CmoCh02G004760 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G004760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionformin-2-like
LocationCmo_Chr02: 2581237 .. 2581556 (+)
RNA-Seq ExpressionCmoCh02G004760
SyntenyCmoCh02G004760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACGTGGTACATGAAGAAACAAGAACCAACGCAAGCTTCTTCTACTTAGCGCCCACAAATATTGCCCGAACTCTCATTATTGGGCTTTTTCTAAACCAGATACCGAAGATTTCTTGCCCGAATCATCTATTGGAGCTATCAAGCAGTCTAGTTTAGCCTTTGGTGAGGGTCACAACTTCAGTGATGCCAACACTCTTGGTGGTATCAAGGACTCCAGCTCGAGTTCCAACGTTGGCCATAACCTAGTCGATGCCGGTACTCTCGGTAATGTCAAAGAATCTAGCCCCATCTCTGGCAGCGGTGGCCGTCATTAA

mRNA sequence

ATGAAAAACGTGTCTAGTTTAGCCTTTGGTGAGGGTCACAACTTCAGTGATGCCAACACTCTTGGTGGTATCAAGGACTCCAGCTCGAGTTCCAACGTTGGCCATAACCTAGTCGATGCCGGTACTCTCGGTAATGTCAAAGAATCTAGCCCCATCTCTGGCAGCGGTGGCCGTCATTAA

Coding sequence (CDS)

ATGAAAAACGTGTCTAGTTTAGCCTTTGGTGAGGGTCACAACTTCAGTGATGCCAACACTCTTGGTGGTATCAAGGACTCCAGCTCGAGTTCCAACGTTGGCCATAACCTAGTCGATGCCGGTACTCTCGGTAATGTCAAAGAATCTAGCCCCATCTCTGGCAGCGGTGGCCGTCATTAA

Protein sequence

MKNVSSLAFGEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSGGRH
Homology
BLAST of CmoCh02G004760 vs. ExPASy TrEMBL
Match: A0A6J0ZIJ1 (formin-2-like OS=Herrania umbratica OX=108875 GN=LOC110409609 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 10  GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSG 57
           GEGH F+D+  LGGIKDS  S   GH L+D+ TLG +K+S P  G G
Sbjct: 110 GEGHKFTDSLPLGGIKDSGPSPGEGHKLIDSSTLGGIKDSGPSPGQG 156

BLAST of CmoCh02G004760 vs. ExPASy TrEMBL
Match: A0A061DGM9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000701 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 10  GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSGGR 59
           GEGH   D++TLGGIKDS  S   GH L+D+ TLG +K+S P  G G +
Sbjct: 110 GEGHKLIDSSTLGGIKDSGPSPGQGHKLIDSSTLGGIKDSGPSPGVGNK 158

BLAST of CmoCh02G004760 vs. ExPASy TrEMBL
Match: A0A438KPM2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_000905 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 0

Query: 10  GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSGGRH 60
           G GH F++A TLGGIKDS  S   GH   +AGTLG +K+S P  G G ++
Sbjct: 61  GNGHKFTNAGTLGGIKDSGPSPGNGHKFTNAGTLGGIKDSGPSPGEGHKY 110

BLAST of CmoCh02G004760 vs. ExPASy TrEMBL
Match: A5AV37 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011346 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-04
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 10  GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSG 57
           G GH F++A TLGGIKDS  S   GH   +AGTLG +K+S P  G G
Sbjct: 61  GNGHKFTNAGTLGGIKDSGPSPGNGHKFTNAGTLGGIKDSGPNPGEG 107

BLAST of CmoCh02G004760 vs. ExPASy TrEMBL
Match: A0A1U7ZIK4 (uncharacterized protein LOC104590531 OS=Nelumbo nucifera OX=4432 GN=LOC104590531 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-04
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 10  GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSG 57
           G GH+ SDA TLGGIKDS  S   GH+  DA TLG VK+S P  G G
Sbjct: 196 GAGHSVSDAQTLGGIKDSGPSPGAGHSFSDAQTLGGVKDSGPSPGIG 242

BLAST of CmoCh02G004760 vs. NCBI nr
Match: KAG8367099.1 (hypothetical protein BUALT_Bualt16G0037400 [Buddleja alternifolia])

HSP 1 Score: 56.6 bits (135), Expect = 8.3e-05
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 10 GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSGGRH 60
          GEGH F +A+TLGGIKDSS S   GHN V+A TLG +K S P  G G ++
Sbjct: 43 GEGHKFINADTLGGIKDSSPSPGDGHNYVNAKTLGGIKNSGPSPGDGHKY 92

BLAST of CmoCh02G004760 vs. NCBI nr
Match: KAF8017354.1 (hypothetical protein BT93_H2522 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 10  GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSG 57
           GEGH F+D+ TLGGIKDS  S   GH   D+ TLG +K+S P  G G
Sbjct: 84  GEGHKFTDSKTLGGIKDSGPSPGEGHKFTDSKTLGGIKDSGPSPGEG 130

BLAST of CmoCh02G004760 vs. NCBI nr
Match: EOX91559.1 (Uncharacterized protein TCM_000701 [Theobroma cacao])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 10  GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSGGR 59
           GEGH   D++TLGGIKDS  S   GH L+D+ TLG +K+S P  G G +
Sbjct: 110 GEGHKLIDSSTLGGIKDSGPSPGQGHKLIDSSTLGGIKDSGPSPGVGNK 158

BLAST of CmoCh02G004760 vs. NCBI nr
Match: XP_007047402.2 (PREDICTED: uncharacterized protein LOC18611205 [Theobroma cacao])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0

Query: 1   MKNVSSLAFGEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSG 57
           +KN    + GEGH  +D+  LGGIKDS  S   GH L+D+ TLG +K+S P  G G
Sbjct: 79  IKNSGPSSGGEGHKLTDSLPLGGIKDSGPSPGEGHKLIDSSTLGGIKDSGPSPGQG 134

BLAST of CmoCh02G004760 vs. NCBI nr
Match: XP_021274691.1 (formin-2-like [Herrania umbratica])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 10  GEGHNFSDANTLGGIKDSSSSSNVGHNLVDAGTLGNVKESSPISGSG 57
           GEGH F+D+  LGGIKDS  S   GH L+D+ TLG +K+S P  G G
Sbjct: 110 GEGHKFTDSLPLGGIKDSGPSPGEGHKLIDSSTLGGIKDSGPSPGQG 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J0ZIJ11.5e-0455.32formin-2-like OS=Herrania umbratica OX=108875 GN=LOC110409609 PE=4 SV=1[more]
A0A061DGM91.5e-0453.06Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000701 PE=4 SV=1[more]
A0A438KPM22.0e-0452.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_000905 PE=4 SV=1[more]
A5AV373.4e-0455.32Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011346 PE=4 SV=1[more]
A0A1U7ZIK43.4e-0459.57uncharacterized protein LOC104590531 OS=Nelumbo nucifera OX=4432 GN=LOC104590531... [more]
Match NameE-valueIdentityDescription
KAG8367099.18.3e-0558.00hypothetical protein BUALT_Bualt16G0037400 [Buddleja alternifolia][more]
KAF8017354.13.2e-0455.32hypothetical protein BT93_H2522 [Corymbia citriodora subsp. variegata][more]
EOX91559.13.2e-0453.06Uncharacterized protein TCM_000701 [Theobroma cacao][more]
XP_007047402.23.2e-0448.21PREDICTED: uncharacterized protein LOC18611205 [Theobroma cacao][more]
XP_021274691.13.2e-0455.32formin-2-like [Herrania umbratica][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G004760.1CmoCh02G004760.1mRNA