CmoCh02G007610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G007610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Thylakoid soluble phosphoprotein TSP
Location	Cmo_Chr02: 4762505 .. 4762792 (+)
RNA-Seq Expression	CmoCh02G007610
Synteny	CmoCh02G007610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAGGCAAGAAGGAAAAGGGTATTCTGGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACTGACCCTGTTCTTCAAAAGGTTGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGCGTCTTCGGCGGTCTCTTTGCCAAGAAAGACTAA

mRNA sequence

ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAGGCAAGAAGGAAAAGGGTATTCTGGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACTGACCCTGTTCTTCAAAAGGTTGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGCGTCTTCGGCGGTCTCTTTGCCAAGAAAGACTAA

Coding sequence (CDS)

ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAGGCAAGAAGGAAAAGGGTATTCTGGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACTGACCCTGTTCTTCAAAAGGTTGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGCGTCTTCGGCGGTCTCTTTGCCAAGAAAGACTAA

Protein sequence

MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD

Homology

[Close]

BLAST of CmoCh02G007610 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.3e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 96
          GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
Sbjct: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 95

[Close]

BLAST of CmoCh02G007610 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.3e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 96
          GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
Sbjct: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 95

[Close]

BLAST of CmoCh02G007610 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 96
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of CmoCh02G007610 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 96
          G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CmoCh02G007610 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 96
          G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CmoCh02G007610 vs. NCBI nr
Match: XP_022947653.1 (uncharacterized protein LOC111451452 [Cucurbita moschata] >XP_023007425.1 uncharacterized protein LOC111499927 [Cucurbita maxima] >KAG6605422.1 hypothetical protein SDJN03_02739, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035371.1 hypothetical protein SDJN02_02167, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 96
          GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
Sbjct: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 95

[Close]

BLAST of CmoCh02G007610 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 9.5e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASLSFAFSPAAGRVFAATAAKGAGE KKEKGILDWILGGMEKDQLLETDPVLQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 96
          GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
Sbjct: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 95

[Close]

BLAST of CmoCh02G007610 vs. NCBI nr
Match: KAG7010512.1 (hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G +E+DQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD 60

Query: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 96
             +N GTV GG+KNSVQVPPKKNG FGGLFAK+D
Sbjct: 61 ---SNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD 92

[Close]

BLAST of CmoCh02G007610 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 5.8e-32
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 96
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of CmoCh02G007610 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 9.9e-32
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 96
          G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CmoCh02G007610 vs. TAIR 10
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGK 60
          ++SL  +F+PA  RV+A +   G+G  K+EK  +D++LG M K DQ  ET+P+L+KV+ K
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61

Query: 61 NGGANNG-GTVRGGKKNS-VQVPPKKNGVFGGL 91
           G    G GTVRGGK ++   VP K  G FGGL
Sbjct: 62 EGTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGL 94

The following BLAST results are available for this feature:

BLAST of CmoCh02G007610 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G007610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L2X7	9.3e-44	100.00	uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927...	[more]
A0A6J1G777	9.3e-44	100.00	uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]
A0A0A0KC59	2.8e-32	81.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1	[more]
A0A5A7V5S9	4.8e-32	82.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKK5	4.8e-32	82.47	uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=...	[more]

BLAST of CmoCh02G007610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947653.1	1.9e-43	100.00	uncharacterized protein LOC111451452 [Cucurbita moschata] >XP_023007425.1 unchar...	[more]
XP_023532336.1	9.5e-43	98.95	uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]	[more]
KAG7010512.1	2.6e-32	81.05	hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004143212.1	5.8e-32	81.44	uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical ...	[more]
XP_008464052.1	9.9e-32	82.47	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 unc...	[more]

BLAST of CmoCh02G007610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47070.1	1.4e-12	47.31	LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..93 e-value: 8.1E-21 score: 74.5
IPR021584	Thylakoid soluble phosphoprotein TSP9	PANTHER	PTHR36370	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..85
None	No IPR available	PANTHER	PTHR36370:SF1	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..95
IPR037244	Thylakoid soluble phosphoprotein TSP9 superfamily	SUPERFAMILY	144256	TSP9-like	coord: 20..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G007610.1	CmoCh02G007610.1	mRNA