CmoCh02G010980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G010980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	UDP-N-acetylglucosamine1-carboxyvinyltransferase
Location	Cmo_Chr02: 6656984 .. 6657694 (-)
RNA-Seq Expression	CmoCh02G010980
Synteny	CmoCh02G010980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTAGTAACGCAAGTCATCAACTTAAGGTCTTCGATCGGCAGCCGATCTTCAGGGAAGGGACATCCGTCGCTACTCACCACCTCCTTAGCCAGCGGAGCACACGGCGGTGGTACCACATCGCTACTGTATCCTTCAACATTTGTACAGTTCCATTGCAATTTCTTCTGCTTCGCTGTTAGTCCAATTTTTATATTTGAAATACAAATATCGGTGAATGGATCTCCTGAAATCCCATCCAATCTTGCTGAGTAAGTCACATTTTCTGCCACCACATCTCTGTAATTAATGTTCTTAATTTCCGGCAGCGCCTTTGGATCGAACTTCTCGTCTGGATGGGACTTGTAGTCTCCGGTCATCCAGAAGACGTATTTCATCGTGGATAGAAACATTTGTCGGACGAAAATGTCCTTGACATACCCACCTCGTCCAATGGCAGTTTTAATTCTCACGGCGGATTGAGTGTTGATTGCAGTGACATTTTCGATTCTGACGTTACGGATTCCACCGGACATTTCACTGCCGAGGGCAATGCCGGCAGAATCTGGAGAGATGCAAGTGAGGCGGCGGATGAGGAGGTCCTCGGTTGGCATTCCGAATTGGATTCCATATTGGTCCCATCCACTCTTGACAGCAATGCAGTCGTCACCGGAGACAATGAAGCAGTCTTCAATTCGAGTATTGATGCAAGAATCTGTGAAAATTGA

mRNA sequence

ATGATTTTTAGTAACGCAAGTCATCAACTTAAGGTCTTCGATCGGCAGCCGATCTTCAGGGAAGGGACATCCGTCGCTACTCACCACCTCCTTAGCCAGCGGAGCACACGGCGGTGGTACCACATCGCTACTCGCCTTTGGATCGAACTTCTCGTCTGGATGGGACTTGTAGTCTCCGGTCATCCAGAAGACAAACATTTGTCGGACGAAAATGTCCTTGACATACCCACCTCGTCCAATGGCAGTTTTAATTCTCACGGCGGATTGAGTGTTGATTGCAGTGACATTTTCGATTCTGACGTTACGGATTCCACCGGACATTTCACTGCCGAGGGCAATGCCGGCAGAATCTGGAGAGATGCAAGTGAGGCGGCGGATGAGGAGGTCCTCGGTTGGCATTCCGAATTGGATTCCATATTGGTCCCATCCACTCTTGACAGCAATGCAGTCGTCACCGGAGACAATGAAGCAGTCTTCAATTCGAGTATTGATGCAAGAATCTGTGAAAATTGA

Coding sequence (CDS)

ATGATTTTTAGTAACGCAAGTCATCAACTTAAGGTCTTCGATCGGCAGCCGATCTTCAGGGAAGGGACATCCGTCGCTACTCACCACCTCCTTAGCCAGCGGAGCACACGGCGGTGGTACCACATCGCTACTCGCCTTTGGATCGAACTTCTCGTCTGGATGGGACTTGTAGTCTCCGGTCATCCAGAAGACAAACATTTGTCGGACGAAAATGTCCTTGACATACCCACCTCGTCCAATGGCAGTTTTAATTCTCACGGCGGATTGAGTGTTGATTGCAGTGACATTTTCGATTCTGACGTTACGGATTCCACCGGACATTTCACTGCCGAGGGCAATGCCGGCAGAATCTGGAGAGATGCAAGTGAGGCGGCGGATGAGGAGGTCCTCGGTTGGCATTCCGAATTGGATTCCATATTGGTCCCATCCACTCTTGACAGCAATGCAGTCGTCACCGGAGACAATGAAGCAGTCTTCAATTCGAGTATTGATGCAAGAATCTGTGAAAATTGA

Protein sequence

MIFSNASHQLKVFDRQPIFREGTSVATHHLLSQRSTRRWYHIATRLWIELLVWMGLVVSGHPEDKHLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDSDVTDSTGHFTAEGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVFNSSIDARICEN

Homology

[Close]

BLAST of CmoCh02G010980 vs. ExPASy TrEMBL
Match: A0A6A4LUY1 (Protein kinase domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_03262 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 46  LWIELLVWMGLVVSGHPED------KHLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDS 105
           L I  LV +G V + HPE+       H S ++V  +  +S G  ++  G   D  D+   
Sbjct: 346 LGIVPLVRVGPVTARHPENVLHGLKGHTSYKDVFHVGPASGGRLDADPGFRGDGGDVLGP 405

Query: 106 DVTDSTGHFTAEGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVF 161
           DV D+ GH  A+G+   +  DA EAAD+E+LG  S+ D++LVP  L   AVV GD E VF
Sbjct: 406 DVLDAAGHLAAQGDDSAVRGDAGEAADDELLGRQSDFDAVLVPPALYGYAVVAGDYETVF 465

[Close]

BLAST of CmoCh02G010980 vs. ExPASy TrEMBL
Match: A0A426YLG4 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00050385 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 48  IELLVWMGLVVSGHPEDK------HLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDSDV 107
           + L+V + LV   HPED       H  D +VL +  S++   +    L V   D+    V
Sbjct: 132 VVLVVGVRLVAPRHPEDPLHGVQIHPPDVDVLHVGASAHRRLDPDARLRVQRGDVLRPHV 191

Query: 108 TDSTGHFTAEGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVFNS 167
           +D TGH   + + G   R A E +D++VL  H   D++LVP  LD +AVV G   AV + 
Sbjct: 192 SDPTGHLAPQCDHGTGRRHAGEPSDDDVLARHPVGDAVLVPPALDRHAVVAGHYVAVLDP 251

Query: 168 SIDARICE 170
            I A +C+
Sbjct: 252 DIGAGVCQ 259

[Close]

BLAST of CmoCh02G010980 vs. ExPASy TrEMBL
Match: A0A5A7QP43 (UDP-N-acetylglucosamine1-carboxyvinyltransferase OS=Striga asiatica OX=4170 GN=STAS_23730 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 41  HIATRLWIELLVWMGLVVSGHPEDK------HLSDENVLDIPTSSNGSFNSHGGLSVDCS 100
           H   R+ +  +V +  V   HP++       H+ ++ +L + ++  G F +HG L V+  
Sbjct: 73  HYRKRVRVVFIVRVLTVRVSHPQNVLHRFQIHVPNKYLLHVASAPGGCFYTHGRLGVEGV 132

Query: 101 DIFDSDVTDSTGHFTAEGNAGRIWRDASEAADEEVLGWHSELDS 139
           D+  SDV DS  H  AEGN GR+ R A +  D E LGW  E DS
Sbjct: 133 DVVGSDVFDSARHLAAEGNGGRVGRIAGDPLDAEALGWPPEFDS 176

[Close]

BLAST of CmoCh02G010980 vs. ExPASy TrEMBL
Match: C0PCU3 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.3e-07
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 57  VVSGHPE------DKHLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDSDVTDSTGHFTA 116
           VV+GHPE      +   + E+V D         +  G L VD   +  + V D+ GH  A
Sbjct: 143 VVAGHPEHPLHGVEAEAAHEDVPDEAAPPGAGLDPDGRLRVDGHAVLGAHVADAAGHLAA 202

Query: 117 EGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVFNSSIDARICEN 171
           + + G    DA +  D++VL  H E D++LVP  L  +AVV GD+ AV +     RI  N
Sbjct: 203 QRDHGARGGDAGQPPDDDVLARHVEPDAVLVPPALHGHAVVAGDDVAVLDLDTRGRIRVN 262

[Close]

BLAST of CmoCh02G010980 vs. NCBI nr
Match: KAE9464826.1 (hypothetical protein C3L33_03262, partial [Rhododendron williamsianum])

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-11
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 46  LWIELLVWMGLVVSGHPED------KHLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDS 105
           L I  LV +G V + HPE+       H S ++V  +  +S G  ++  G   D  D+   
Sbjct: 346 LGIVPLVRVGPVTARHPENVLHGLKGHTSYKDVFHVGPASGGRLDADPGFRGDGGDVLGP 405

Query: 106 DVTDSTGHFTAEGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVF 161
           DV D+ GH  A+G+   +  DA EAAD+E+LG  S+ D++LVP  L   AVV GD E VF
Sbjct: 406 DVLDAAGHLAAQGDDSAVRGDAGEAADDELLGRQSDFDAVLVPPALYGYAVVAGDYETVF 465

[Close]

BLAST of CmoCh02G010980 vs. NCBI nr
Match: RZS18506.1 (hypothetical protein BHM03_00050794 [Ensete ventricosum])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 0


Query: 20  REGTSVATHHLLSQRSTRRWYHIATRLWIELLVWMGLVVSGHPEDK------HLSDENVL 79
           R    V +HHL    +     H    + + L+V + LV   HPED       H  D +VL
Sbjct: 108 RRHGDVVSHHL----AVADPLHHGDGIGVVLVVGVRLVAPRHPEDPLHGVQIHPPDVDVL 167

Query: 80  DIPTSSNGSFNSHGGLSVDCSDIFDSDVTDSTGHFTAEGNAGRIWRDASEAADEEVLGWH 139
            I TS++   +    L V   D+    V+D TGH   + + G   R A E +D++VL  H
Sbjct: 168 HIGTSAHRRLDPDARLRVQRGDVLHPHVSDPTGHLAPQCDHGTGRRHAGEPSDDDVLARH 227

Query: 140 SELDSILVPSTLDSNAVVTGDNEAVFNSSIDARICE 170
              D++LVP  LD +AVV G   AV +  I A +C+
Sbjct: 228 PVGDAVLVPPALDRHAVVAGHYVAVLDPDIGAGVCQ 259

[Close]

BLAST of CmoCh02G010980 vs. NCBI nr
Match: RRT52567.1 (hypothetical protein B296_00050385 [Ensete ventricosum])

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-08
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 48  IELLVWMGLVVSGHPEDK------HLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDSDV 107
           + L+V + LV   HPED       H  D +VL +  S++   +    L V   D+    V
Sbjct: 132 VVLVVGVRLVAPRHPEDPLHGVQIHPPDVDVLHVGASAHRRLDPDARLRVQRGDVLRPHV 191

Query: 108 TDSTGHFTAEGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVFNS 167
           +D TGH   + + G   R A E +D++VL  H   D++LVP  LD +AVV G   AV + 
Sbjct: 192 SDPTGHLAPQCDHGTGRRHAGEPSDDDVLARHPVGDAVLVPPALDRHAVVAGHYVAVLDP 251

Query: 168 SIDARICE 170
            I A +C+
Sbjct: 252 DIGAGVCQ 259

[Close]

BLAST of CmoCh02G010980 vs. NCBI nr
Match: GER46678.1 (UDP-N-acetylglucosamine1-carboxyvinyltransferase [Striga asiatica])

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-07
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 41  HIATRLWIELLVWMGLVVSGHPEDK------HLSDENVLDIPTSSNGSFNSHGGLSVDCS 100
           H   R+ +  +V +  V   HP++       H+ ++ +L + ++  G F +HG L V+  
Sbjct: 73  HYRKRVRVVFIVRVLTVRVSHPQNVLHRFQIHVPNKYLLHVASAPGGCFYTHGRLGVEGV 132

Query: 101 DIFDSDVTDSTGHFTAEGNAGRIWRDASEAADEEVLGWHSELDS 139
           D+  SDV DS  H  AEGN GR+ R A +  D E LGW  E DS
Sbjct: 133 DVVGSDVFDSARHLAAEGNGGRVGRIAGDPLDAEALGWPPEFDS 176

[Close]

BLAST of CmoCh02G010980 vs. NCBI nr
Match: ACN31988.1 (unknown [Zea mays])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 57  VVSGHPE------DKHLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDSDVTDSTGHFTA 116
           VV+GHPE      +   + E+V D         +  G L VD   +  + V D+ GH  A
Sbjct: 143 VVAGHPEHPLHGVEAEAAHEDVPDEAAPPGAGLDPDGRLRVDGHAVLGAHVADAAGHLAA 202

Query: 117 EGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVFNSSIDARICEN 171
           + + G    DA +  D++VL  H E D++LVP  L  +AVV GD+ AV +     RI  N
Sbjct: 203 QRDHGARGGDAGQPPDDDVLARHVEPDAVLVPPALHGHAVVAGDDVAVLDLDTRGRIRVN 262

The following BLAST results are available for this feature:

BLAST of CmoCh02G010980 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G010980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A4LUY1	2.9e-11	38.84	Protein kinase domain-containing protein (Fragment) OS=Rhododendron williamsianu...	[more]
A0A426YLG4	2.3e-08	34.38	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00050385 PE=4 SV=1	[more]
A0A5A7QP43	1.9e-07	35.58	UDP-N-acetylglucosamine1-carboxyvinyltransferase OS=Striga asiatica OX=4170 GN=S...	[more]
C0PCU3	7.3e-07	34.17	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of CmoCh02G010980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE9464826.1	5.9e-11	38.84	hypothetical protein C3L33_03262, partial [Rhododendron williamsianum]	[more]
RZS18506.1	1.9e-09	33.33	hypothetical protein BHM03_00050794 [Ensete ventricosum]	[more]
RRT52567.1	4.7e-08	34.38	hypothetical protein B296_00050385 [Ensete ventricosum]	[more]
GER46678.1	4.0e-07	35.58	UDP-N-acetylglucosamine1-carboxyvinyltransferase [Striga asiatica]	[more]
ACN31988.1	1.5e-06	34.17	unknown [Zea mays]	[more]

BLAST of CmoCh02G010980 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G010980.1	CmoCh02G010980.1	mRNA