CmoCh02G012430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G012430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	splicing factor 1-like isoform X2
Location	Cmo_Chr02: 7465999 .. 7472596 (+)
RNA-Seq Expression	CmoCh02G012430
Synteny	CmoCh02G012430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAATTTCCCGGAGCACTTTGTGTGCTCTCGTAAGTGCGTCAATTCTTCATTGTGGATTCAGTTTTGAAGAACGCAGCGGTTCAGGTACTTTCATCTCTCTACTGTTTGGTTTTTGTTTGGTTCTTGAGACGACTTGGGGCAAGGGAAAGAAAATGGACTTCTAATTGACAAATTCTTAGCCCCCTTGTCGCCGGTGCAACCTCAAAATAAGCTACAAATTTGTGTTTTGCATGATCATTCTTTATTAAGCCTTGTAATTCAATGGGAGCTAGAACTTTGTTGTCTTTGAGACCAGCAGCTAAGATTTGCAATCTGTGGGGTGGAGGTGTTTTCTTGTAAAGATATCATTATCTAACTTCATGAATCACGATCAGGAATAATATCGTGTTCTAGAGAATGCGTCAATGTGATTATAATATTGTGTGTGCTATGCGGACAAAAATGGTTGTTCAGTGTAAATCGAAGCACAATCGAGTTTCCTTGCAGTGGCAGGTTCAGCTTCGACTGGTAAATAGGCAATCACTGCACTTTAGTTGGCTAAGGACATTATTTGTTGGAAACATCTGGGATTTTTTGTTCTGTTTTGTTTTGTTTTGTTTTTTGTTGTATCCACCAGGGATCTGAGTTTTTCTCTCCTCATCATGATGAGAAGAACACATGAAAGTTATATATATTTATGGCAAGCTCAGCTATTTACATTTATCAATTTTCTAAGCATCAAGCTAGAATTTTTCCCTGGATAGTTACCCCCTCCCTATTACCCACATTTCATTCTTTGAACCGTTATAATATATTATTATACTCGGGGTCATGCAAGTTTCTCGTTCCTTTGTTCTATTGTTCATGAATACTTTACACAGGGTGTAAAATGGCAATTACAAGTTTATTTGTACTTGAGGTTTTCTCACATAGGATATATCTTTTGTTTTTTAGGTGATTGGAGAACAATATGAGTGCAGAGGTTGAAAAGACGTCGCATATTGAACCGGGAAATGCAAAGATGTCTGGAGCAACTAATTCATCTGCTGCACCAATGGGAAGCCAAAAGGTTTCCATGTTTGCAGCGAAGACTGGGTTTGTTATACCAAAAAACAAGCTTTCAGGATCTTTGGTTCCCGTCTTTCGAGTGAACAAGAAGTTGGGAGGGAATGAATCAGCTAATGGAGAAAATGAGAAACAGTCTCAAAGAAAAACAAAGTGGGGTCCTGATCTAACACAGGATTCTGCAGTTAGAAGGGGGAGGCTCATAGCTTATCAGGTATTTGTGGAGCACTCTCTCTTTTCCTTTTCTATGTATCCATGTATCCGTGCCACGTGTTAAAGGCACAACTCAAAGTCAATAGAAAATGCGTTTATTTTGTTTATTTTGTGGAGCTTTTGAAGTGTCACACTTCCCTATCACTGTGTATCTTGGATAAATTCCTACTCATATCTCAAGGTATAATATGGGATAAAATCCTTCTCGTATCTCAATCCTAAGCCTTTTCTCTTCTAATATTTGGGATGATGTTTTGCGTTATTTGTATCATTTAGGTCAGTTATTGCTTTACCAGTAACTTAATGTTGAGATGCCAGTCAACATGGCTTGAAATAAGATCATCTATGGATGAAGAAAAGGAGATTTGTTAACTTCCTCTCTGAACACATATTTCTTTCTTTTTTCTTTGAATTGATATGTTATTCTTTTGAAGCCATCTTTGACCATTTTCATACAGTTGAATATTGTCAATTTGCTACCATTGAATTTCCCCTTTTTCTTATTTGGTGCTAAAATGTTAGTCTTCTGTGTGACTGTTTCGCATGGAACATTCCCATCCAGGTGCTACTTAGTGACATAACTGCCTCTATGGTTATACATATTTTGAGCAGACTCGATTGGAACAAATCATGGAACTCCTTAAGTCTGGAACCCTGGAGGTTCCAGAGACACAAGATTCAGCAATAGAAGCTGAGAATGTTGATGATTCCCCGGGATCCCAAGCAACTAATGAGGTAAATTCAGAGCTCGTATTACTTTCAGGGACAGTTTTTTCTCTGGATGATTTTGATATATGCCTTAATCATAATATACAGGTGCGAAACAACGAACTTTTGGAGATTGAGAAACGTGAAGTTATTGGTATGCTTAGTTAGTGACTTGTTTCTATTATGCCCTCAATTTGAGTTTTGAATGCTATCTATTGAATTTTTTTTATCATTATTATACAGGTGAAATACTAAAACTGAATCCAAGTTATAAGGCCCCTCCTGATTATAGGCCCTTGTTGAAAGCAGACAAGTTACTTCTCCCAGTAAGATTGGTCTCGGATTACCTTTCTTCCGTGCTTGGTGATGCCATAGAAACGAGAAACATATTAACCTCTTATTTTATTTACTCTTTCCCTTACTGATAGCTATATGTTTTAAGTCTCATTCTTTTTATAACCATGGTTGGAAGGGTATCTAATATAGCACTGTTATTCTTATTTTCACAAGTCAATCATGATCTTTTAATACCCCTATTACATGAGGATCACGATCATTCACTTGATTTATAAATAAAATTATGTTAGGAGATTGTTTATTTTCCTTCACTTAATGGAATATGTATATTGTGTATTTAGTGATGTTATTTGATGTTAAAGTTGAACATTCTACCTTCTAAGGAGGCTCCCTAGGATTTGAGCCCATGAACTATTGATTATCATTAAGGACATTTTATAACGATGCTTAAGCTTAGCTTAGGTTTATTTCTAAGAACTTATAATTGAACAATCTGTTGCAAAAAAAAAAAAAAAAAAAAAATACTAAAGAATGCTAGTGCATGTGCCTCTAACAAGTAATAAAGTGATAAGAAAGAGTATTGATAAGGATTAATTGTTGCTACCAATTTATTGCTGCAACCTTCATTTGATTCTGATAGTCGACATAGACCTCATGAGACCTGCCCACCATTACAGCTGATATTTCCTTGTCTTGGGAAGAAAGACTTTGGTTTTAAGTGGTGTTCCTAAATTTGAAATTGCATCAAGATTGTTTAGTGCTTATCCTTATTAGTAGTAGACCAAGGGGCAGGATTCTAGCTTCTAGAGGGATCCGTTATCTTCCTTTTGGTGGTGGATTTCCTTAGGAGATTGATCTTGCAGGGGTAGGTAGGTGCAGTTGATGGTCTTTAGCTTGGTAGGAATAGTTTACACATATTCTACTTATAGTTTGCATGTGATACTATCTTTCTTGCTTGAGCAATGAGGATTTCTTTCTTTATCTCAATCGGATTTTGTCCTTTTTTGAGTCGATTTTTGAGCTGAAGATTAATAGAGGTCAATTTTCTGTTATTGGAGTTAATTGTGATCAAGATAGGCTGTCCAGGTGAGCTTCCTTTTTGGGTTATGAGATTGGTGTTCTCCTCTAGTCATTTTTGGTGCTTCCTCTATGGCATAACTCTGTGTTTGGAGTTTGATCTAACAACCTTATTGAATAACAAGACTTTTAGATCTCAATTATCCAAGAATCTAAAAAACGATTAGGAAACAATCCAAGGAAAAGTTTTGGAACAGATTACCTTGATGATCAAGATCAAGAGTAAAGAAAACTCGTGATTCGAATCACTCCACAAGGTAGCCTGATCAAGACTACTCGAATAACTCTAGTATGTAAATCTAAACACAAGAAATGTAAGGAAACAAGTTCATGTTTTGCTAATACACAGGAGAGTTTTGCTCAGTCATCCATTCAGTTCCCTACATTTATTAGTTATAAGTTATTATTTCCATAACCATGTGGAATTTACCTTGCAGGTTAAAGAATATCCTGATTACAACTTTATTGGCTTAATATACGGCCCCAGTGGGGAAAATCAAAAGCGATTAGAAAAGGTAAGAAAATCATTTTAGACTAGACTATGAAATGTTTTGCTAAAGATTATCTCCCTTTTCTTCAACATTTAACGTATATTTCGACTTATTAAACGTGTCAGGAAACTGGAGCCAAAATACAAATTTGTGGTATTAAACCTGGGACAGGTGAAAAGGTGATCCCTTTGACTCATGAAATTCATGATATGGTCTATACCAGTTATACACAGTCTGTCGTGTTATCTTGTTCTAATCTTTTATTCTTACTGCAAAATATATGAGCACCTCAGGGCTTTTTAGCTGTCAAGAATCTCTTCAGAAGTCTCTTTTACTTTTTATTTGTTCCAAAGCTCACTAGATCAACCTGTGGCTGTTTATTTTGTCTAGAAGTTAGAGTCTGTTCTGTGAGAATGGCTCTGAAGTTTGAAGGCACCTCAGGGTTCTTTTAATTTTGCCGAGGTTTAAAACTTGAGGGAGTTGTGAACTATAGTTTTTGTTAGATATTGTCTTCTTTGGGTTTTCCCTTCCGAGCTTCCCTTCAAAGTTTTAAAACACGTCCGCTAGGGAGAGGTTTCCACACCTTTATAAAGAATGCTTAGTTCCCCTCTTCAACCGATGTGGGATCCACAATCCATCTACTTTGGGGCCAGCGTCCTTGCTGGCACTCGTTTCCCTCTCCAATCAATATGAGATCTCACAGTTTTACTCTTTGTATCTCCCTGCCCCTCTTCTTGCAGGACGAAATTAAACCAACTGATGGACACGAAGCTCAGAGTGGTTATGAAGAGCTGTATGTTTGCATGTCAGCTGATACATTTGATAAGATCGACGCTGCAATTTCTGTTATAGAACTCCTAATCACCTCAATATTGGTTAGTCAATTTCTTTTAAGAAAATGAGATTATCTCCACGGTTCTCATCTACTTTGAGATAATTTATTTTCATTATTTATCACTCCTCGAATTCTTCCCACAGGGAAATTTGGCCACTGGTCCCACGTCGTCCGATTTGGTTTCTAGGGGGGAAAGTTCTTCCACCCGAGCCGAGGGTACGGTATCAAATGTTGGGCAGACTCCTATGCCAAACCAGGGGGTTATGCTACAAGGAGAGGTTTATGCGCCAACTTCAGCACAAGGGCAGTTTCATTATCCTAACACATGGTTGCCAAGGGGCCCTTCTCACACTTTAACCCCTGCTCCTGGATTTATTTCCCCACAAGATCCTCCATCAATTACGAACAACCCGATCCATTTGTCTCGCCCACCTACTCCAATTCCTTTCAACCCAGCTTTCCGGCCCCCCCCTGTTCATCCTCCCAGACACCAGTTTCCTGCACAAGACATGCAGCAACCTTTCATGACTCAGCCCAGTCACGTTGGTCAACCTGGGGTTCATCCTTTGACAATTCAACGGCCTTCATTGGTTCAATCTAGCGTCTCAAATCCAAACTTCACTGGCAGTGGTCCATTACCTTCAGGTCTACTCCTAAATATGCCAGGGTCATCAATTCCCTCTTCCTTGCCTCAACATGTTCCCAATAGCATTCCTTCAGGATCACTGCCTGATCGCCCTTTGGCACCTCCTAGCACAGTTTCTACTGGTTTTTCTGGACACCATCCACCGCAGGGTCCAAATAACATGGGACAGACGGCTCTATCATTTCCCCCACCCTTAGGACCTCGTGCAGCTCCACTGCAGGGTGTTAATTCTTCTAGCGCAGTACCTGCAAATACAGCAGTAGCCAATGTGGATGCATATGCATCTTTTCCTTCTGGACCATCCACCCCCCAGGCTCCAATTCCGTCACCCCATATAGGGCATCGCCCACCATTTTCAGTTCCTTCAGCACTATTACCCCCAACAGCACATAACCCAGCTGGTAACTTCATTGCTGGATCTGCTTTAACCCGTCCAACACCACCTACAAATACAAGTAACTTTACATTTCAACCACTGGGTCCACCAAACCCGTCTGCTCAACCAATGCTCAATTTGAACATTCAAAACTCACCAACCGTACCTTCATTGCAGCAGCCTGCATCTGGGGCGCCATCTTTCCATCCGGCTGCCCCAAATTTTTCCAGAGTTGGGAATCAACCATTTCCCGGACCCCAAGCTGGTAGCCAGATTGGTAATCATCGAATCCAAGAGGTCTCAACTAGGCTTCCTGCTTTCCTTGACCCAGGTCCTCGGACACAACTGCATCAGAGAAACTTTAGACCAAGTATGCAAATGCAAATGCCGAATTTGCAGGGCAATTTTCCTCACAGACCAGGGAACCATATGCAACTTGAACAAGGTTTCCTCATGCAAGCTACTCGACCTGATGTCCGGTTTGCTCCTCCACACTACAGTGGCAATCTGACATTTGTTTCTGGCCAGCCGCCTCCAAGTTCCGGAGGGCAGCAAGTTTATGATCCGTTCTCTCCTACATCTGTGTCTGGCACACAACAACAGGGGAGCAATCTTCCTAGATGAGAACTGTCAAACCGCATCAGGTGTTTGTAGTACTTAGTTAGTCCAAGTGCTGCATGGACTTCCGGGATCACCCATTAAGGCCCCAAAATGGCCACTCTAAAGAATGTAGGTGAGTGTGATGAGCATCTACTAAGCTCATAGATCAAAGCTTGACTGTATTTATGTTCCGCTCAAAAATATGAAAAATTACTTAGAATGGATATGTGATTCAATACTTTGCTGGTGAACTGAGCAAGCTCAACTAGTGACCTCTATTTTCTGACATATAAGCTTCTGATTCCCCC

mRNA sequence

AAGCAATTTCCCGGAGCACTTTGTGTGCTCTCGTAAGTGCGTCAATTCTTCATTGTGGATTCAGTTTTGAAGAACGCAGCGGTTCAGGTGATTGGAGAACAATATGAGTGCAGAGGTTGAAAAGACGTCGCATATTGAACCGGGAAATGCAAAGATGTCTGGAGCAACTAATTCATCTGCTGCACCAATGGGAAGCCAAAAGGTTTCCATGTTTGCAGCGAAGACTGGGTTTGTTATACCAAAAAACAAGCTTTCAGGATCTTTGGTTCCCGTCTTTCGAGTGAACAAGAAGTTGGGAGGGAATGAATCAGCTAATGGAGAAAATGAGAAACAGTCTCAAAGAAAAACAAAGTGGGGTCCTGATCTAACACAGGATTCTGCAGTTAGAAGGGGGAGGCTCATAGCTTATCAGGCACAACTCAAAGTCAATAGAAAATGCGTTTATTTTGTTTATTTTGTGGAGCTTTTGAAGTGTCACACTTCCCTATCACTGTGTATCTTGGATAAATTCCTACTCATATCTCAAGGTATAATATGGGATAAAATCCTTCTCCCATCTTTGACCATTTTCATACAGTTGAATATTGTCAATTTGCTACCATTGAATTTCCCCTTTTTCTTATTTGGTGCTAAAATTCTTCTGTGTGACTGTTTCGCATGGAACATTCCCATCCAGGTGCTACTTAGTGACATAACTGCCTCTATGACTCGATTGGAACAAATCATGGAACTCCTTAAGTCTGGAACCCTGGAGGTTCCAGAGACACAAGATTCAGCAATAGAAGCTGAGAATGTTGATGATTCCCCGGGATCCCAAGCAACTAATGAGGTGCGAAACAACGAACTTTTGGAGATTGAGAAACGTGAAGTTATTGGTGAAATACTAAAACTGAATCCAAGTTATAAGGCCCCTCCTGATTATAGGCCCTTGTTGAAAGCAGACAAGTTACTTCTCCCAGTTAAAGAATATCCTGATTACAACTTTATTGGCTTAATATACGGCCCCAGTGGGGAAAATCAAAAGCGATTAGAAAAGGAAACTGGAGCCAAAATACAAATTTGTGGTATTAAACCTGGGACAGGTGAAAAGGTGATCCCTTTGACTCATGAAATTCATGATATGGTCTATACCAGTTATACACAGTCTGTCGTGTTATCTTGTTCTAATCTTTTATTCTTACTGCAAAATATATGAGCACCTCAGGGCTTTTTAGCTGTCAAGAATCTCTTCAGAAGTCTCTTTTACTTTTTATTTGTTCCAAAGCTCACTAGATCAACCTGTGGCTGTTTATTTTGTCTAGAAGTTAGAGTCTGTTCTGTGAGAATGGCTCTGAAGTTTGAAGGCACCTCAGGGTTCTTTTAATTTTGCCGAGGTTTAAAACTTGAGGGAGTTGTGAACTATAGTTTTTGTTAGATATTGTCTTCTTTGGGTTTTCCCTTCCGAGCTTCCCTTCAAAGTTTTAAAACACGTCCGCTAGGGAGAGGTTTCCACACCTTTATAAAGAATGCTTAGTTCCCCTCTTCAACCGATGTGGGATCCACAATCCATCTACTTTGGGGCCAGCGTCCTTGCTGGCACTCGTTTCCCTCTCCAATCAATATGAGATCTCACAGTTTTACTCTTTGTATCTCCCTGCCCCTCTTCTTGCAGGACGAAATTAAACCAACTGATGGACACGAAGCTCAGAGTGGTTATGAAGAGCTGTATGTTTGCATGTCAGCTGATACATTTGATAAGATCGACGCTGCAATTTCTGTTATAGAACTCCTAATCACCTCAATATTGGGAAATTTGGCCACTGGTCCCACGTCGTCCGATTTGGTTTCTAGGGGGGAAAGTTCTTCCACCCGAGCCGAGGGTACGGTATCAAATGTTGGGCAGACTCCTATGCCAAACCAGGGGGTTATGCTACAAGGAGAGGTTTATGCGCCAACTTCAGCACAAGGGCAGTTTCATTATCCTAACACATGGTTGCCAAGGGGCCCTTCTCACACTTTAACCCCTGCTCCTGGATTTATTTCCCCACAAGATCCTCCATCAATTACGAACAACCCGATCCATTTGTCTCGCCCACCTACTCCAATTCCTTTCAACCCAGCTTTCCGGCCCCCCCCTGTTCATCCTCCCAGACACCAGTTTCCTGCACAAGACATGCAGCAACCTTTCATGACTCAGCCCAGTCACGTTGGTCAACCTGGGGTTCATCCTTTGACAATTCAACGGCCTTCATTGGTTCAATCTAGCGTCTCAAATCCAAACTTCACTGGCAGTGGTCCATTACCTTCAGGTCTACTCCTAAATATGCCAGGGTCATCAATTCCCTCTTCCTTGCCTCAACATGTTCCCAATAGCATTCCTTCAGGATCACTGCCTGATCGCCCTTTGGCACCTCCTAGCACAGTTTCTACTGGTTTTTCTGGACACCATCCACCGCAGGGTCCAAATAACATGGGACAGACGGCTCTATCATTTCCCCCACCCTTAGGACCTCGTGCAGCTCCACTGCAGGGTGTTAATTCTTCTAGCGCAGTACCTGCAAATACAGCAGTAGCCAATGTGGATGCATATGCATCTTTTCCTTCTGGACCATCCACCCCCCAGGCTCCAATTCCGTCACCCCATATAGGGCATCGCCCACCATTTTCAGTTCCTTCAGCACTATTACCCCCAACAGCACATAACCCAGCTGGTAACTTCATTGCTGGATCTGCTTTAACCCGTCCAACACCACCTACAAATACAAGTAACTTTACATTTCAACCACTGGGTCCACCAAACCCGTCTGCTCAACCAATGCTCAATTTGAACATTCAAAACTCACCAACCGTACCTTCATTGCAGCAGCCTGCATCTGGGGCGCCATCTTTCCATCCGGCTGCCCCAAATTTTTCCAGAGTTGGGAATCAACCATTTCCCGGACCCCAAGCTGGTAGCCAGATTGGTAATCATCGAATCCAAGAGGTCTCAACTAGGCTTCCTGCTTTCCTTGACCCAGGTCCTCGGACACAACTGCATCAGAGAAACTTTAGACCAAGTATGCAAATGCAAATGCCGAATTTGCAGGGCAATTTTCCTCACAGACCAGGGAACCATATGCAACTTGAACAAGGTTTCCTCATGCAAGCTACTCGACCTGATGTCCGGTTTGCTCCTCCACACTACAGTGGCAATCTGACATTTGTTTCTGGCCAGCCGCCTCCAAGTTCCGGAGGGCAGCAAGTTTATGATCCGTTCTCTCCTACATCTGTGTCTGGCACACAACAACAGGGGAGCAATCTTCCTAGATGAGAACTGTCAAACCGCATCAGGTGTTTGTAGTACTTAGTTAGTCCAAGTGCTGCATGGACTTCCGGGATCACCCATTAAGGCCCCAAAATGGCCACTCTAAAGAATGTAGGTGAGTGTGATGAGCATCTACTAAGCTCATAGATCAAAGCTTGACTGTATTTATGTTCCGCTCAAAAATATGAAAAATTACTTAGAATGGATATGTGATTCAATACTTTGCTGGTGAACTGAGCAAGCTCAACTAGTGACCTCTATTTTCTGACATATAAGCTTCTGATTCCCCC

Coding sequence (CDS)

ATGAGTGCAGAGGTTGAAAAGACGTCGCATATTGAACCGGGAAATGCAAAGATGTCTGGAGCAACTAATTCATCTGCTGCACCAATGGGAAGCCAAAAGGTTTCCATGTTTGCAGCGAAGACTGGGTTTGTTATACCAAAAAACAAGCTTTCAGGATCTTTGGTTCCCGTCTTTCGAGTGAACAAGAAGTTGGGAGGGAATGAATCAGCTAATGGAGAAAATGAGAAACAGTCTCAAAGAAAAACAAAGTGGGGTCCTGATCTAACACAGGATTCTGCAGTTAGAAGGGGGAGGCTCATAGCTTATCAGGCACAACTCAAAGTCAATAGAAAATGCGTTTATTTTGTTTATTTTGTGGAGCTTTTGAAGTGTCACACTTCCCTATCACTGTGTATCTTGGATAAATTCCTACTCATATCTCAAGGTATAATATGGGATAAAATCCTTCTCCCATCTTTGACCATTTTCATACAGTTGAATATTGTCAATTTGCTACCATTGAATTTCCCCTTTTTCTTATTTGGTGCTAAAATTCTTCTGTGTGACTGTTTCGCATGGAACATTCCCATCCAGGTGCTACTTAGTGACATAACTGCCTCTATGACTCGATTGGAACAAATCATGGAACTCCTTAAGTCTGGAACCCTGGAGGTTCCAGAGACACAAGATTCAGCAATAGAAGCTGAGAATGTTGATGATTCCCCGGGATCCCAAGCAACTAATGAGGTGCGAAACAACGAACTTTTGGAGATTGAGAAACGTGAAGTTATTGGTGAAATACTAAAACTGAATCCAAGTTATAAGGCCCCTCCTGATTATAGGCCCTTGTTGAAAGCAGACAAGTTACTTCTCCCAGTTAAAGAATATCCTGATTACAACTTTATTGGCTTAATATACGGCCCCAGTGGGGAAAATCAAAAGCGATTAGAAAAGGAAACTGGAGCCAAAATACAAATTTGTGGTATTAAACCTGGGACAGGTGAAAAGGTGATCCCTTTGACTCATGAAATTCATGATATGGTCTATACCAGTTATACACAGTCTGTCGTGTTATCTTGTTCTAATCTTTTATTCTTACTGCAAAATATATGA

Protein sequence

MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVELLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILLCDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQATNEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEKVIPLTHEIHDMVYTSYTQSVVLSCSNLLFLLQNI

Homology

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BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q9LU44 (Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-20
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 196 DITASMTRLEQIMELLKSGTL--EVPETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIE 255
           +I A  +RL +I  +L+SG    + PE Q S    E V D+ G +  T E R  E L  E
Sbjct: 157 EIQALNSRLLEISRMLQSGMPLDDRPEGQRSP-SPEPVYDNMGIRINTREYRARERLNRE 216

Query: 256 KREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKE 315
           ++E+I +I+K NP++K P DYRP     KL +P+KE+P YNFIGLI GP G  QKR+E+E
Sbjct: 217 RQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERE 276

Query: 316 TGAKIQICG 322
           TGAKI I G
Sbjct: 277 TGAKIVIRG 284

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BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q54BM5 (Branchpoint-bridging protein OS=Dictyostelium discoideum OX=44689 GN=sf1 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-16
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 0


Query: 203 RLEQIMELLKSGTLEVPE--TQDSAIEAENVDDSPGSQATNEVRNNELLEIEKREVIGEI 262
           R+++I + +  G +E  E   + S       D++     T E R  E L+ E+ +++   
Sbjct: 100 RVDEITKKITIGPIEFTERDRERSPSPPPTYDNNGKRSNTREQRIKEKLQKERHQLVVTA 159

Query: 263 LKLNPSYKAPPDYRP--LLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQ 322
            ++NP+YK P DY+P    K  K+ +P+K +P+YNFIGLI GP G  QKR+EKE+GAKI 
Sbjct: 160 QQINPTYKPPSDYQPPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIA 219

Query: 323 ICGIKPGTGEKVIPLTHEIHDMVYTSYTQSVV 351
           I G       K   L  + +D ++   T   V
Sbjct: 220 IRGKGSSRDGKPTKLQFQENDELHVLLTADTV 251

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BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q4P0H7 (Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=BBP PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.9e-16
Identity = 59/188 (31.38%), Postives = 93/188 (49.47%), Query Frame = 0


Query: 177 KILLCDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPG 236
           KI +      N+  Q L  D  A   RL++I   L+SG    P+ + S       D+   
Sbjct: 145 KITIPTAIGANVSAQEL--DKYAIQVRLDEISRKLRSGDFVPPDRERSPSPPPTYDNQGR 204

Query: 237 SQATNEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLK----ADKLLLPVKEYPDY 296
              T EVR  + LE E+  ++   LKL+P+++ P DY  + +     +K+ LP+KE+P+ 
Sbjct: 205 RTNTREVRYRKKLEDERVALVDRQLKLDPNFRPPSDYHAIKRNQRPTEKVYLPIKEFPEI 264

Query: 297 NFIGLIYGPSGENQKRLEKETGAKIQICG---IKPGTGEKVIPLTHEIHDMVYTSYTQSV 356
            F GL+ GP G   K +E+++GAKI I G   +K G G+       E    V T+  ++ 
Sbjct: 265 KFFGLLVGPRGNTLKTMERQSGAKISIRGKGSVKTGKGKMDADEDEEEMHCVVTADDEAS 324

Query: 357 VLSCSNLL 358
           V  C  L+
Sbjct: 325 VKKCIKLI 330

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BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q15637 (Splicing factor 1 OS=Homo sapiens OX=9606 GN=SF1 PE=1 SV=4)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-15
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 203 RLEQIMELLKSGTLEV-PETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIEKREVIGEI 262
           ++E +   L++G L + P  +D +   E + +S G +  T E R  + LE E+  +I E+
Sbjct: 57  QIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEM 116

Query: 263 LKLNPSYKAPPDYRP--LLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQ 322
           + LNP +K P DY+P     +DK+++P  EYP+ NF+GL+ GP G   K +EKE  AKI 
Sbjct: 117 VALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIM 176

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BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q64213 (Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6)

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-15
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 203 RLEQIMELLKSGTLEV-PETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIEKREVIGEI 262
           ++E +   L++G L + P  +D +   E + +S G +  T E R  + LE E+  +I E+
Sbjct: 57  QIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEM 116

Query: 263 LKLNPSYKAPPDYRP--LLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQ 322
           + LNP +K P DY+P     +DK+++P  EYP+ NF+GL+ GP G   K +EKE  AKI 
Sbjct: 117 VALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIM 176

[Close]

BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1H260 (branchpoint-bridging protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459759 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 1.3e-109
Identity = 231/329 (70.21%), Postives = 231/329 (70.21%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGIKPGTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 231

[Close]

BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1K0A6 (splicing factor 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491294 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 7.8e-107
Identity = 227/329 (69.00%), Postives = 229/329 (69.60%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANG+NEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGDNEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDS GSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSLGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGI+ GTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIRAGTGEK 231

[Close]

BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1H2E4 (branchpoint-bridging protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459759 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 3.3e-105
Identity = 231/356 (64.89%), Postives = 231/356 (64.89%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240

Query: 241 NE---------------------------VRNNELLEIEKREVIGEILKLNPSYKAPPDY 300
           NE                           VRNNELLEIEKREVIGEILKLNPSYKAPPDY
Sbjct: 241 NEVNSELVLLSGTVFSLDDFDICLNHNIQVRNNELLEIEKREVIGEILKLNPSYKAPPDY 258

Query: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 330
           RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK
Sbjct: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 258

[Close]

BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1K377 (branchpoint-bridging protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491294 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 2.0e-102
Identity = 227/356 (63.76%), Postives = 229/356 (64.33%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANG+NEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGDNEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDS GSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSLGSQAT 240

Query: 241 NE---------------------------VRNNELLEIEKREVIGEILKLNPSYKAPPDY 300
           NE                           VRNNELLEIEKREVIGEILKLNPSYKAPPDY
Sbjct: 241 NEVNSELVLLSGTVFSLYDFDVCLNHNIQVRNNELLEIEKREVIGEILKLNPSYKAPPDY 258

Query: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 330
           RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGI+ GTGEK
Sbjct: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIRAGTGEK 258

[Close]

BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1DII6 (branchpoint-bridging protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021231 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 4.1e-92
Identity = 201/330 (60.91%), Postives = 216/330 (65.45%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGN KMSGAT SS APMGSQKVSMFAAKTGFVIPKNKLSGSLVP+FRV
Sbjct: 1   MSAEVEKTSHIEPGNMKMSGATISSPAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKK GGNES NGEN+KQ+QRKTKWGPDLTQD+AVR+GRLIAYQ                 
Sbjct: 61  NKKSGGNESVNGENDKQAQRKTKWGPDLTQDTAVRKGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDD-SPGSQA 240
                                TRLEQI ELLKSGTLEVPETQDSA+ AENV+D SPGSQA
Sbjct: 181 ---------------------TRLEQITELLKSGTLEVPETQDSALGAENVEDKSPGSQA 232

Query: 241 TNEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIY 300
           +++V+N ELLE+EKREVIGEILKLNPSYKAPPDYRPLLK D+  LPVKEYP YNFIGLIY
Sbjct: 241 SDKVQNTELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRFPLPVKEYPGYNFIGLIY 232

Query: 301 GPSGENQKRLEKETGAKIQICGIKPGTGEK 330
           GPSGENQKRLEKETG K++ICGIK  TGEK
Sbjct: 301 GPSGENQKRLEKETGVKMRICGIKAETGEK 232

[Close]

BLAST of CmoCh02G012430 vs. NCBI nr
Match: XP_022958562.1 (branchpoint-bridging protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 406.4 bits (1043), Expect = 2.6e-109
Identity = 231/329 (70.21%), Postives = 231/329 (70.21%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGIKPGTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 231

[Close]

BLAST of CmoCh02G012430 vs. NCBI nr
Match: XP_023534206.1 (branchpoint-bridging protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 403.3 bits (1035), Expect = 2.2e-108
Identity = 230/329 (69.91%), Postives = 230/329 (69.91%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGIK GTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIKAGTGEK 231

[Close]

BLAST of CmoCh02G012430 vs. NCBI nr
Match: XP_022995912.1 (splicing factor 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 397.1 bits (1019), Expect = 1.6e-106
Identity = 227/329 (69.00%), Postives = 229/329 (69.60%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANG+NEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGDNEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDS GSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSLGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGI+ GTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIRAGTGEK 231

[Close]

BLAST of CmoCh02G012430 vs. NCBI nr
Match: XP_022958561.1 (branchpoint-bridging protein-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 391.7 bits (1005), Expect = 6.7e-105
Identity = 231/356 (64.89%), Postives = 231/356 (64.89%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240

Query: 241 NE---------------------------VRNNELLEIEKREVIGEILKLNPSYKAPPDY 300
           NE                           VRNNELLEIEKREVIGEILKLNPSYKAPPDY
Sbjct: 241 NEVNSELVLLSGTVFSLDDFDICLNHNIQVRNNELLEIEKREVIGEILKLNPSYKAPPDY 258

Query: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 330
           RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK
Sbjct: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 258

[Close]

BLAST of CmoCh02G012430 vs. NCBI nr
Match: KAG7035824.1 (bpb1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.4 bits (999), Expect = 3.3e-104
Identity = 228/346 (65.90%), Postives = 229/346 (66.18%), Query Frame = 0


Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKM+GATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMTGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGEN KQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENRKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLP--------------- 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLP               
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPEIDLAGVGRVQLMVF 248

Query: 301 --VKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 330
             VKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIK GTGEK
Sbjct: 301 SLVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKAGTGEK 248

[Close]

BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT3G32940.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 154.1 bits (388), Expect = 2.2e-37
Identity = 117/311 (37.62%), Postives = 144/311 (46.30%), Query Frame = 0


Query: 22  TNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVF-RVNKKLGGNESANGENEK-QSQ 81
           T++SAA     K+SMF AK+GFVIPKNKLSGSL+P+F R NK LG  +S  G   K   +
Sbjct: 2   TSTSAA-----KISMFGAKSGFVIPKNKLSGSLIPIFQRGNKTLGSADSDTGPPSKLGKK 61

Query: 82  RKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVELLKCHTSLSLCILDKFLLI 141
           RKTKW PDL+QD AV++ R +AYQ                                    
Sbjct: 62  RKTKWAPDLSQDIAVKKCRFLAYQ------------------------------------ 121

Query: 142 SQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILLCDCFAWNIPIQVLLSDITA 201
                                                                       
Sbjct: 122 ------------------------------------------------------------ 181

Query: 202 SMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQATNEVRNNELLEIEKREVIGE 261
              R++QI + L+SGTLEV ET                       N   LE EKRE IGE
Sbjct: 182 --KRVDQITQRLESGTLEV-ET-----------------------NRTDLEFEKREAIGE 184

Query: 262 ILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQI 321
           IL+LNP YKAPPDY+PLLK  +L + VKE+ D++F+ LI+G  G+ QKRLEKETGAK+QI
Sbjct: 242 ILELNPRYKAPPDYKPLLKEARLPIDVKEHSDFSFLSLIFGSQGDTQKRLEKETGAKVQI 184

Query: 322 CGIKPGTGEKV 331
            G K G GEKV
Sbjct: 302 FGTKTG-GEKV 184

[Close]

BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT5G51300.1 (splicing factor-related )

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-22
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 196 DITASMTRLEQIMELLKSGTL--EVPETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIE 255
           +I A  +RL +I  +L+SG    + PE Q S    E V D+ G +  T E R  E L  E
Sbjct: 157 EIQALNSRLLEISRMLQSGMPLDDRPEGQRSP-SPEPVYDNMGIRINTREYRARERLNRE 216

Query: 256 KREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKE 315
           ++E+I +I+K NP++K P DYRP     KL +P+KE+P YNFIGLI GP G  QKR+E+E
Sbjct: 217 RQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERE 276

Query: 316 TGAKIQICG 322
           TGAKI I G
Sbjct: 277 TGAKIVIRG 284

[Close]

BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT5G51300.2 (splicing factor-related )

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-22
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 196 DITASMTRLEQIMELLKSGTL--EVPETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIE 255
           +I A  +RL +I  +L+SG    + PE Q S    E V D+ G +  T E R  E L  E
Sbjct: 157 EIQALNSRLLEISRMLQSGMPLDDRPEGQRSP-SPEPVYDNMGIRINTREYRARERLNRE 216

Query: 256 KREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKE 315
           ++E+I +I+K NP++K P DYRP     KL +P+KE+P YNFIGLI GP G  QKR+E+E
Sbjct: 217 RQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERE 276

Query: 316 TGAKIQICG 322
           TGAKI I G
Sbjct: 277 TGAKIVIRG 284

[Close]

BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT5G51300.3 (splicing factor-related )

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-22
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 196 DITASMTRLEQIMELLKSGTL--EVPETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIE 255
           +I A  +RL +I  +L+SG    + PE Q S    E V D+ G +  T E R  E L  E
Sbjct: 157 EIQALNSRLLEISRMLQSGMPLDDRPEGQRSP-SPEPVYDNMGIRINTREYRARERLNRE 216

Query: 256 KREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKE 315
           ++E+I +I+K NP++K P DYRP     KL +P+KE+P YNFIGLI GP G  QKR+E+E
Sbjct: 217 RQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERE 276

Query: 316 TGAKIQICG 322
           TGAKI I G
Sbjct: 277 TGAKIVIRG 284

[Close]

BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT3G08620.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-06
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 269 APPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICG 322
           A P   P+ +  +L LPV  YP++NF+G + GP G + KR+E  TG ++ I G
Sbjct: 126 ASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 178

The following BLAST results are available for this feature:

BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU44	1.4e-20	48.06	Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1	[more]
Q54BM5	2.1e-16	34.87	Branchpoint-bridging protein OS=Dictyostelium discoideum OX=44689 GN=sf1 PE=3 SV...	[more]
Q4P0H7	7.9e-16	31.38	Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC 9021) OX=2376...	[more]
Q15637	1.4e-15	38.21	Splicing factor 1 OS=Homo sapiens OX=9606 GN=SF1 PE=1 SV=4	[more]
Q64213	1.8e-15	38.21	Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6	[more]

BLAST of CmoCh02G012430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H260	1.3e-109	70.21	branchpoint-bridging protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1K0A6	7.8e-107	69.00	splicing factor 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491294 PE...	[more]
A0A6J1H2E4	3.3e-105	64.89	branchpoint-bridging protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1K377	2.0e-102	63.76	branchpoint-bridging protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1DII6	4.1e-92	60.91	branchpoint-bridging protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of CmoCh02G012430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958562.1	2.6e-109	70.21	branchpoint-bridging protein-like isoform X2 [Cucurbita moschata]	[more]
XP_023534206.1	2.2e-108	69.91	branchpoint-bridging protein-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022995912.1	1.6e-106	69.00	splicing factor 1-like isoform X2 [Cucurbita maxima]	[more]
XP_022958561.1	6.7e-105	64.89	branchpoint-bridging protein-like isoform X1 [Cucurbita moschata]	[more]
KAG7035824.1	3.3e-104	65.90	bpb1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmoCh02G012430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G32940.1	2.2e-37	37.62	RNA-binding KH domain-containing protein	[more]
AT5G51300.1	9.9e-22	48.06	splicing factor-related	[more]
AT5G51300.2	9.9e-22	48.06	splicing factor-related	[more]
AT5G51300.3	9.9e-22	48.06	splicing factor-related	[more]
AT3G08620.1	2.6e-06	41.51	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 273..338 e-value: 5.4E-17 score: 64.1
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 280..326
IPR032570	Splicing factor 1, helix-hairpin domain	PFAM	PF16275	SF1-HH	coord: 198..274 e-value: 3.1E-9 score: 37.2
None	No IPR available	GENE3D	6.10.140.1790		coord: 195..270 e-value: 8.2E-7 score: 30.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11208:SF98	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN	coord: 26..330
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 293..319 score: 8.554656
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 293..324 e-value: 2.0E-5 score: 24.3
IPR045071	KH domain-containing BBP-like	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 26..330

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G012430.1	CmoCh02G012430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding