CmoCh02G010000 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G010000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	origin of replication complex subunit 3 isoform X2
Location	Cmo_Chr02: 6124078 .. 6124902 (-)
RNA-Seq Expression	CmoCh02G010000
Synteny	CmoCh02G010000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTCCCTCCATAGACCTATTTTTTGCATGCTACTTAAAGTAGCATCAGTTAGTGCATTTATCAGTCATGTTTTTCTTTATCACGTACGTGCAATATGATTAATTTTTACCAAAGGGTTTTCAGGATGGGAACCGTGCTCTTTTCCTAGAAGTTCTATCCAAGCACGCTTCAGATTTCCTGTCTGATTCAAGGTATTCATGAAAAGCTCAGAAACTTCATGTAATTTTGTGAACGATTTATTTATAGTATATTGTTGACACAACATTTTTAGGTACCCATTGGTGGAAGGAACTGGTAATAATCTTGGTAATGTATTATCAGAATTAGAGAGATGGCAGAAGGGCTGGAGTGCTGTTGTCCAGGTGGCCATAACTTCATTAGTCTTTCTTTTCTTTCTTTTTTGTAATGGAACATTTTCCCTTTCATGGAATTCGACTCTCAATATCTATCCTTTGCAGTGTCTTTATCAAGTTGGGAAGTATGGCAAAGTTCAATTGCTTGACTTACTTTGTGAGGCACTCGATCCACAACTTTTCAAACCAATAACTTCTGAAAATTCAAGTAGATTGCAGCAAGGAAAGGGGATGTCGTTTTCAAGTAGTTGTGAGCTACAATATCAATTCTCATCTCGCAAGGATGGGTATATTTATCAAGCAATTCGAAAAGTGAGGTAGGTCATAAAGTTTACAGTAGCGTGATATATTGCAGTTGTTCATCCTAGGGATTACATAACTACAGACTTAAGCTTTAACATTGCCATGTACTTTTCCCCAAAAATTTTTTATTCCTCTTCTAAAAGATATAAACAGGACTTGCATTAA

mRNA sequence

ATGCACTCCCTCCATAGACCTATTTTTTGCATGCTACTTAAAGTAGCATCAGATGGGAACCGTGCTCTTTTCCTAGAAGTTCTATCCAAGCACGCTTCAGATTTCCTGTCTGATTCAAGGTACCCATTGGTGGAAGGAACTGGTAATAATCTTGGTAATGTATTATCAGAATTAGAGAGATGGCAGAAGGGCTGGAGTGCTGTTGTCCAGTGTCTTTATCAAGTTGGGAAGTATGGCAAAGTTCAATTGCTTGACTTACTTTGTGAGGCACTCGATCCACAACTTTTCAAACCAATAACTTCTGAAAATTCAAGTAGATTGCAGCAAGGAAAGGGGATGTCGTTTTCAAGTAGTTGTGAGCTACAATATCAATTCTCATCTCGCAAGGATGGGGATTACATAACTACAGACTTAAGCTTTAACATTGCCATGTACTTTTCCCCAAAAATTTTTTATTCCTCTTCTAAAAGATATAAACAGGACTTGCATTAA

Coding sequence (CDS)

ATGCACTCCCTCCATAGACCTATTTTTTGCATGCTACTTAAAGTAGCATCAGATGGGAACCGTGCTCTTTTCCTAGAAGTTCTATCCAAGCACGCTTCAGATTTCCTGTCTGATTCAAGGTACCCATTGGTGGAAGGAACTGGTAATAATCTTGGTAATGTATTATCAGAATTAGAGAGATGGCAGAAGGGCTGGAGTGCTGTTGTCCAGTGTCTTTATCAAGTTGGGAAGTATGGCAAAGTTCAATTGCTTGACTTACTTTGTGAGGCACTCGATCCACAACTTTTCAAACCAATAACTTCTGAAAATTCAAGTAGATTGCAGCAAGGAAAGGGGATGTCGTTTTCAAGTAGTTGTGAGCTACAATATCAATTCTCATCTCGCAAGGATGGGGATTACATAACTACAGACTTAAGCTTTAACATTGCCATGTACTTTTCCCCAAAAATTTTTTATTCCTCTTCTAAAAGATATAAACAGGACTTGCATTAA

Protein sequence

MHSLHRPIFCMLLKVASDGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDGDYITTDLSFNIAMYFSPKIFYSSSKRYKQDLH

Homology

[Close]

BLAST of CmoCh02G010000 vs. ExPASy Swiss-Prot
Match: Q0IY07 (Origin of replication complex subunit 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ORC3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 28  LSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLL 87
           L K+AS   S +R      +G+N+ + LSEL   QK WS+V+ CLY+ GK+GKVQLLD+ 
Sbjct: 389 LRKYASGLPSCTREKDSTKSGDNMVDGLSELMNIQKDWSSVLLCLYEAGKHGKVQLLDIF 448

Query: 88  CEALDPQL 96
           CEA++P L
Sbjct: 449 CEAVNPDL 456

[Close]

BLAST of CmoCh02G010000 vs. ExPASy Swiss-Prot
Match: Q6E7H0 (Origin of replication complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ORC3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-10
Identity = 42/122 (34.43%), Postives = 55/122 (45.08%), Query Frame = 0


Query: 2   HSLHRPIFCMLLKVASDG-------NRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNV 61
           H    P+  ML     DG          L  E   KHA D  S +R  +   T   L + 
Sbjct: 357 HFSLEPLSIMLEHFCHDGVNQLSGEGTELLTEATMKHAFDLPSVTRNKITRSTFEMLPHF 416

Query: 62  LSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQ-----LFKPITSENSSRLQQ 112
           L +L+R    WS VV CLY+ GK+ K++LLD+ CE LDP+      F P    NS     
Sbjct: 417 LLDLQRMPNPWSIVVLCLYEAGKFDKLRLLDIFCEILDPEARYLKYFSPSEIVNSQSHNS 476

[Close]

BLAST of CmoCh02G010000 vs. ExPASy TrEMBL
Match: A0A6J1H3F7 (origin of replication complex subunit 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459306 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 375 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 434

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 435 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 488

[Close]

BLAST of CmoCh02G010000 vs. ExPASy TrEMBL
Match: A0A6J1H3G2 (origin of replication complex subunit 3 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111459306 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 375 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 434

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 435 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 488

[Close]

BLAST of CmoCh02G010000 vs. ExPASy TrEMBL
Match: A0A6J1H0J7 (origin of replication complex subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459306 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 375 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 434

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 435 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 488

[Close]

BLAST of CmoCh02G010000 vs. ExPASy TrEMBL
Match: A0A6J1H1M8 (origin of replication complex subunit 3 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111459306 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 372 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 431

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 432 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 485

[Close]

BLAST of CmoCh02G010000 vs. ExPASy TrEMBL
Match: A0A6J1K0R6 (origin of replication complex subunit 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491354 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.6e-57
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNN+GNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 375 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNVGNVLSELERWQKGWSAVVQCLYQVGK 434

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKG+SFSSSCELQYQFSSRKDG
Sbjct: 435 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGVSFSSSCELQYQFSSRKDG 488

[Close]

BLAST of CmoCh02G010000 vs. NCBI nr
Match: XP_022957914.1 (origin of replication complex subunit 3 isoform X1 [Cucurbita moschata] >XP_022957915.1 origin of replication complex subunit 3 isoform X1 [Cucurbita moschata] >KAG6605650.1 Origin of replication complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 375 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 434

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 435 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 488

[Close]

BLAST of CmoCh02G010000 vs. NCBI nr
Match: XP_022957916.1 (origin of replication complex subunit 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 375 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 434

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 435 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 488

[Close]

BLAST of CmoCh02G010000 vs. NCBI nr
Match: XP_023534344.1 (origin of replication complex subunit 3 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 375 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 434

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 435 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 488

[Close]

BLAST of CmoCh02G010000 vs. NCBI nr
Match: XP_023534346.1 (origin of replication complex subunit 3 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 372 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 431

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 432 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 485

[Close]

BLAST of CmoCh02G010000 vs. NCBI nr
Match: XP_023534343.1 (origin of replication complex subunit 3 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 18  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 77
           DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK
Sbjct: 375 DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGK 434

Query: 78  YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 132
           YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG
Sbjct: 435 YGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSSSCELQYQFSSRKDG 488

[Close]

BLAST of CmoCh02G010000 vs. TAIR 10
Match: AT5G16690.1 (origin recognition complex subunit 3 )

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 42/122 (34.43%), Postives = 55/122 (45.08%), Query Frame = 0


Query: 2   HSLHRPIFCMLLKVASDG-------NRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNV 61
           H    P+  ML     DG          L  E   KHA D  S +R  +   T   L + 
Sbjct: 357 HFSLEPLSIMLEHFCHDGVNQLSGEGTELLTEATMKHAFDLPSVTRNKITRSTFEMLPHF 416

Query: 62  LSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQ-----LFKPITSENSSRLQQ 112
           L +L+R    WS VV CLY+ GK+ K++LLD+ CE LDP+      F P    NS     
Sbjct: 417 LLDLQRMPNPWSIVVLCLYEAGKFDKLRLLDIFCEILDPEARYLKYFSPSEIVNSQSHNS 476

The following BLAST results are available for this feature:

BLAST of CmoCh02G010000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0IY07	1.3e-10	50.00	Origin of replication complex subunit 3 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q6E7H0	5.0e-10	34.43	Origin of replication complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ORC3 ...	[more]

BLAST of CmoCh02G010000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3F7	8.7e-58	100.00	origin of replication complex subunit 3 isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1H3G2	8.7e-58	100.00	origin of replication complex subunit 3 isoform X4 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1H0J7	8.7e-58	100.00	origin of replication complex subunit 3 isoform X2 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1H1M8	8.7e-58	100.00	origin of replication complex subunit 3 isoform X3 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1K0R6	5.6e-57	98.25	origin of replication complex subunit 3 isoform X2 OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CmoCh02G010000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957914.1	1.8e-57	100.00	origin of replication complex subunit 3 isoform X1 [Cucurbita moschata] >XP_0229...	[more]
XP_022957916.1	1.8e-57	100.00	origin of replication complex subunit 3 isoform X2 [Cucurbita moschata]	[more]
XP_023534344.1	1.8e-57	100.00	origin of replication complex subunit 3 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023534346.1	1.8e-57	100.00	origin of replication complex subunit 3 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023534343.1	1.8e-57	100.00	origin of replication complex subunit 3 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh02G010000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16690.1	3.5e-11	34.43	origin recognition complex subunit 3	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G010000.1	CmoCh02G010000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0048527	lateral root development
biological_process	GO:0009744	response to sucrose
cellular_component	GO:0031261	DNA replication preinitiation complex
cellular_component	GO:0005664	nuclear origin of replication recognition complex
cellular_component	GO:0005656	nuclear pre-replicative complex
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0008270	zinc ion binding