CmoCh02G008810 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G008810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 5457584 .. 5458613 (-)
RNA-Seq ExpressionCmoCh02G008810
SyntenyCmoCh02G008810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAAAGGGTTGTACTCAATACACTGCTGACTGCTGAACTGGTATCACTGCTTGGTGTTTATGTGTTGCTATTTGCAGTTTGCAGCAATGGCGGGGCTCTGACCCCCGCCCGCCCACTATACATGCTGCTAAAGACCCTCTTTCCCCCACCAATGCCCATGGCCTTGGCCCCCACTTTATTGGCTTCTTTTTCGGATGAGATTAGATTAGATTAGATTGGATTAGCTTTGATCCAATTGATTTTCCATCTGTTTGTGTGATTGTGGGTCTCTTTCTTTTGCATTTTGGGAGATGGGCAATGGGGTTTAGGAGCTTTTAATTGGGTTGGCTGAATATGCCCAGTACCTGTTTGATAAAATGACTAAGTGAAGGGATCTTCTTGTTTATTAGGGAAAAAGATTGTACAAAGAGATAAAGATATATTATTTTTGTTGCATTAATGAAAACCAACCTTTTTGTCTTTGGTGGAGGGCCAGGGCGGCCTCACCCCCACACACTTTCACAGTGAAAGAAATTATTAATAAAGGAGAAGGGGGGAAGCTCCGAAGGGAAAGGGCAAAGCAAAGCAAAGAAGAAGGGGATGGGGAAGTGTGGGTTTTGTTCTGTCTTAGCCTGTCCCCGCCACCCACCCACACATATACGCACTCTCTCTCTCTAACACTCCAAAAGCCACCAAAGCATTGGCCTTTTTTCGCCTTTTGCTTCTGTGTTTCCTATGCAATTGTCTATGTCTGCTGCTTCTGCTCCCTCTTCTCAATACCTGCAAATGGGCGAGGAATCATACTTTGAATTTCTTGTTATTATTTGATACCCCTCTTTCTATCTTTTTAGCTACCACCCTACTGGGTTAGCATCCATCCAAACACTACTTTCTTGTTGTTTTTCTACTCATCCCCTTTCATTTCTCTCCCGTTCTTAGCTTTAATGGTATCTCTTCTGGGTATGTTTTTAGCAATTTTACCATGCTTTGACCTCATTTCCAGTTTTCTACAGCTCTGGTCTTCTTCTCACCTTATTGCCAATTGA

mRNA sequence

ATGCAGAAAAGGGTTGTACTCAATACACTGCTGACTGCTGAACTGCCTGTCCCCGCCACCCACCCACACATATACGCACTCTCTCTCTCTAACACTCCAAAAGCCACCAAAGCATTGGCCTTTTTTCGCCTTTTGCTTCTGTGTTTCCTATGCAATTGTCTATGTCTGCTGCTTCTGCTCCCTCTTCTCAATACCTGCAAATGGGCGAGGAATCATACTTTGAATTTCTTGTTATTATTTGATACCCCTCTTTCTATCTTTTTAGCTACCACCCTACTGGCTTTAATGGTATCTCTTCTGGGTATGTTTTTAGCAATTTTACCATGCTTTGACCTCATTTCCAGTTTTCTACAGCTCTGGTCTTCTTCTCACCTTATTGCCAATTGA

Coding sequence (CDS)

ATGCAGAAAAGGGTTGTACTCAATACACTGCTGACTGCTGAACTGCCTGTCCCCGCCACCCACCCACACATATACGCACTCTCTCTCTCTAACACTCCAAAAGCCACCAAAGCATTGGCCTTTTTTCGCCTTTTGCTTCTGTGTTTCCTATGCAATTGTCTATGTCTGCTGCTTCTGCTCCCTCTTCTCAATACCTGCAAATGGGCGAGGAATCATACTTTGAATTTCTTGTTATTATTTGATACCCCTCTTTCTATCTTTTTAGCTACCACCCTACTGGCTTTAATGGTATCTCTTCTGGGTATGTTTTTAGCAATTTTACCATGCTTTGACCTCATTTCCAGTTTTCTACAGCTCTGGTCTTCTTCTCACCTTATTGCCAATTGA

Protein sequence

MQKRVVLNTLLTAELPVPATHPHIYALSLSNTPKATKALAFFRLLLLCFLCNCLCLLLLLPLLNTCKWARNHTLNFLLLFDTPLSIFLATTLLALMVSLLGMFLAILPCFDLISSFLQLWSSSHLIAN
Homology
[Close]
BLAST of CmoCh02G008810 vs. ExPASy TrEMBL
Match: K7LTG3 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G070900 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 47  LCFLCNCLCLLLLLPLLNTCKWARNHTLNFLLLFDTPLSIF----LATTLLALMVSLLGM 106
           +CFLCNCLCLLLLLPLL+TCKW  NHTLNFLLLF+   S+F    L  + L +++++  +
Sbjct: 1   MCFLCNCLCLLLLLPLLSTCKWGWNHTLNFLLLFNIYSSLFFSYLLKKSCLGILLNMTFL 60

Query: 107 FLAILP 109
           F ++ P
Sbjct: 61  FFSVHP 66

[Close]
BLAST of CmoCh02G008810 vs. ExPASy TrEMBL
Match: A0A0B2P960 (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_024692 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 47  LCFLCNCLCLLLLLPLLNTCKWARNHTLNFLLLFDTPLSIF----LATTLLALMVSLLGM 106
           +CFLCNCLCLLLLLPLL+TCKW  NHTLNFLLLF+   S+F    L  + L +++++  +
Sbjct: 1   MCFLCNCLCLLLLLPLLSTCKWGWNHTLNFLLLFNIYSSLFFSYLLKKSCLGILLNMTFL 60

Query: 107 FLAILP 109
           F ++ P
Sbjct: 61  FFSVHP 66

[Close]
BLAST of CmoCh02G008810 vs. NCBI nr
Match: KAG4979781.1 (hypothetical protein JHK85_033739 [Glycine max] >KHN05726.1 hypothetical protein glysoja_024692 [Glycine soja] >KRH24913.1 hypothetical protein GLYMA_12G070900v4 [Glycine max])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 47  LCFLCNCLCLLLLLPLLNTCKWARNHTLNFLLLFDTPLSIF----LATTLLALMVSLLGM 106
           +CFLCNCLCLLLLLPLL+TCKW  NHTLNFLLLF+   S+F    L  + L +++++  +
Sbjct: 1   MCFLCNCLCLLLLLPLLSTCKWGWNHTLNFLLLFNIYSSLFFSYLLKKSCLGILLNMTFL 60

Query: 107 FLAILP 109
           F ++ P
Sbjct: 61  FFSVHP 66

The following BLAST results are available for this feature:
BLAST of CmoCh02G008810 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G008810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
K7LTG37.2e-0754.55Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G070900 PE=4 SV=1[more]
A0A0B2P9607.2e-0754.55Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_024692 PE=4 SV=1[more]
BLAST of CmoCh02G008810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG4979781.11.5e-0654.55hypothetical protein JHK85_033739 [Glycine max] >KHN05726.1 hypothetical protein... [more]
BLAST of CmoCh02G008810 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G008810.1CmoCh02G008810.1mRNA