CmoCh02G007260 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G007260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein
Location	Cmo_Chr02: 4587924 .. 4588403 (+)
RNA-Seq Expression	CmoCh02G007260
Synteny	CmoCh02G007260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGACGACCCTCACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCCGTGAACAGTATGGTATATGAAGCGAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCCGCGGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCACCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA

mRNA sequence

ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGACGACCCTCACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCCGTGAACAGTATGGTATATGAAGCGAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCCGCGGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCACCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA

Coding sequence (CDS)

ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGACGACCCTCACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCCGTGAACAGTATGGTATATGAAGCGAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCCGCGGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCACCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA

Protein sequence

MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS

Homology

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BLAST of CmoCh02G007260 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-51
Identity = 100/137 (72.99%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRP 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHK+FGASNVSKMLQELP+ QR 
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASF 121
           DAVNS+V+EA+AR+RDPVYGCVGAI++LQNQVS+L+MQLA AQAEIL  QMQ +    S 
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122

Query: 122 PMTQMNQYDQNLVFLSN 139
                   D   + L+N
Sbjct: 123 HQVLELDQDHKALLLNN 139

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BLAST of CmoCh02G007260 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-40
Identity = 76/110 (69.09%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP D+P KFA VH++FGASNV+KMLQELP+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQ 115
           +SMVYEA+AR+RDPVYGCVGAI+ LQ Q+  L+ QLA AQAE++  +++Q
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

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BLAST of CmoCh02G007260 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 8.5e-39
Identity = 84/153 (54.90%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H++FGASN+ K LQELP  QR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPA---SFP 125
           SMVYEA ARMRDPVYGC GAI  LQ QVS L+ QLA  Q E++  Q+Q+ +      +  
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNME 173

Query: 126 MTQMNQYDQNLVFLSNADSFNSVD---GSPEVE 153
            T+++  +Q    +S   SF S D    SP+ E
Sbjct: 174 QTKLSVQEQGQQKMSFESSFESGDEFISSPDEE 206

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BLAST of CmoCh02G007260 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.5e-38
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K LQELP  QR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQ-QAAPASFPMT 125
           SMVYEA AR+RDPVYGC GAI  LQ QVS L+ QLA AQ E+++ Q Q+       + M 
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMD 151

Query: 126 QMNQYDQ-NLVFLSN 139
           Q  + +Q N+ F SN
Sbjct: 152 QQQKQEQDNMSFESN 166

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BLAST of CmoCh02G007260 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-37
Identity = 74/115 (64.35%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CK LRR+C   CIFAPYFPP++PHKFA VHKIFGASNV+K+L EL   QR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPA 120
           NS+ YEA AR+RDPVYGCVGAI++LQ QV RL+ +L AA A++  + +   AA A
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGA 123

[Close]

BLAST of CmoCh02G007260 vs. ExPASy TrEMBL
Match: A0A6J1G7F7 (LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451558 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.2e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CmoCh02G007260 vs. ExPASy TrEMBL
Match: A0A6J1L5Y7 (LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111499469 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.6e-83
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDP+KFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAA AS
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASAS 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CmoCh02G007260 vs. ExPASy TrEMBL
Match: A0A1S3CKM4 (LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 118/161 (73.29%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VSRLE+QL AAQAEIL+ QM+QQ    +
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120

Query: 121 FP--MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FP   TQM+Q +QNL+  SN DS NS+      EDY  +W+
Sbjct: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of CmoCh02G007260 vs. ExPASy TrEMBL
Match: A0A0A0KBK5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.2e-57
Identity = 120/162 (74.07%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQM-QQQAAPA 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VS+LE+QL AA+AEIL  QM QQQ A  
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 SFPM--TQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           +FPM  TQM+Q +QNL+ LSNADS NS       +D+  LW+
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of CmoCh02G007260 vs. ExPASy TrEMBL
Match: A0A6N2C088 (LOB domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003850 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.4e-54
Identity = 111/160 (69.38%), Postives = 132/160 (82.50%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHK+FGASN+SKMLQELP+ QR
Sbjct: 1   MGTGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPIQQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
            DAV+S+VYEA+AR+RDPVYGCVGAI+FLQNQVS+L+MQLA AQAEIL  QMQQ+  P S
Sbjct: 61  ADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAQAEILCIQMQQEPVPCS 120

Query: 121 FPMTQMNQ-YDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
            P T M Q  D++   +SN ++ N+ + +  ++ Y S  S
Sbjct: 121 LPTTLMEQELDKSPYGISNNNNNNNFNNN--LQQYLSFAS 158

[Close]

BLAST of CmoCh02G007260 vs. NCBI nr
Match: XP_022947802.1 (LOB domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CmoCh02G007260 vs. NCBI nr
Match: XP_023533075.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.9 bits (821), Expect = 6.4e-84
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDP+KFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CmoCh02G007260 vs. NCBI nr
Match: KAG6605396.1 (LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035343.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPP+DP+KFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CmoCh02G007260 vs. NCBI nr
Match: XP_023006803.1 (LOB domain-containing protein 12-like [Cucurbita maxima])

HSP 1 Score: 317.8 bits (813), Expect = 5.4e-83
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDP+KFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAA AS
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASAS 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CmoCh02G007260 vs. NCBI nr
Match: XP_038902597.1 (LOB domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 123/159 (77.36%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60
           M  GSSPCASCKLLRRRCAKDCIFAPYFPPDDP KFAIVHKIFGASNVSKMLQE+ ++QR
Sbjct: 1   MRIGSSPCASCKLLRRRCAKDCIFAPYFPPDDPLKFAIVHKIFGASNVSKMLQEVSVEQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
            DAVNSMVYEASARMRDPVYGCVG I+FLQN+VSRLE+QL AAQAEIL+ QMQQQ AP +
Sbjct: 61  TDAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEIQLGAAQAEILTLQMQQQQAPMT 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
              TQM+Q DQNLV  SN DS NS     E+EDY  LW+
Sbjct: 121 -TTTQMDQDDQNLVIFSNVDSSNSFHTFQEMEDYYPLWT 158

[Close]

BLAST of CmoCh02G007260 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-52
Identity = 100/137 (72.99%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRP 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHK+FGASNVSKMLQELP+ QR 
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASF 121
           DAVNS+V+EA+AR+RDPVYGCVGAI++LQNQVS+L+MQLA AQAEIL  QMQ +    S 
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122

Query: 122 PMTQMNQYDQNLVFLSN 139
                   D   + L+N
Sbjct: 123 HQVLELDQDHKALLLNN 139

[Close]

BLAST of CmoCh02G007260 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-41
Identity = 76/110 (69.09%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP D+P KFA VH++FGASNV+KMLQELP+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQ 115
           +SMVYEA+AR+RDPVYGCVGAI+ LQ Q+  L+ QLA AQAE++  +++Q
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

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BLAST of CmoCh02G007260 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 161.4 bits (407), Expect = 6.0e-40
Identity = 84/153 (54.90%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H++FGASN+ K LQELP  QR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPA---SFP 125
           SMVYEA ARMRDPVYGC GAI  LQ QVS L+ QLA  Q E++  Q+Q+ +      +  
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNME 173

Query: 126 MTQMNQYDQNLVFLSNADSFNSVD---GSPEVE 153
            T+++  +Q    +S   SF S D    SP+ E
Sbjct: 174 QTKLSVQEQGQQKMSFESSFESGDEFISSPDEE 206

[Close]

BLAST of CmoCh02G007260 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K LQELP  QR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQ-QAAPASFPMT 125
           SMVYEA AR+RDPVYGC GAI  LQ QVS L+ QLA AQ E+++ Q Q+       + M 
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMD 151

Query: 126 QMNQYDQ-NLVFLSN 139
           Q  + +Q N+ F SN
Sbjct: 152 QQQKQEQDNMSFESN 166

[Close]

BLAST of CmoCh02G007260 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-38
Identity = 74/115 (64.35%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CK LRR+C   CIFAPYFPP++PHKFA VHKIFGASNV+K+L EL   QR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPA 120
           NS+ YEA AR+RDPVYGCVGAI++LQ QV RL+ +L AA A++  + +   AA A
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGA 123

The following BLAST results are available for this feature:

BLAST of CmoCh02G007260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBW3	1.5e-51	72.99	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	2.6e-40	69.09	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SK08	8.5e-39	54.90	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9LQR0	2.5e-38	60.00	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9FML4	2.7e-37	64.35	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]

BLAST of CmoCh02G007260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7F7	6.2e-85	100.00	LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451...	[more]
A0A6J1L5Y7	2.6e-83	98.74	LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC11149946...	[more]
A0A1S3CKM4	1.0e-58	73.29	LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE...	[more]
A0A0A0KBK5	4.2e-57	74.07	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV...	[more]
A0A6N2C088	4.4e-54	69.38	LOB domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003850 PE=3 S...	[more]

BLAST of CmoCh02G007260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947802.1	1.3e-84	100.00	LOB domain-containing protein 12-like [Cucurbita moschata]	[more]
XP_023533075.1	6.4e-84	99.37	LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo]	[more]
KAG6605396.1	2.4e-83	98.74	LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023006803.1	5.4e-83	98.74	LOB domain-containing protein 12-like [Cucurbita maxima]	[more]
XP_038902597.1	1.4e-59	77.36	LOB domain-containing protein 12 [Benincasa hispida]	[more]

BLAST of CmoCh02G007260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30130.1	1.1e-52	72.99	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	1.9e-41	69.09	LOB domain-containing protein 4	[more]
AT2G28500.1	6.0e-40	54.90	LOB domain-containing protein 11	[more]
AT1G07900.1	1.8e-39	60.00	LOB domain-containing protein 1	[more]
AT5G63090.2	1.9e-38	64.35	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..113
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..125
None	No IPR available	PANTHER	PTHR31301:SF97	LOB DOMAIN-CONTAINING PROTEIN 12-LIKE	coord: 1..125
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 7..104 e-value: 6.3E-41 score: 139.0
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 6..107 score: 26.926933

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G007260.1	CmoCh02G007260.1	mRNA