIANTMDGKP CRNCGGSGAVLCDMCGGTGK
Sbjct: 61  QNLISRRWCLTCLCSSVTLMKNYGGT-TEAIANTMDGKPVCRNCGGSGAVLCDMCGGTGK 120

Query: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGR 180
           WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM+NGR
Sbjct: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR 180

Query: 181 LLPN 184
           LLPN
Sbjct: 181 LLPN 183

[Close]

BLAST of CmoCh02G012470 vs. ExPASy TrEMBL
Match: A0A6J1DK36 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021269 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.5e-85
Identity = 160/185 (86.49%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MMASSSHLSAIPLR-SSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGT 60
           MMASSSHLSAIPLR SS+S+R +LSH+ SKP+VL  TSNLD+ES ++GDS+TPSKPLKGT
Sbjct: 1   MMASSSHLSAIPLRLSSTSTRTNLSHAKSKPIVLNGTSNLDNESCSSGDSNTPSKPLKGT 60

Query: 61  RILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120
           + LISRRWCLTCLCSS TLIKD+GGT   A ANTMDGKP CRNCGGSGAVLCDMCGGTGK
Sbjct: 61  QFLISRRWCLTCLCSSMTLIKDFGGTTG-ASANTMDGKPVCRNCGGSGAVLCDMCGGTGK 120

Query: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGR 180
           WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKM+NGR
Sbjct: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR 180

Query: 181 LLPNS 185
           LLPNS
Sbjct: 181 LLPNS 184

[Close]

BLAST of CmoCh02G012470 vs. NCBI nr
Match: XP_022958131.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata] >XP_023532563.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6605877.1 Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035828.1 Protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.9 bits (964), Expect = 1.9e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 60
           MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR
Sbjct: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 60

Query: 61  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
           ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 61  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL
Sbjct: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 180

Query: 181 LPNS 185
           LPNS
Sbjct: 181 LPNS 184

[Close]

BLAST of CmoCh02G012470 vs. NCBI nr
Match: XP_022996228.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 365.2 bits (936), Expect = 3.4e-97
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 60
           MMASSSHLSAIPLRSSSSSRP LSHSNSKPVVLQVTSNLDDES +TGD STPSKPLKGT 
Sbjct: 1   MMASSSHLSAIPLRSSSSSRPFLSHSNSKPVVLQVTSNLDDESCSTGDLSTPSKPLKGTP 60

Query: 61  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
           ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 61  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL
Sbjct: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 180

Query: 181 LPNS 185
           LPNS
Sbjct: 181 LPNS 184

[Close]

BLAST of CmoCh02G012470 vs. NCBI nr
Match: XP_011653566.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X2 [Cucumis sativus] >KAE8649480.1 hypothetical protein Csa_018113 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 166/184 (90.22%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 2   MASSSHLSAIPL-RSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 61
           MASSSHLSAIPL R SSSS PSLSHSN KPVVL VTSN DDES +TGDS TPSKPLKGT+
Sbjct: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60

Query: 62  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 121
            LISRRWCLTCLCSS TL+K YGGT+ EAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120

Query: 122 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 181
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM+NGRL
Sbjct: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180

Query: 182 LPNS 185
           LPNS
Sbjct: 181 LPNS 184

[Close]

BLAST of CmoCh02G012470 vs. NCBI nr
Match: XP_004142153.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 3.2e-87
Identity = 166/185 (89.73%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 2   MASSSHLSAIPL-RSSSSSRPSLSHS-NSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGT 61
           MASSSHLSAIPL R SSSS PSLSHS N KPVVL VTSN DDES +TGDS TPSKPLKGT
Sbjct: 1   MASSSHLSAIPLRRPSSSSPPSLSHSANLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT 60

Query: 62  RILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 121
           + LISRRWCLTCLCSS TL+K YGGT+ EAIANTMDGKPACRNCGGSGAVLCDMCGGTGK
Sbjct: 61  QKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120

Query: 122 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGR 181
           WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM+NGR
Sbjct: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR 180

Query: 182 LLPNS 185
           LLPNS
Sbjct: 181 LLPNS 185

[Close]

BLAST of CmoCh02G012470 vs. NCBI nr
Match: XP_016900745.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 4.2e-87
Identity = 165/184 (89.67%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MMASSSHLSAIPL-RSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGT 60
           MMASSSHLSAIPL R SSSS PSLSHSNSKPVVL +TSN DDES +TGDS TPSKPLKGT
Sbjct: 1   MMASSSHLSAIPLRRPSSSSTPSLSHSNSKPVVLHLTSNSDDESCSTGDSRTPSKPLKGT 60

Query: 61  RILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120
           + LISRRWCLTCLCSS TL+K+YGGT  EAIANTMDGKP CRNCGGSGAVLCDMCGGTGK
Sbjct: 61  QNLISRRWCLTCLCSSVTLMKNYGGT-TEAIANTMDGKPVCRNCGGSGAVLCDMCGGTGK 120

Query: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGR 180
           WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM+NGR
Sbjct: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR 180

Query: 181 LLPN 184
           LLPN
Sbjct: 181 LLPN 183

[Close]

BLAST of CmoCh02G012470 vs. TAIR 10
Match: AT2G34860.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-53
Identity = 113/190 (59.47%), Postives = 136/190 (71.58%), Query Frame = 0


Query: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSK---PLK 60
           M ASSSHL A+P    S + P LS  N   V +   S  +++S  + DS + S+     +
Sbjct: 1   MAASSSHLFALP----SPASPFLSAPNRNRVRVLAKSCPENQSFDSNDSDSSSETTHKAQ 60

Query: 61  GTRILISRR-WCLTCLCSSPTLIKDYGGTMAEAIANTMDGKP--ACRNCGGSGAVLCDMC 120
           G +  +SRR W   C+C+S  LI +    ++   A  +D KP  +CRNC GSGAVLCDMC
Sbjct: 61  GDQKSVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMC 120

Query: 121 GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDK 180
           GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP AR+LL+K
Sbjct: 121 GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEK 180

Query: 181 MFNGRLLPNS 185
           M+NGRLLP+S
Sbjct: 181 MYNGRLLPDS 186

[Close]

BLAST of CmoCh02G012470 vs. TAIR 10
Match: AT2G34860.2 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-53
Identity = 113/190 (59.47%), Postives = 136/190 (71.58%), Query Frame = 0


Query: 1   MMASSSHLSAIPLRSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSK---PLK 60
           M ASSSHL A+P    S + P LS  N   V +   S  +++S  + DS + S+     +
Sbjct: 1   MAASSSHLFALP----SPASPFLSAPNRNRVRVLAKSCPENQSFDSNDSDSSSETTHKAQ 60

Query: 61  GTRILISRR-WCLTCLCSSPTLIKDYGGTMAEAIANTMDGKP--ACRNCGGSGAVLCDMC 120
           G +  +SRR W   C+C+S  LI +    ++   A  +D KP  +CRNC GSGAVLCDMC
Sbjct: 61  GDQKSVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMC 120

Query: 121 GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDK 180
           GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP AR+LL+K
Sbjct: 121 GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEK 180

Query: 181 MFNGRLLPNS 185
           M+NGRLLP+S
Sbjct: 181 MYNGRLLPDS 186

[Close]

BLAST of CmoCh02G012470 vs. TAIR 10
Match: AT5G06130.1 (chaperone protein dnaJ-related )

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-05
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 97  KPACRNCGGSGAVLCDMCGGTGKWKALN---RKRAKD----VYEFTECPNCYGRGKLVCP 156
           K  C+ C G+G + C  C  +G   +++   R RA +    V     C NC G GK++CP
Sbjct: 151 KKRCKYCLGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCP 210

[Close]

BLAST of CmoCh02G012470 vs. TAIR 10
Match: AT5G06130.2 (chaperone protein dnaJ-related )

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-05
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 97  KPACRNCGGSGAVLCDMCGGTGKWKALN---RKRAKD----VYEFTECPNCYGRGKLVCP 156
           K  C+ C G+G + C  C  +G   +++   R RA +    V     C NC G GK++CP
Sbjct: 235 KKRCKYCLGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCP 294

[Close]

BLAST of CmoCh02G012470 vs. TAIR 10
Match: AT5G03870.1 (Glutaredoxin family protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.6e-04
Identity = 20/68 (29.41%), Postives = 31/68 (45.59%), Query Frame = 0


Query: 84  GTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGR 143
           G + E I     G   CR CGG   ++C +C G+ K +   +K         +C  C   
Sbjct: 322 GILLEGIPAARLGGSCCRGCGGMRFMMCVVCNGSCKVREEEKK------SMVKCLKCNEN 381

Query: 144 GKLVCPVC 152
           G ++CP+C
Sbjct: 382 GLVLCPIC 383

The following BLAST results are available for this feature:

BLAST of CmoCh02G012470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64750	2.0e-52	59.47	Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6YUA8	9.5e-50	60.82	Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Oryza sativa subsp. japonica ...	[more]
A0A1D6KL43	8.9e-48	73.39	Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Zea mays OX=4577 GN=PSA2 PE=2...	[more]
B5YAR4	6.4e-06	31.33	Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 396...	[more]

BLAST of CmoCh02G012470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H182	9.4e-101	100.00	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KA92	1.7e-97	97.28	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KX46	1.6e-87	89.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285690 PE=4 SV=1	[more]
A0A1S4DYE8	2.0e-87	89.67	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X1 OS=Cucumis mel...	[more]
A0A6J1DK36	2.5e-85	86.49	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Momordica charantia OX...	[more]

BLAST of CmoCh02G012470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958131.1	1.9e-100	100.00	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata] >XP_0235325...	[more]
XP_022996228.1	3.4e-97	97.28	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita maxima]	[more]
XP_011653566.1	1.3e-88	90.22	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X2 [Cucumis sativus] >KA...	[more]
XP_004142153.1	3.2e-87	89.73	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_016900745.1	4.2e-87	89.67	PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X1 [Cu...	[more]

BLAST of CmoCh02G012470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34860.1	1.4e-53	59.47	DnaJ/Hsp40 cysteine-rich domain superfamily protein	[more]
AT2G34860.2	1.4e-53	59.47	DnaJ/Hsp40 cysteine-rich domain superfamily protein	[more]
AT5G06130.1	7.3e-05	35.82	chaperone protein dnaJ-related	[more]
AT5G06130.2	7.3e-05	35.82	chaperone protein dnaJ-related	[more]
AT5G03870.1	3.6e-04	29.41	Glutaredoxin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 15..183
None	No IPR available	PANTHER	PTHR15852:SF56	PROTEIN PHOTOSYSTEM I ASSEMBLY 2, CHLOROPLASTIC	coord: 15..183
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 99..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G012470.1	CmoCh02G012470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0047134	protein-disulfide reductase (NAD(P)) activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0051082	unfolded protein binding