CmoCh02G010270 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G010270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S13
Location	Cmo_Chr02: 6246191 .. 6248102 (+)
RNA-Seq Expression	CmoCh02G010270
Synteny	CmoCh02G010270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATTGTGAAATTAGGGTTTCTGGCATAGTGCAAAAGTAAGAGGTTGAAGAAGCTCCATTGCACTTCTATCTTCGCCGTCGTTGCCGCCATGGGTCGCATGCACAGCCGTGGGTCTCTCTCTCTCTCTATATATATATATGTGTGTGTGTAACTTTGTTTTTATGCTAATTTGGGTATCGCTAACTATGATTTTGTGCGTTTTGTTTGCAATAGGAAGGGTATTTCTGCCTCAGCGCTGCCTTACAAGAGAACTCCACCAGGTTGGCTGAAGATTTCTTCACAAGATGTAAGATTCTTCCTTATTATACTGCAAAATTTTCCTTTAGGAGCATGAATTGCTATCGTGCATTTCTGTTTCACTGCCGTGTAGAATCCCTATGTGCATTTGGACGGTGTTTGTTAATGGATTTTTGACTGGTTTGGGTTTCAGGTAGGAGAGAACATTTGCAAATTCGCGAAGAAGGGACTTACACCGTCACAAATTGGCGTTATTCTTCGTGATTCCCATGGTATAGCGCAGGTCAAGAGCGTTACAGGAAGCAAGATTTTGCGAATTCTCAAGGCTCACGGTACAATCTTTTTTTCTTCGATAGTGTAACAATGTGTTTCGGGAAATCAGAAAATTGTGAGATAATTGGAAGGATTCGTTGTGATCGGTTTTATGTTTATTTTAGATTTTTGGATGCTGATCGTGGAAGTGTATGGATTCAGATTATTTGAATTTCCTTGAATTGGTGTGTAGGTCTTGCTCCTGAAATTCCCGAGGATTTATACCACCTTATTAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCCAAATTTCGTTTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCCGTCTGGAAATAGTAAGTTGGGCTTGCTCTTCTTGATTTGTAGCTTTTCGCACTTGTAGTATGTATAGCATATCAATATATTCTTGCCAAAGGTTGGGTTCTTAGCTTTCAGTTTTTACCGCTTATTTTCAAATGCATGCCCATTAATTACTTAGTTATTAATATGGAATTTTCTGCTGGTATATTTTGAAATGCACAGTTCTGTCAGTATAATCAGCATTTTATGTCGTTCCAATGAACTGTTCTTGAATAGATTTCTGAATCATGTAGTACTGTGATAGTTGTGTTCGGTAGTTCATTTAAAGAGATGTATTAGACAAAAGGTACCTGCTTTATAAACTTTTTAGATAAGTTCATAATATATGTGACTTGTGACACTTTCTCTATGAAGCACATCCACTTTAGTTTAGATTGAGACATGTCCATATTTGACTCATACCGAACAACTTGTTCGGAAAAGTATAATAAAAAAGTCGTATATGACTAATGATGCATTTCGAAATGCCAACCTGAGAATACATTTTGAGAGTAAAATTCATCCAACTTACTATTGTAAATGTCTTTTGGGTATTAAAACCTAGACTTTTAGAGTAAAATGCACCATATTTGTGGGTGGTTGGTTCTCAAATCCATGTTGGTAATCACAATCTTGATATAGAAGTTTTACTCACATTTCTGCTCCTTCACTCTGCAGCGAGTCTACCACAGCCAGCACCCTCGTGGCTTAGATGGGGCCTGTGGGGATTGGATTTATTCTGAATCAGCAGCTGATTGCTTCGTGATTTGAGATGAAAAAATTTTGTTTATTTAATTGGGGCCTTTAGGTGTTTACTTCCATCTCCTTTTCCCGTTGAATGCTCTCTTTGTAATGGAAAAACTTGAAATGTGATCCAACGATTGCCTAGTCCATGGGTCATTTCTCTATGTTATGTGAAATTTTATCCAATTCATTTTATAATTATTAGTATCTATTTTCGAGCCACTAAGACCTAA

mRNA sequence

CGAATTGTGAAATTAGGGTTTCTGGCATAGTGCAAAAGTAAGAGGTTGAAGAAGCTCCATTGCACTTCTATCTTCGCCGTCGTTGCCGCCATGGGTCGCATGCACAGCCGTGGGAAGGGTATTTCTGCCTCAGCGCTGCCTTACAAGAGAACTCCACCAGGTTGGCTGAAGATTTCTTCACAAGATGTAGGAGAGAACATTTGCAAATTCGCGAAGAAGGGACTTACACCGTCACAAATTGGCGTTATTCTTCGTGATTCCCATGGTATAGCGCAGGTCAAGAGCGTTACAGGAAGCAAGATTTTGCGAATTCTCAAGGCTCACGGTCTTGCTCCTGAAATTCCCGAGGATTTATACCACCTTATTAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCCAAATTTCGTTTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCCGTCTGGAAATATATCTATTTTCGAGCCACTAAGACCTAA

Coding sequence (CDS)

ATGGGTCGCATGCACAGCCGTGGGAAGGGTATTTCTGCCTCAGCGCTGCCTTACAAGAGAACTCCACCAGGTTGGCTGAAGATTTCTTCACAAGATGTAGGAGAGAACATTTGCAAATTCGCGAAGAAGGGACTTACACCGTCACAAATTGGCGTTATTCTTCGTGATTCCCATGGTATAGCGCAGGTCAAGAGCGTTACAGGAAGCAAGATTTTGCGAATTCTCAAGGCTCACGGTCTTGCTCCTGAAATTCCCGAGGATTTATACCACCTTATTAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCCAAATTTCGTTTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCCGTCTGGAAATATATCTATTTTCGAGCCACTAAGACCTAA

Protein sequence

MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYIYFRATKT

Homology

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BLAST of CmoCh02G010270 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-73
Identity = 137/141 (97.16%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-70
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ P WLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.8e-70
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT P WLKISSQDV E ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.9e-70
Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ P WLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 121/141 (85.82%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPP WLK ++ DV E I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYK+TKKLPP WKY
Sbjct: 121 RIHRLARYYKRTKKLPPTWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy TrEMBL
Match: A0A6J1H1X6 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111459688 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.8e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy TrEMBL
Match: A0A6J1CQC4 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. ExPASy TrEMBL
Match: A0A6J1DES0 (40S ribosomal protein S13 OS=Momordica charantia OX=3673 GN=LOC111020380 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.7e-72
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. NCBI nr
Match: XP_022958472.1 (40S ribosomal protein S13-like [Cucurbita moschata] >KAG7035582.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.0 bits (728), Expect = 3.6e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. NCBI nr
Match: KAG6605673.1 (40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.0 bits (728), Expect = 3.6e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 38  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 97

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 98  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 157

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 158 RIHRLARYYKKTKKLPPVWKY 178

[Close]

BLAST of CmoCh02G010270 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 9.0e-72
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. NCBI nr
Match: XP_010101741.2 (40S ribosomal protein S13 [Morus notabilis] >XP_022152725.1 40S ribosomal protein S13 [Momordica charantia])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of CmoCh02G010270 vs. NCBI nr
Match: XP_010053902.1 (40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal protein S13 [Eucalyptus grandis] >XP_030468523.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030468524.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030529924.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030529925.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030544418.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_031376603.1 40S ribosomal protein S13 [Punica granatum] >XP_031381691.1 40S ribosomal protein S13 [Punica granatum] >KAF3439993.1 hypothetical protein FNV43_RR18271 [Rhamnella rubrinervis] >KAF8020424.1 hypothetical protein BT93_G0976 [Corymbia citriodora subsp. variegata] >PON34614.1 Ribosomal protein [Parasponia andersonii] >KAF3440239.1 hypothetical protein FNV43_RR18522 [Rhamnella rubrinervis] >KAF8020425.1 hypothetical protein BT93_G0977 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

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BLAST of CmoCh02G010270 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 267.3 bits (682), Expect = 7.3e-72
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ P WLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

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BLAST of CmoCh02G010270 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 265.4 bits (677), Expect = 2.8e-71
Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ P WLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

The following BLAST results are available for this feature:

BLAST of CmoCh02G010270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.7e-73	97.16	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	1.0e-70	93.62	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	1.8e-70	93.62	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	3.9e-70	92.91	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	1.2e-63	85.82	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of CmoCh02G010270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H1X6	1.8e-73	100.00	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111459688 PE=...	[more]
A0A6J1KV63	4.3e-72	98.58	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ...	[more]
A0A6J1HJL3	4.3e-72	98.58	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=...	[more]
A0A6J1CQC4	4.3e-72	98.58	40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE...	[more]
A0A6J1DES0	5.7e-72	98.58	40S ribosomal protein S13 OS=Momordica charantia OX=3673 GN=LOC111020380 PE=3 SV...	[more]

BLAST of CmoCh02G010270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958472.1	3.6e-73	100.00	40S ribosomal protein S13-like [Cucurbita moschata] >KAG7035582.1 40S ribosomal ...	[more]
KAG6605673.1	3.6e-73	100.00	40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022143980.1	9.0e-72	98.58	40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom...	[more]
XP_010101741.2	1.2e-71	98.58	40S ribosomal protein S13 [Morus notabilis] >XP_022152725.1 40S ribosomal protei...	[more]
XP_010053902.1	1.5e-71	98.58	40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal pro...	[more]

BLAST of CmoCh02G010270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	7.3e-72	93.62	ribosomal protein S13A	[more]
AT3G60770.1	2.8e-71	92.91	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..60 e-value: 1.1E-37 score: 141.1
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 1..60 e-value: 5.1E-30 score: 103.3
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 70..149 e-value: 7.3E-13 score: 58.7
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 74..143 e-value: 7.1E-15 score: 55.0
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 98..128
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 70..141 e-value: 2.15935E-25 score: 90.255
None	No IPR available	GENE3D	4.10.860.130		coord: 35..82 e-value: 2.9E-29 score: 102.5
None	No IPR available	GENE3D	1.10.287.10		coord: 83..148 e-value: 2.1E-35 score: 122.8
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..142
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..142
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..149 score: 30.618179
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 66..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G010270.1	CmoCh02G010270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome