CmoCh02G009990 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G009990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionorigin of replication complex subunit 3
LocationCmo_Chr02: 6115771 .. 6118178 (-)
RNA-Seq ExpressionCmoCh02G009990
SyntenyCmoCh02G009990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGCTCTGCGATGTTGAAGTGAACCTAGGTGGGTTGCACCAGCTATTGGCATTTCTTCTCTCCTTTATCTTTGGATTAGTCAATTGGGCAACCAGTCGATTATTGTTGCAATTTCTTGATTTCTCTGCAATCTCATCTTTGTTCATAGAAAAATGTAGGAGATCAAACATGTAGGTCTAGAACAAGTAGCAAAATTTACCCTGGGGGATTAGCGAAGTTAGTATGTGCACGCTTGCACCAACCATGCATACTTATTCCCAACAGAATTGACTGTTGTCAAGCACACCTCACCCTGTTCATGCTCTTTGACTTTATCTGCAAGTTATCTTGGTTCCATCCATTTATTTATTTATTTATTTATTCCTAGGCCTTGATTGGAGATCCAAGAAGAAGGATTCAAGTGGATCTTCTGGAGTTCCAGAAAATCATAAAATGTACTTGTTGCAATGAGAACAGAAATAGTCTTTTACCATGTGCGCACGATTCAACCATTATGTGAGTAAAACTGACATTTGCATCACAATTTTCCATATATTTAAACTATCAACCTCTATAATTTGATAATGTAGTATTCCTTTAAATCATAATTTGGTCTTTGACTTGTACACTTTTTTCATTCTTCTTATATTTTCTGTTCTACCGGGAAAGAATTTTCATTCAACTATTTAGTGGATTCCGCATAGTACAACAGCCCTAGATTAAAGGGGATGATCTGTACAAGAATGGAACAAAAACCAACGGTAGAAAATATACAAAGTGAGTGAGGTAAGAAACCTAATAAACGTGGAAAGAAGAATCTAAAAGAATATGTGTGTGTGTGTGTATATTTATAAGAAACAAAGAAGTATATTATGCAAAAAGCCCCAAAACTACAACCTTGAGGCGAGGGGGAAGAGGAAAGCCTCCAAAAAAAAAAATCTCCTTTCACAACAATAGTGAGCCATCCTAATAAAATAATCTCCCATCAAAGTGAAGGGAAAAGGGGAGAGGGGGTCTCCTTGTCTTAAGCCTCTTTTAGCCATAATCTTTCTGTGGGGTGTGCCATTAATGAAGATGGAAAAGTATACCGTGGAGAGACATCCCTTCATTTAAATCCTCCATGTAGAGCCGAAGCCCTTTCTATCATGGATAAATTCCAAGTACTCTCAATCAGCTTTATCACAGACCTTCTCATACTCATGGTCCAGAAGTCTAAATGCACACTCGTACAAGAACGATTAAGCACTTGCCCATCATTGATTTCTCCCCAACCTCTCAGTGCTTACGTTTTTTCCCTTCCAGCTTTTCATCCAGCACAACAAATTACTTCGCCTGCCCACTCTTAGAAAATTTAAGGAATTAATAGAACTTTACCGAGGTGTCACATTCCCCTAGATTATAGTAATCTAATGGAATGTGGGTTTACAACTTGACTATTGGGTGAGTTAGTGAGCTTATAACTAGGTTTGTAGTATTTTTATCTCTCTTTGAGAGCGTAAAACCAGATTAGTAGCTTCCACTTTCCCCATGAATATAATTGAGAATTCATGCTTTGCTCCAATTCCAAATTGATTTGGTAGATATCAAACTCTAAATACATCATGCGAATAATAAACGGTGTTGAGGCATCTTACCAAGGGTCATCGCAAGTACCCTCTCTCAAGAGAGCAAGTAGCCTGTGAGTCTGTATATGTAACTCAAGGGACCATCCTTCCCTGTTCTATGGCATTTCTTTCATGTAACCTTTGTAACCTATATGGAGTTAATTCATTAACATATATTTGTGTGGAAGATAAAAGGCTAACATTTCTGGTGTATGTTAGAATTTTTCTGTGTCGCATTCTTCAGTTTTTAGACCAAAGATTTTTATGCAACTTTCATGTAGGTATAACCTAGCACAAGAGCATGGTGATCTCATCAATCTCCATGATTGGTTCCAATCGTTCAAGACAGTTGTTAGTCATCCTGGTACTAAAGGGAATCACAGGACGAAGCAAGGCTCTACACCAAAGAAAAAAAAAGATAAACCTATCCTTGAAAACAAAAGTGATGCATCAATTCAGTATCCTTTTACACTATTGTATGCAGAAGTTGTAGTCTATGCTAATTAGATCTGCAAAATTGGTTTATGAATGGAGTTTTCCATCTCCATATTTTGGGTGTTCTCTTCTAGCATATTGAAAAGTAAGAAAAAGGAAAACTCACAAGATTGTGACACTATTCCGTGTTTCTTGTTTTGTCCAAGAAGCATCTGTAGAAATAGTTCTGATTATATATCCTATGAAGCGTCGATGCGGTAAATATTTTGTTGATCCATTTTAAGATATCCTTGAAACCCTTTAACCCCTTTTCAACAGAGCCAGGTTTTGTACTGCTGTTACTGAACTGCAGATTACAGGGTTGCTTCGGATGCCAAGCAAAAGACGGCC

mRNA sequence

CGGCTCTGCGATGTTGAAGTGAACCTAGGCCTTGATTGGAGATCCAAGAAGAAGGATTCAAGTGGATCTTCTGGAGTTCCAGAAAATCATAAAATGTATAACCTAGCACAAGAGCATGGTGATCTCATCAATCTCCATGATTGGTTCCAATCGTTCAAGACAGTTGTTAGTCATCCTGATTACAGGGTTGCTTCGGATGCCAAGCAAAAGACGGCC

Coding sequence (CDS)

CGGCTCTGCGATGTTGAAGTGAACCTAGGCCTTGATTGGAGATCCAAGAAGAAGGATTCAAGTGGATCTTCTGGAGTTCCAGAAAATCATAAAATGTATAACCTAGCACAAGAGCATGGTGATCTCATCAATCTCCATGATTGGTTCCAATCGTTCAAGACAGTTGTTAGTCATCCTGATTACAGGGTTGCTTCGGATGCCAAGCAAAAGACGGCC

Protein sequence

RLCDVEVNLGLDWRSKKKDSSGSSGVPENHKMYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQKTA
Homology
[Close]
BLAST of CmoCh02G009990 vs. ExPASy Swiss-Prot
Match: Q6E7H0 (Origin of replication complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ORC3 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.6e-06
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 22  GSSGVPENHK---MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQKT 72
           G++ +P  H    +Y LAQEH D+INLHDW+QSFKT++       +S AKQK+
Sbjct: 627 GTTLLPSMHDTSILYKLAQEHADVINLHDWYQSFKTIL----IPRSSKAKQKS 675

[Close]
BLAST of CmoCh02G009990 vs. ExPASy TrEMBL
Match: A0A6J1H3F7 (origin of replication complex subunit 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459306 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQ 70
           MYNLAQEHGDLINLHDWFQSFKTVVSHP  +     KQ
Sbjct: 647 MYNLAQEHGDLINLHDWFQSFKTVVSHPGTKGNHRTKQ 684

[Close]
BLAST of CmoCh02G009990 vs. ExPASy TrEMBL
Match: A0A6J1H0J7 (origin of replication complex subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459306 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQ 70
           MYNLAQEHGDLINLHDWFQSFKTVVSHP  +     KQ
Sbjct: 646 MYNLAQEHGDLINLHDWFQSFKTVVSHPGTKGNHRTKQ 683

[Close]
BLAST of CmoCh02G009990 vs. ExPASy TrEMBL
Match: A0A6J1H1M8 (origin of replication complex subunit 3 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111459306 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQ 70
           MYNLAQEHGDLINLHDWFQSFKTVVSHP  +     KQ
Sbjct: 644 MYNLAQEHGDLINLHDWFQSFKTVVSHPGTKGNHRTKQ 681

[Close]
BLAST of CmoCh02G009990 vs. ExPASy TrEMBL
Match: A0A6J1K0R6 (origin of replication complex subunit 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491354 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHP 60
           MYNLAQEHGDLINLHDWFQSFKTVVSHP
Sbjct: 646 MYNLAQEHGDLINLHDWFQSFKTVVSHP 673

[Close]
BLAST of CmoCh02G009990 vs. ExPASy TrEMBL
Match: A0A6J1K3I8 (origin of replication complex subunit 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491354 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHP 60
           MYNLAQEHGDLINLHDWFQSFKTVVSHP
Sbjct: 647 MYNLAQEHGDLINLHDWFQSFKTVVSHP 674

[Close]
BLAST of CmoCh02G009990 vs. NCBI nr
Match: XP_022957914.1 (origin of replication complex subunit 3 isoform X1 [Cucurbita moschata] >XP_022957915.1 origin of replication complex subunit 3 isoform X1 [Cucurbita moschata] >KAG6605650.1 Origin of replication complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQ 70
           MYNLAQEHGDLINLHDWFQSFKTVVSHP  +     KQ
Sbjct: 647 MYNLAQEHGDLINLHDWFQSFKTVVSHPGTKGNHRTKQ 684

[Close]
BLAST of CmoCh02G009990 vs. NCBI nr
Match: XP_022957916.1 (origin of replication complex subunit 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQ 70
           MYNLAQEHGDLINLHDWFQSFKTVVSHP  +     KQ
Sbjct: 646 MYNLAQEHGDLINLHDWFQSFKTVVSHPGTKGNHRTKQ 683

[Close]
BLAST of CmoCh02G009990 vs. NCBI nr
Match: KAG7035560.1 (Origin of replication complex subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQ 70
           MYNLAQEHGDLINLHDWFQSFKTVVSHP  +     KQ
Sbjct: 644 MYNLAQEHGDLINLHDWFQSFKTVVSHPGTKGNHRTKQ 681

[Close]
BLAST of CmoCh02G009990 vs. NCBI nr
Match: XP_022957918.1 (origin of replication complex subunit 3 isoform X3 [Cucurbita moschata])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQ 70
           MYNLAQEHGDLINLHDWFQSFKTVVSHP  +     KQ
Sbjct: 644 MYNLAQEHGDLINLHDWFQSFKTVVSHPGTKGNHRTKQ 681

[Close]
BLAST of CmoCh02G009990 vs. NCBI nr
Match: XP_023534344.1 (origin of replication complex subunit 3 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 32  MYNLAQEHGDLINLHDWFQSFKTVVSHP 60
           MYNLAQEHGDLINLHDWFQSFKTVVSHP
Sbjct: 646 MYNLAQEHGDLINLHDWFQSFKTVVSHP 673

[Close]
BLAST of CmoCh02G009990 vs. TAIR 10
Match: AT5G16690.1 (origin recognition complex subunit 3 )

HSP 1 Score: 50.4 bits (119), Expect = 6.8e-07
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 22  GSSGVPENHK---MYNLAQEHGDLINLHDWFQSFKTVVSHPDYRVASDAKQKT 72
           G++ +P  H    +Y LAQEH D+INLHDW+QSFKT++       +S AKQK+
Sbjct: 627 GTTLLPSMHDTSILYKLAQEHADVINLHDWYQSFKTIL----IPRSSKAKQKS 675

The following BLAST results are available for this feature:
BLAST of CmoCh02G009990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6E7H09.6e-0649.06Origin of replication complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ORC3 ... [more]
BLAST of CmoCh02G009990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H3F71.1e-0778.95origin of replication complex subunit 3 isoform X1 OS=Cucurbita moschata OX=3662... [more]
A0A6J1H0J71.1e-0778.95origin of replication complex subunit 3 isoform X2 OS=Cucurbita moschata OX=3662... [more]
A0A6J1H1M81.1e-0778.95origin of replication complex subunit 3 isoform X3 OS=Cucurbita moschata OX=3662... [more]
A0A6J1K0R61.4e-07100.00origin of replication complex subunit 3 isoform X2 OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1K3I81.4e-07100.00origin of replication complex subunit 3 isoform X1 OS=Cucurbita maxima OX=3661 G... [more]
BLAST of CmoCh02G009990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957914.12.2e-0778.95origin of replication complex subunit 3 isoform X1 [Cucurbita moschata] >XP_0229... [more]
XP_022957916.12.2e-0778.95origin of replication complex subunit 3 isoform X2 [Cucurbita moschata][more]
KAG7035560.12.2e-0778.95Origin of replication complex subunit 3, partial [Cucurbita argyrosperma subsp. ... [more]
XP_022957918.12.2e-0778.95origin of replication complex subunit 3 isoform X3 [Cucurbita moschata][more]
XP_023534344.12.9e-07100.00origin of replication complex subunit 3 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh02G009990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G16690.16.8e-0749.06origin recognition complex subunit 3 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040855ORC3, winged helix C-terminalPFAMPF18137ORC_WH_Ccoord: 20..68
e-value: 3.6E-8
score: 33.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G009990.1CmoCh02G009990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006270 DNA replication initiation
cellular_component GO:0031261 DNA replication preinitiation complex
cellular_component GO:0005664 nuclear origin of replication recognition complex
cellular_component GO:0005656 nuclear pre-replicative complex
molecular_function GO:0003688 DNA replication origin binding
molecular_function GO:0008270 zinc ion binding