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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTAGAGCTTATGGTAATGAAGTTATTGTCACCTCCAGCCATGAATGGTGGTTTTAACATAACTTTTCATTCTAACAATGTTGTTCACTCTCTACCGTTCGCGTTCTTTGTGTATGTTCGATCTTCTTTTGGGCCCGAGGATTGGAAGAACGAAAAGGTCCGTATTTTCTTTCTTTACTTTATTTTCAATTAATAGAGTAACTAAGGTGATGATTGGACATTTTTCCTATGCTGAATTAAGGTGGAACAAAGCTCGACCGACCGTTCGGTATTTAGGCATCAACTCCACATGTACATTGTCGGTGCTTTTTCTACAATAAGGGTCAGTTGTTTGCTTGTGTTCTAACTGGATTCTCATTGATTTATGGTGTTTTAGACACAGTTGGTTTTGGGTTTCCCCTTAAGATTTTTAAAACGCGTCTGCTATGGAGAGGTTTCTACACTCCAACCAACGCGGGATCTCAATATCACCACCATTCATGTGTAATGTTGGTTTTTTTCCCTTGCTATTGATTCTCGTATATGCCATTTTTTCCATTGATGAAGGTACTTCAAACTAATAATGGATCATGA mRNA sequence ATGGTAGAGCTTATGGTAATGAAGTTATTGTCACCTCCAGCCATGAATGGTGGTTTTAACATAACTTTTCATTCTAACAATGTTGTTCACTCTCTACCGTTCGCGTTCTTTGTGTATGTTCGATCTTCTTTTGGGCCCGAGGATTGGAAGAACGAAAAGGTGGAACAAAGCTCGACCGACCGTTCGGTATTTAGGCATCAACTCCACATGTACATTGTCGGTGCTTTTTCTACAATAAGGGTACTTCAAACTAATAATGGATCATGA Coding sequence (CDS) ATGGTAGAGCTTATGGTAATGAAGTTATTGTCACCTCCAGCCATGAATGGTGGTTTTAACATAACTTTTCATTCTAACAATGTTGTTCACTCTCTACCGTTCGCGTTCTTTGTGTATGTTCGATCTTCTTTTGGGCCCGAGGATTGGAAGAACGAAAAGGTGGAACAAAGCTCGACCGACCGTTCGGTATTTAGGCATCAACTCCACATGTACATTGTCGGTGCTTTTTCTACAATAAGGGTACTTCAAACTAATAATGGATCATGA Protein sequence MVELMVMKLLSPPAMNGGFNITFHSNNVVHSLPFAFFVYVRSSFGPEDWKNEKVEQSSTDRSVFRHQLHMYIVGAFSTIRVLQTNNGS
Homology
BLAST of CmoCh02G010060 vs. NCBI nr
Match: KAG6605654.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33 Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0 Query: 14 AMNGGFNITFHSNNVVHSLPFAFFVYVRSSFGPEDWKNEKVEQSSTDRSVFRHQLHMYIV 73 AMNGGFNITFHSNNVVHSLPFAFF Y +SSFGPE+WKNEKVEQSSTDRSVFRHQLHMYIV Sbjct: 1424 AMNGGFNITFHSNNVVHSLPFAFFAYDQSSFGPENWKNEKVEQSSTDRSVFRHQLHMYIV 1483
Query: 74 GAFSTIRVLQTNNGS 89 GAFSTIRVLQTNNGS Sbjct: 1484 GAFSTIRVLQTNNGS 1498
BLAST of CmoCh02G010060 vs. NCBI nr
Match: KAG7035563.1 (hypothetical protein SDJN02_02360, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 145.2 bits (365), Expect = 2.7e-31 Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0 Query: 1 MVELMVMKLLSPPAMNGGFNITFHSNNVVHSLPFAFFVYVRSSFGPEDWKNEKVEQSSTD 60 MVELMVMKLLSPPAMNGGFNITFHSNNVVHSLPFAFF Y +SSFGPE+WKNEKVEQSSTD Sbjct: 1 MVELMVMKLLSPPAMNGGFNITFHSNNVVHSLPFAFFAYDQSSFGPENWKNEKVEQSSTD 60
Query: 61 RSVFRHQLHMYIV 74 RSVFRHQLHMYIV Sbjct: 61 RSVFRHQLHMYIV 73
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6605654.1 | 8.3e-33 | 94.67 | Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... | [more] |
KAG7035563.1 | 2.7e-31 | 94.52 | hypothetical protein SDJN02_02360, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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