CmoCh02G012330 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G012330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 7421742 .. 7422228 (+)
RNA-Seq ExpressionCmoCh02G012330
SyntenyCmoCh02G012330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGGGATCGTCTCTCCCTTTTTCTCTCGGTGGTTCGAATATGATTATATTTTATTCCCTTTTCAGGTAATTTAAAAATGCATTTCTGAAGCTGAAGAACATTACACATGGCGTTGATTTCGATGCGGAATGTTCTACAAAAACATACCCCAGGTCATAATCCAACAGATTATGGTGAATACCCAATGTTTGTCGTAGCGCACCGTCCTCCGACTGGTCGGCAGTTTCCCTCTTCCTATACTGGATTTGAAGGTACTGGTTGATACTTCATTGCCGATTTTCTTAATATTCATACATTATTGTCATTTTCAGTAGATTTTTTACTCGAGCTGGGAATGGCGGGGATTGGAGGTGTTATTGTGAACTGCTGCGATTTCTGTTCCTGTTGCATCGAGGTTCATGATGCTTGTTGTAATAGTAGTTTGCTGCCTTTCCCATGCCATGGAGCGGCAGATATTGGGGGTTCTCTGTTTATTTGTGGGGATTAA

mRNA sequence

ACGGGATCGTCTCTCCCTTTTTCTCTCGGTGGTTCGAATATGATTATATTTTATTCCCTTTTCAGGTAATTTAAAAATGCATTTCTGAAGCTGAAGAACATTACACATGGCGTTGATTTCGATGCGGAATGTTCTACAAAAACATACCCCAGGTCATAATCCAACAGATTATGGTGAATACCCAATGTTTGTCGTAGCGCACCGTCCTCCGACTGGTCGGCAGTTTCCCTCTTCCTATACTGGATTTGAAGATTTTTTACTCGAGCTGGGAATGGCGGGGATTGGAGGTGTTATTGTGAACTGCTGCGATTTCTGTTCCTGTTGCATCGAGGTTCATGATGCTTGTTGTAATAGTAGTTTGCTGCCTTTCCCATGCCATGGAGCGGCAGATATTGGGGGTTCTCTGTTTATTTGTGGGGATTAA

Coding sequence (CDS)

ATGGCGTTGATTTCGATGCGGAATGTTCTACAAAAACATACCCCAGGTCATAATCCAACAGATTATGGTGAATACCCAATGTTTGTCGTAGCGCACCGTCCTCCGACTGGTCGGCAGTTTCCCTCTTCCTATACTGGATTTGAAGATTTTTTACTCGAGCTGGGAATGGCGGGGATTGGAGGTGTTATTGTGAACTGCTGCGATTTCTGTTCCTGTTGCATCGAGGTTCATGATGCTTGTTGTAATAGTAGTTTGCTGCCTTTCCCATGCCATGGAGCGGCAGATATTGGGGGTTCTCTGTTTATTTGTGGGGATTAA

Protein sequence

MALISMRNVLQKHTPGHNPTDYGEYPMFVVAHRPPTGRQFPSSYTGFEDFLLELGMAGIGGVIVNCCDFCSCCIEVHDACCNSSLLPFPCHGAADIGGSLFICGD
Homology
[Close]
BLAST of CmoCh02G012330 vs. NCBI nr
Match: KAG6605864.1 (hypothetical protein SDJN03_03181, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.3 bits (560), Expect = 7.8e-54
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MALISMRNVLQKHTPGHNPTDYGEYPMFVVAHRPPTGRQFPSSYTGFE-DFLLELGMAGI 60
           MALISMRNVLQKHTPG+NPTDYGEYPMFVVAHRPPTGRQFPSSYTGFE DFLLELGMAGI
Sbjct: 1   MALISMRNVLQKHTPGYNPTDYGEYPMFVVAHRPPTGRQFPSSYTGFEVDFLLELGMAGI 60

Query: 61  GGVIVNCCDFCSCCIEVHDACCNSSLLPFPCHGAADIGGSLFICGD 106
           GGVIVNCCDFCSCCIEV DACC SSLLPFPCHGAADIGGSLFICGD
Sbjct: 61  GGVIVNCCDFCSCCIEVRDACCYSSLLPFPCHGAADIGGSLFICGD 106

[Close]
BLAST of CmoCh02G012330 vs. NCBI nr
Match: KAG7035814.1 (hypothetical protein SDJN02_02613, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 63/81 (77.78%), Postives = 64/81 (79.01%), Query Frame = 0 

Query: 1  MALISMRNVLQKHTPGHNPTDYGEYPMFVVAHRPPTGRQFPSSYTGFEDFLLELGMAGIG 60
          MALISMRNVLQKHTPG+NPTDYGEYPMFVVAHRPPT            DFLLELGMAGIG
Sbjct: 1  MALISMRNVLQKHTPGYNPTDYGEYPMFVVAHRPPT-----------VDFLLELGMAGIG 60

Query: 61 GVIVNCCDFCSCCIEVHDACC 82
          GVIVNCCDFCSCCIE     C
Sbjct: 61 GVIVNCCDFCSCCIEAGKLNC 70

The following BLAST results are available for this feature:
BLAST of CmoCh02G012330 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G012330 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G012330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605864.17.8e-5496.23hypothetical protein SDJN03_03181, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035814.11.8e-2677.78hypothetical protein SDJN02_02613, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh02G012330 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G012330.1CmoCh02G012330.1mRNA