CmoCh02G005530 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCAACGGCATCGTTTTGCTTAGATCCATTTCGATTGCCTTCTTCTTAATCATAAGGTCTCTCTTCTCCAACAAACTCCTTTCATTACCATCTTCAATCTCCCTTCCACCATTACTACACAACTCCATCCATATCCTCAACACCTCTTTCGAGATCGGACCGATTTCCTCACGGATAATCTCTTCCACACGCCCCGATTCGCTCTCCTCACACTTCACACTCACTAGAATTCCGGTCGACGAAACAACTTTTCGAAAGAAGAGCGACGACGAGAAGTACGGGCTTACTTCCGGCACGCTGTCGAGTCGGCGTCGATACTTCTCGAGCTCAGTTTCCTCGTAGAAAGTGGTGAGGTAGTCGGGATGGAGGACGATATCGACTCGAGGGATCAAATCGAGGAAGAAGATTAGAAAAGTAGGGCTGCATTGAACTAACTCGAATTGGAAATGAGGAATGTCGTTTGTGGTTTTCAGGTAGCCGGCGATGTTGGTTATGTTGAACGCGCCGCCGTGTGGTTGCTTTAAGTGTAACCAACTTGCAATCATGAAATCAATCTGAAATTCCGAGAAAGTTGGAACAATTTAATTTTTTTAAAAAAAATTAAATTACAACCAAAAGAAAGTTACCGGCGACGGTGGAAGGGCAGATCGGATGAGGAGAGTGCCCTGTGAAGTGCCGGGTTGGTTCTGATAATACTCTACATCCGACGGAACCGTCGACGGAAGTAGATGCTCTCCGACCCCATCATCGACGGCTTGGATTAAATCCACCATCAGATCTCTGTGCGCAGCCGTCAGATGCGGAAACTCCATCAGCTTCGACGCCGGCCGACCACTCCCCATCGCCGCGGACGGCAGCTCCGCCTTGATTACTTGCCGTGTTCTTCCTCTACTTCCTCCTTGGAAACGCAATGGTGGAAGACAATAACAAGCTCTTGGGACCAGCGTCAAGGTTGTCAAAGCCATTTGTGGCCTCTCATTGCTTCATTATCTTTATTTATTTATTTTATTTTTTATTCATAAAAAAATATATTTTAATCATTTTCATTTTCAAATTATTTATAAAGAGGAATGAAACACATTTATAATTATTTTTTAAATTTATTTATACAATTTTATTAAAATCTTTTTTTTTAAGCATAGTTTTTAATATTAAATATTAAAAATAAAAAAATATATACTAAAATTTTCATTTTAATTAGAATTTAGTTATTCACCACATACGAGGATCCATGGATCCATGCCTATGGGTGAGTAGTTATTCACCATTTTAATTAGAATTTAGTTATTCACCGTATAGGAGAATTAATTTAAAATATTTTAATATTGACGTAACAAAAGTAAAGTAGTTAATAATTAATTATTTAATATTAGCTAATGTAATAATTATTTTTTAAATAATTTGTTTATATTCGTAAATACAATTATTTGATTATATTATTCATTTTTTTGGAATTTTTTTCTAGACGCAATGAACAAAATTTTAAACTAAACAGAGTTGTGGGGCCCGAAGAAACCTAACTGAGCAGATATTTTCGTTATCCCTAATCCAATCCGAGCTATCCCATCTTCGACACGGATGAAAATAAGATGCCAAACATGGCGTTGATGGTTTATCCATCTGCAAAAGCTTTCAGTCTTCCGCCGCCGGTGGAATCCCGTTTCAGAGAATTAGTGATAAGGAACGCAGCGTCGAACATGGCGGAGAATGTGCCGATCCGGCCGGGATCGTCGTCGAAGCTGAAGGAGTTTCCACATCTGTCGGCTTCTCATAGAGCTCTGATGACTGATCTCGTCGGCGCCACTGAATCTCGACTCGAAGATCGTCTTCTTCCTTGCACTCTTCCTCCTGATGTTGAATACTTCCAGAATCAGAACGGGACTTCGCAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTGTATGCGTCTCTATGTCTCTGTCTCTTAAGAAATTTAGATAATCAAACTGTTTCGAGTGTACTCTGATCTGCTCCCAATTTTAGCGTTCCGGAATTGAGGATTTAAAATTTAAATTTCTTTCATAGTCTGCAGATCGATTAGATAGAAAATTGATTGTTTATGCATCTGTTAAATACTTTTTGAATCCAAATTTATCAAATCTCCAACGCTTAGCATGTTAGATACCACGGATTATTGAGTTATTACATTAATCAAAATCTCTAGCGGTTTGTAATTGTTTTGTTAAGCATTTGAACTAAAATTCTAATGTAAGTGTTTCCAACAAATCAAGAGTATGAGATAATTGTGAAAATTTTGTAGCAGCAGATCCAAATTCAAACTAACAAATTGGTAATGAGATTGTGTTCGTTATTTAATCTATGTTTCTTAACTTTTGTGTTAGATTAATTTCATATTGGGAAGTTGGTTGCATAGCCAGCTACCAACAGGAGCATCATTAAACATTGCAAGCCTTTCTGCCTACTTGAGGCCATCAACTGATGCTCCAAACTTCCTCATAGAATTCATTCAAAGCTCTCCAACCTCCCTCATTCTCATTCTGGATCTACCTCCCAGAAAGGATCTGGTGCTCAATCCAGACTACCTTCAATTGTTCTATGAAGATACAGGATTAGACAAATACCGTAAAGCAATCGAAGAACTCCCTGAAGTACGACCATATGCCATGTCCTCTCTCTTCTTCCGCTCCTTAGTTTCTCCAACTTCCATAATTGTCCGTGTCGATACGGAATCGGGAGGACCCGAACGCATGGAGGAGATTATAGCGAACCATGTCGGTCCCGTTGCAAGAGATGTGATTCGGGTGTGGTTGGATGAATGTGCTTGCAAGGAGAGAGGGGTTGGAGAGATGGAAAGAGGGAACATTGAGAAGAGGGATGAGTTGGTTAAGAAGAAAACCATTGATATAGACTTGGGTTCTAGTTTGCCAAGATTGTTTGGCCAGGAAATAGCAGATAGAGTAGTGGCAGCCATCCAACAAATCTTTGAAGCATGAAATGGTTTTGCTTTGCTTGTTGGTTGTAAATGTATAATGTATTATTTAGATGCTTAATGAAGTTAATTTCATTTATGATTTTAGCGTTGAACGGATAAAAAGGTTAATAAGACTAAGTA GCAACGGCATCGTTTTGCTTAGATCCATTTCGATTGCCTTCTTCTTAATCATAAGGTCTCTCTTCTCCAACAAACTCCTTTCATTACCATCTTCAATCTCCCTTCCACCATTACTACACAACTCCATCCATATCCTCAACACCTCTTTCGAGATCGGACCGATTTCCTCACGGATAATCTCTTCCACACGCCCCGATTCGCTCTCCTCACACTTCACACTCACTAGAATTCCGGTCGACGAAACAACTTTTCGAAAGAAGAGCGACGACGAGAAGTACGGGCTTACTTCCGGCACGCTGTCGAGTCGGCGTCGATACTTCTCGAGCTCAGTTTCCTCGTAGAAAGTGGTGAGGTAGTCGGGATGGAGGACGATATCGACTCGAGGGATCAAATCGAGGAAGAAGATTAGAAAAGTAGGGCTGCATTGAACTAACTCGAATTGGAAATGAGGAATGTCGTTTGTGGTTTTCAGGTAGCCGGCGATGTTGGTTATGTTGAACGCGCCGCCGTGTGGTTGCTTTAAGTGTAACCAACTTGCAATCATGAAATCAATCTGAAATTCCGAGAAAGTTGGAACAATTTAATTTTTTTAAAAAAAATTAAATTACAACCAAAAGAAAGTTACCGGCGACGGTGGAAGGGCAGATCGGATGAGGAGAGTGCCCTGTGAAGTGCCGGGTTGGTTCTGATAATACTCTACATCCGACGGAACCGTCGACGGAAGTAGATGCTCTCCGACCCCATCATCGACGGCTTGGATTAAATCCACCATCAGATCTCTGTGCGCAGCCGTCAGATGCGGAAACTCCATCAGCTTCGACGCCGGCCGACCACTCCCCATCGCCGCGGACGGCAGCTCCGCCTTGATTACTTGCCGTGTTCTTCCTCTACTTCCTCCTTGGAAACGCAATGGTGGAAGACAATAACAAGCTCTTGGGACCAGCGTCAAGAGTTGTGGGGCCCGAAGAAACCTAACTGAGCAGATATTTTCGTTATCCCTAATCCAATCCGAGCTATCCCATCTTCGACACGGATGAAAATAAGATGCCAAACATGGCGTTGATGGTTTATCCATCTGCAAAAGCTTTCAGTCTTCCGCCGCCGGTGGAATCCCGTTTCAGAGAATTAGTGATAAGGAACGCAGCGTCGAACATGGCGGAGAATGTGCCGATCCGGCCGGGATCGTCGTCGAAGCTGAAGGAGTTTCCACATCTGTCGGCTTCTCATAGAGCTCTGATGACTGATCTCGTCGGCGCCACTGAATCTCGACTCGAAGATCGTCTTCTTCCTTGCACTCTTCCTCCTGATGTTGAATACTTCCAGAATCAGAACGGGACTTCGCAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTATTAATTTCATATTGGGAAGTTGGTTGCATAGCCAGCTACCAACAGGAGCATCATTAAACATTGCAAGCCTTTCTGCCTACTTGAGGCCATCAACTGATGCTCCAAACTTCCTCATAGAATTCATTCAAAGCTCTCCAACCTCCCTCATTCTCATTCTGGATCTACCTCCCAGAAAGGATCTGGTGCTCAATCCAGACTACCTTCAATTGTTCTATGAAGATACAGGATTAGACAAATACCGTAAAGCAATCGAAGAACTCCCTGAAGTACGACCATATGCCATGTCCTCTCTCTTCTTCCGCTCCTTAGTTTCTCCAACTTCCATAATTGTCCGTGTCGATACGGAATCGGGAGGACCCGAACGCATGGAGGAGATTATAGCGAACCATGTCGGTCCCGTTGCAAGAGATGTGATTCGGGTGTGGTTGGATGAATGTGCTTGCAAGGAGAGAGGGGTTGGAGAGATGGAAAGAGGGAACATTGAGAAGAGGGATGAGTTGGTTAAGAAGAAAACCATTGATATAGACTTGGGTTCTAGTTTGCCAAGATTGTTTGGCCAGGAAATAGCAGATAGAGTAGTGGCAGCCATCCAACAAATCTTTGAAGCATGAAATGGTTTTGCTTTGCTTGTTGGTTGTAAATGTATAATGTATTATTTAGATGCTTAATGAAGTTAATTTCATTTATGATTTTAGCGTTGAACGGATAAAAAGGTTAATAAGACTAAGTA ATGCCAAACATGGCGTTGATGGTTTATCCATCTGCAAAAGCTTTCAGTCTTCCGCCGCCGGTGGAATCCCGTTTCAGAGAATTAGTGATAAGGAACGCAGCGTCGAACATGGCGGAGAATGTGCCGATCCGGCCGGGATCGTCGTCGAAGCTGAAGGAGTTTCCACATCTGTCGGCTTCTCATAGAGCTCTGATGACTGATCTCGTCGGCGCCACTGAATCTCGACTCGAAGATCGTCTTCTTCCTTGCACTCTTCCTCCTGATGTTGAATACTTCCAGAATCAGAACGGGACTTCGCAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTATTAATTTCATATTGGGAAGTTGGTTGCATAGCCAGCTACCAACAGGAGCATCATTAAACATTGCAAGCCTTTCTGCCTACTTGAGGCCATCAACTGATGCTCCAAACTTCCTCATAGAATTCATTCAAAGCTCTCCAACCTCCCTCATTCTCATTCTGGATCTACCTCCCAGAAAGGATCTGGTGCTCAATCCAGACTACCTTCAATTGTTCTATGAAGATACAGGATTAGACAAATACCGTAAAGCAATCGAAGAACTCCCTGAAGTACGACCATATGCCATGTCCTCTCTCTTCTTCCGCTCCTTAGTTTCTCCAACTTCCATAATTGTCCGTGTCGATACGGAATCGGGAGGACCCGAACGCATGGAGGAGATTATAGCGAACCATGTCGGTCCCGTTGCAAGAGATGTGATTCGGGTGTGGTTGGATGAATGTGCTTGCAAGGAGAGAGGGGTTGGAGAGATGGAAAGAGGGAACATTGAGAAGAGGGATGAGTTGGTTAAGAAGAAAACCATTGATATAGACTTGGGTTCTAGTTTGCCAAGATTGTTTGGCCAGGAAATAGCAGATAGAGTAGTGGCAGCCATCCAACAAATCTTTGAAGCATGA MPNMALMVYPSAKAFSLPPPVESRFRELVIRNAASNMAENVPIRPGSSSKLKEFPHLSASHRALMTDLVGATESRLEDRLLPCTLPPDVEYFQNQNGTSQGALLIRSGSPDSSINFILGSWLHSQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDLVLNPDYLQLFYEDTGLDKYRKAIEELPEVRPYAMSSLFFRSLVSPTSIIVRVDTESGGPERMEEIIANHVGPVARDVIRVWLDECACKERGVGEMERGNIEKRDELVKKKTIDIDLGSSLPRLFGQEIADRVVAAIQQIFEA Homology
BLAST of CmoCh02G005530 vs. ExPASy Swiss-Prot
Match: Q8LDU4 (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RCCR PE=1 SV=2) HSP 1 Score: 285.4 bits (729), Expect = 7.8e-76 Identity = 135/268 (50.37%), Postives = 194/268 (72.39%), Query Frame = 0
BLAST of CmoCh02G005530 vs. ExPASy Swiss-Prot
Match: Q338P6 (Red chlorophyll catabolite reductase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RCCR1 PE=2 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.0e-63 Identity = 121/260 (46.54%), Postives = 180/260 (69.23%), Query Frame = 0
BLAST of CmoCh02G005530 vs. ExPASy Swiss-Prot
Match: Q9MTQ6 (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare OX=4513 GN=rccR PE=1 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.2e-49 Identity = 94/201 (46.77%), Postives = 142/201 (70.65%), Query Frame = 0
BLAST of CmoCh02G005530 vs. ExPASy TrEMBL
Match: A0A6J1G868 (red chlorophyll catabolite reductase OS=Cucurbita moschata OX=3662 GN=LOC111451765 PE=4 SV=1) HSP 1 Score: 622.9 bits (1605), Expect = 7.6e-175 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
BLAST of CmoCh02G005530 vs. ExPASy TrEMBL
Match: A0A6J1L1Y1 (red chlorophyll catabolite reductase-like OS=Cucurbita maxima OX=3661 GN=LOC111499663 PE=4 SV=1) HSP 1 Score: 602.1 bits (1551), Expect = 1.4e-168 Identity = 304/316 (96.20%), Postives = 308/316 (97.47%), Query Frame = 0
BLAST of CmoCh02G005530 vs. ExPASy TrEMBL
Match: D1MWY7 (Red chlorophyll catabolite reductase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitRCCR PE=2 SV=1) HSP 1 Score: 510.0 bits (1312), Expect = 7.1e-141 Identity = 263/319 (82.45%), Postives = 282/319 (88.40%), Query Frame = 0
BLAST of CmoCh02G005530 vs. ExPASy TrEMBL
Match: A0A0A0LJH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285300 PE=4 SV=1) HSP 1 Score: 503.8 bits (1296), Expect = 5.1e-139 Identity = 261/318 (82.08%), Postives = 278/318 (87.42%), Query Frame = 0
BLAST of CmoCh02G005530 vs. ExPASy TrEMBL
Match: A0A1S3C745 (red chlorophyll catabolite reductase-like OS=Cucumis melo OX=3656 GN=LOC103497431 PE=4 SV=1) HSP 1 Score: 496.1 bits (1276), Expect = 1.1e-136 Identity = 258/318 (81.13%), Postives = 277/318 (87.11%), Query Frame = 0
BLAST of CmoCh02G005530 vs. NCBI nr
Match: XP_022948072.1 (red chlorophyll catabolite reductase [Cucurbita moschata]) HSP 1 Score: 622.9 bits (1605), Expect = 1.6e-174 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
BLAST of CmoCh02G005530 vs. NCBI nr
Match: XP_023521266.1 (red chlorophyll catabolite reductase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 619.0 bits (1595), Expect = 2.3e-173 Identity = 314/316 (99.37%), Postives = 314/316 (99.37%), Query Frame = 0
BLAST of CmoCh02G005530 vs. NCBI nr
Match: XP_023534657.1 (red chlorophyll catabolite reductase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 617.8 bits (1592), Expect = 5.0e-173 Identity = 313/316 (99.05%), Postives = 314/316 (99.37%), Query Frame = 0
BLAST of CmoCh02G005530 vs. NCBI nr
Match: KAG6605235.1 (Red chlorophyll catabolite reductase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 612.8 bits (1579), Expect = 1.6e-171 Identity = 311/316 (98.42%), Postives = 312/316 (98.73%), Query Frame = 0
BLAST of CmoCh02G005530 vs. NCBI nr
Match: XP_023007060.1 (red chlorophyll catabolite reductase-like [Cucurbita maxima]) HSP 1 Score: 602.1 bits (1551), Expect = 2.9e-168 Identity = 304/316 (96.20%), Postives = 308/316 (97.47%), Query Frame = 0
BLAST of CmoCh02G005530 vs. TAIR 10
Match: AT4G37000.1 (accelerated cell death 2 (ACD2) ) HSP 1 Score: 285.4 bits (729), Expect = 5.5e-77 Identity = 135/268 (50.37%), Postives = 194/268 (72.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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