
CmoCh02G011390 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGCCACTTCCATTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAGCAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGTGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACCGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGCCACTTCCATTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAGCAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGTGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACCGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGCCACTTCCATTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAGCAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGTGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACCGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF Homology
BLAST of CmoCh02G011390 vs. ExPASy Swiss-Prot
Match: Q8BTE0 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf4 PE=3 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 5.4e-08 Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 0
BLAST of CmoCh02G011390 vs. ExPASy Swiss-Prot
Match: Q9VLU6 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Sirup PE=3 SV=2) HSP 1 Score: 55.5 bits (132), Expect = 4.5e-07 Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0
BLAST of CmoCh02G011390 vs. ExPASy Swiss-Prot
Match: Q5VUM1 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF4 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06 Identity = 45/113 (39.82%), Postives = 52/113 (46.02%), Query Frame = 0
BLAST of CmoCh02G011390 vs. ExPASy Swiss-Prot
Match: Q54Y25 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278459 PE=3 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04 Identity = 34/99 (34.34%), Postives = 48/99 (48.48%), Query Frame = 0
BLAST of CmoCh02G011390 vs. ExPASy TrEMBL
Match: A0A6J1H1T7 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111459345 PE=3 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of CmoCh02G011390 vs. ExPASy TrEMBL
Match: A0A6J1K722 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111491251 PE=3 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.6e-50 Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0
BLAST of CmoCh02G011390 vs. ExPASy TrEMBL
Match: A0A0A0KQ66 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G139490 PE=3 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 7.7e-34 Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 0
BLAST of CmoCh02G011390 vs. ExPASy TrEMBL
Match: A0A5A7TMD3 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00530 PE=3 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 6.5e-33 Identity = 81/111 (72.97%), Postives = 91/111 (81.98%), Query Frame = 0
BLAST of CmoCh02G011390 vs. ExPASy TrEMBL
Match: M5XLA3 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Prunus persica OX=3760 GN=PRUPE_ppa013634mg PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 8.0e-15 Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 0
BLAST of CmoCh02G011390 vs. NCBI nr
Match: XP_022957978.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]) HSP 1 Score: 211.1 bits (536), Expect = 4.9e-51 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of CmoCh02G011390 vs. NCBI nr
Match: XP_023532848.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of CmoCh02G011390 vs. NCBI nr
Match: KAG6605777.1 (Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035745.1 Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of CmoCh02G011390 vs. NCBI nr
Match: XP_022995844.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]) HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50 Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0
BLAST of CmoCh02G011390 vs. NCBI nr
Match: KGN49871.1 (hypothetical protein Csa_000062 [Cucumis sativus]) HSP 1 Score: 152.9 bits (385), Expect = 1.6e-33 Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 0
BLAST of CmoCh02G011390 vs. TAIR 10
Match: AT5G67490.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 58.2 bits (139), Expect = 5.0e-09 Identity = 42/99 (42.42%), Postives = 53/99 (53.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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