CmoCh02G004400 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G004400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger CCCH domain-containing protein 38 isoform X2
Location	Cmo_Chr02: 2307539 .. 2308483 (-)
RNA-Seq Expression	CmoCh02G004400
Synteny	CmoCh02G004400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTTCAGAGTCAAACTGCAGAAGGAGGATGAAAGCATCGAACATAGTAACGAACGATCAAATTAGGCAAATAACTGACCTTTCAGCTTCTCTTGCACAATATTTTGGAAATGCGCAACCATTGCCTCAATTGTATGCCTCCCTTAATACGCATACTGTGTCAGAAGCACCTTCATTCCCTTATTCGGACGCACCCATGGGTGCTTTGGGGGCAGCGATGAAGACAGGTCCTGTTATTGAATCCTCAAAGCAACACGATTCTGCTCTCTGCAATAGCTTACAGCTGAAGAAACTTGAAGTCACTAAAACACCACAGAAGAGCACTACAGAAGTGAAGGGTGAAGTACAGATACCAAATTTGCCTCTATCATCTGGTCCCTGTGGCATCTCTGCTGAAGAAACTCTTCATGGGAAGCCAACAGTTGATGGCGATGCTATCAAAGAGAAGAATGAAACTGACCCAGCAACAAATGAGGACTCTCAAAAGATTGATACGACAGAAAACGCAAATGGAAACGATGAGGTCCATGATAAGAAGAAGAGTAAGGATGAAATTTGCACTTGTGGAGTTTGTCAAGGAACTTCTAAAACCTACATGGTAGGAAGGTCATATCAGCAAAGATTTTTATAAAACCATAGTCAAGAAAGTGGTGGACAAAGTCACAGGCTCCTTGCAGGATGGTCATATTCCTCAAACGCAGGAGAAAATCGATCACTATCTTTCGTTTTCGAAATCAAAGCTCACAAAACTTGTTCAGGTAACTACAAATTTCCTTTCAATTCAGTTCTCTTGTGTTGACTTTGCATGTTATAGCATTTATACTTTGCACTGCCGGCATCTCCTCTCAAATTATCCATTTTATTTGTTTAACTCTTTTATACTTGACAGAAACGATTGTTGCATTTGTTTGAATACAATCCTTTTGTTGCACAATGGTAG

mRNA sequence

ATGGAAATTTCAGAGTCAAACTGCAGAAGGAGGATGAAAGCATCGAACATAGTAACGAACGATCAAATTAGGCAAATAACTGACCTTTCAGCTTCTCTTGCACAATATTTTGGAAATGCGCAACCATTGCCTCAATTGTATGCCTCCCTTAATACGCATACTGTGTCAGAAGCACCTTCATTCCCTTATTCGGACGCACCCATGGGTGCTTTGGGGGCAGCGATGAAGACAGGTCCTGTTATTGAATCCTCAAAGCAACACGATTCTGCTCTCTGCAATAGCTTACAGCTGAAGAAACTTGAAGTCACTAAAACACCACAGAAGAGCACTACAGAAGTGAAGGGTGAAGTACAGATACCAAATTTGCCTCTATCATCTGGTCCCTGTGGCATCTCTGCTGAAGAAACTCTTCATGGGAAGCCAACAGTTGATGGCGATGCTATCAAAGAGAAGAATGAAACTGACCCAGCAACAAATGAGGACTCTCAAAAGATTGATACGACAGAAAACGCAAATGGAAACGATGAGGTCCATGATAAGAAGAAGAGTAAGGATGAAATTTGCACTTGTGGAGTTTGTCAAGGAACTTCTAAAACCTACATGGAAGGTCATATCAGCAAAGATTTTTATAAAACCATAGTCAAGAAAGTGGTGGACAAAGTCACAGGCTCCTTGCAGGATGGTCATATTCCTCAAACGCAGGAGAAAATCGATCACTATCTTTCGTTTTCGAAATCAAAGCTCACAAAACTTGTTCAGAAACGATTGTTGCATTTGTTTGAATACAATCCTTTTGTTGCACAATGGTAG

Coding sequence (CDS)

ATGGAAATTTCAGAGTCAAACTGCAGAAGGAGGATGAAAGCATCGAACATAGTAACGAACGATCAAATTAGGCAAATAACTGACCTTTCAGCTTCTCTTGCACAATATTTTGGAAATGCGCAACCATTGCCTCAATTGTATGCCTCCCTTAATACGCATACTGTGTCAGAAGCACCTTCATTCCCTTATTCGGACGCACCCATGGGTGCTTTGGGGGCAGCGATGAAGACAGGTCCTGTTATTGAATCCTCAAAGCAACACGATTCTGCTCTCTGCAATAGCTTACAGCTGAAGAAACTTGAAGTCACTAAAACACCACAGAAGAGCACTACAGAAGTGAAGGGTGAAGTACAGATACCAAATTTGCCTCTATCATCTGGTCCCTGTGGCATCTCTGCTGAAGAAACTCTTCATGGGAAGCCAACAGTTGATGGCGATGCTATCAAAGAGAAGAATGAAACTGACCCAGCAACAAATGAGGACTCTCAAAAGATTGATACGACAGAAAACGCAAATGGAAACGATGAGGTCCATGATAAGAAGAAGAGTAAGGATGAAATTTGCACTTGTGGAGTTTGTCAAGGAACTTCTAAAACCTACATGGAAGGTCATATCAGCAAAGATTTTTATAAAACCATAGTCAAGAAAGTGGTGGACAAAGTCACAGGCTCCTTGCAGGATGGTCATATTCCTCAAACGCAGGAGAAAATCGATCACTATCTTTCGTTTTCGAAATCAAAGCTCACAAAACTTGTTCAGAAACGATTGTTGCATTTGTTTGAATACAATCCTTTTGTTGCACAATGGTAG

Protein sequence

MEISESNCRRRMKASNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEETLHGKPTVDGDAIKEKNETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEICTCGVCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKIDHYLSFSKSKLTKLVQKRLLHLFEYNPFVAQW

Homology

[Close]

BLAST of CmoCh02G004400 vs. ExPASy Swiss-Prot
Match: Q9LIH5 (Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=At3g18640 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-21
Identity = 90/268 (33.58%), Postives = 124/268 (46.27%), Query Frame = 0


Query: 6   SNCRRRMKASNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLN--THTVSEAP---- 65
           S   + +   N V+ +QI QIT++SASLAQ+  N QP+PQL  +L    H+ S  P    
Sbjct: 435 STVEKPVLVQNTVSREQIDQITNISASLAQFLANGQPIPQLEQALQLPLHSESVQPNQAT 494

Query: 66  --SFPYSDAPMGALGAAMKTG----PVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEV 125
             S   S  P    G  M TG    P + +SK  +      +Q   L+  +   K T E 
Sbjct: 495 TQSNVVSSNPNQLWGLGMSTGAEGVPAVTASKISN---VEEIQEVSLDPKENGDKKTDEA 554

Query: 126 KGEVQIPNLPLSSGPCGISAEETLHGKPTVDGDAIKEKNETDPATNEDSQKIDTTENANG 185
             E                                +E  +T   TN+    +D  E+ + 
Sbjct: 555 SKE--------------------------------EEGKKTGEDTNDAENVVDEDEDGDD 614

Query: 186 NDEVHDKKKSKD-------EICTCGVCQGTSK-TYMEGHISKDFYKTIVKKVVDKVTGSL 245
           +    + KK KD       +     V +   K  + EG ++KD YK IVKKV +KVTG++
Sbjct: 615 DGSDEENKKEKDPKGMRAFKFALVEVVKELLKPAWKEGKLNKDGYKNIVKKVAEKVTGTM 667

Query: 246 QDGHIPQTQEKIDHYLSFSKSKLTKLVQ 254
           Q G++PQTQEKIDHYLS SK KLTKLVQ
Sbjct: 675 QSGNVPQTQEKIDHYLSASKPKLTKLVQ 667

[Close]

BLAST of CmoCh02G004400 vs. ExPASy Swiss-Prot
Match: Q6YYC0 (Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0135800 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-11
Identity = 53/121 (43.80%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 141 PTVDGDAIKEKNETDPATNEDSQKIDTTENANGNDEVHDKKKSKDE--------ICTCGV 200
           PTV   A+   NET PA N+  +  DT   AN + E    KKSKD              V
Sbjct: 834 PTVPAAAL-ATNETTPAENKKEEPKDTDAEANEDGE---NKKSKDSKALKMFKLALADFV 893

Query: 201 CQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKIDHYLSFSKSKLTKLV 254
                 T+ EG +S++ +KTIVKKVVDKVT +++  + PQT+EKID Y+S+S+ KL KLV
Sbjct: 894 KDALKPTWKEGQMSREVHKTIVKKVVDKVTTTVE--NTPQTKEKIDIYMSYSREKLNKLV 948

[Close]

BLAST of CmoCh02G004400 vs. ExPASy TrEMBL
Match: A0A6J1GEA9 (zinc finger CCCH domain-containing protein 38 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111453208 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.3e-108
Identity = 218/256 (85.16%), Postives = 224/256 (87.50%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 599 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 658

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 659 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 718

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 719 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 778

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 254
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 779 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 838

[Close]

BLAST of CmoCh02G004400 vs. ExPASy TrEMBL
Match: A0A6J1GEA4 (zinc finger CCCH domain-containing protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453208 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 3.0e-108
Identity = 219/264 (82.95%), Postives = 229/264 (86.74%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 599 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 658

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 659 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 718

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 719 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 778

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 255
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 779 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 838

Query: 256 DHYLSFSKSKLTKLVQKRLLHLFE 262
           DHYLSFSKSKLTKLVQ  ++H+ +
Sbjct: 839 DHYLSFSKSKLTKLVQ--VMHILK 857

[Close]

BLAST of CmoCh02G004400 vs. ExPASy TrEMBL
Match: A0A6J1GDK5 (zinc finger CCCH domain-containing protein 38 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111453208 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 3.0e-108
Identity = 219/264 (82.95%), Postives = 229/264 (86.74%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 455 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 514

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 515 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 574

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 575 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 634

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 255
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 635 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 694

Query: 256 DHYLSFSKSKLTKLVQKRLLHLFE 262
           DHYLSFSKSKLTKLVQ  ++H+ +
Sbjct: 695 DHYLSFSKSKLTKLVQ--VMHILK 713

[Close]

BLAST of CmoCh02G004400 vs. ExPASy TrEMBL
Match: A0A6J1GEH4 (zinc finger CCCH domain-containing protein 38 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453208 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 3.0e-108
Identity = 219/264 (82.95%), Postives = 229/264 (86.74%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 596 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 655

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 656 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 715

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 716 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 775

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 255
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 776 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 835

Query: 256 DHYLSFSKSKLTKLVQKRLLHLFE 262
           DHYLSFSKSKLTKLVQ  ++H+ +
Sbjct: 836 DHYLSFSKSKLTKLVQ--VMHILK 854

[Close]

BLAST of CmoCh02G004400 vs. ExPASy TrEMBL
Match: A0A6J1GDJ5 (zinc finger CCCH domain-containing protein 38 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111453208 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 3.0e-108
Identity = 219/264 (82.95%), Postives = 229/264 (86.74%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 479 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 538

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 539 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 598

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 599 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 658

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 255
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 659 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 718

Query: 256 DHYLSFSKSKLTKLVQKRLLHLFE 262
           DHYLSFSKSKLTKLVQ  ++H+ +
Sbjct: 719 DHYLSFSKSKLTKLVQ--VMHILK 737

[Close]

BLAST of CmoCh02G004400 vs. NCBI nr
Match: KAG6604278.1 (Zinc finger CCCH domain-containing protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 410.2 bits (1053), Expect = 1.4e-110
Identity = 223/256 (87.11%), Postives = 227/256 (88.67%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM
Sbjct: 592 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 651

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KTGPVIESSKQHDSALCNSLQLKKLEVTKTP+KSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 652 KTGPVIESSKQHDSALCNSLQLKKLEVTKTPRKSTTEVKGEVQIPNLPLSSGPCGISAEE 711

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPTVDGDAIKEK       N+TDPATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 712 TLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 771

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 254
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 772 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 831

[Close]

BLAST of CmoCh02G004400 vs. NCBI nr
Match: XP_022949980.1 (zinc finger CCCH domain-containing protein 38 isoform X3 [Cucurbita moschata])

HSP 1 Score: 401.7 bits (1031), Expect = 4.8e-108
Identity = 218/256 (85.16%), Postives = 224/256 (87.50%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 599 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 658

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 659 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 718

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 719 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 778

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 254
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 779 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 838

[Close]

BLAST of CmoCh02G004400 vs. NCBI nr
Match: XP_022949981.1 (zinc finger CCCH domain-containing protein 38 isoform X4 [Cucurbita moschata])

HSP 1 Score: 401.4 bits (1030), Expect = 6.3e-108
Identity = 219/264 (82.95%), Postives = 229/264 (86.74%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 479 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 538

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 539 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 598

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 599 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 658

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 255
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 659 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 718

Query: 256 DHYLSFSKSKLTKLVQKRLLHLFE 262
           DHYLSFSKSKLTKLVQ  ++H+ +
Sbjct: 719 DHYLSFSKSKLTKLVQ--VMHILK 737

[Close]

BLAST of CmoCh02G004400 vs. NCBI nr
Match: XP_022949979.1 (zinc finger CCCH domain-containing protein 38 isoform X2 [Cucurbita moschata])

HSP 1 Score: 401.4 bits (1030), Expect = 6.3e-108
Identity = 219/264 (82.95%), Postives = 229/264 (86.74%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 596 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 655

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 656 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 715

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 716 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 775

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 255
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 776 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 835

Query: 256 DHYLSFSKSKLTKLVQKRLLHLFE 262
           DHYLSFSKSKLTKLVQ  ++H+ +
Sbjct: 836 DHYLSFSKSKLTKLVQ--VMHILK 854

[Close]

BLAST of CmoCh02G004400 vs. NCBI nr
Match: XP_022949982.1 (zinc finger CCCH domain-containing protein 38 isoform X5 [Cucurbita moschata])

HSP 1 Score: 401.4 bits (1030), Expect = 6.3e-108
Identity = 219/264 (82.95%), Postives = 229/264 (86.74%), Query Frame = 0


Query: 16  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAM 75
           NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPYSDAPMGALGA+M
Sbjct: 455 NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPYSDAPMGALGASM 514

Query: 76  KTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 135
           KT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE
Sbjct: 515 KTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEE 574

Query: 136 TLHGKPTVDGDAIKEK-------NETDPATNEDSQKIDTTENANGNDEVHDKKKSKDEIC 195
           TLHGKPT DGDAIKEK       N+T PATNEDSQKIDTTENANGNDEVHDKKKSKD   
Sbjct: 575 TLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDEVHDKKKSKD--- 634

Query: 196 TCG-----------VCQGTSKTYMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKI 255
           T G           V +    T+ EGHISKD YKTIVKKVVDKVTGSLQDGHIPQTQEKI
Sbjct: 635 TKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKI 694

Query: 256 DHYLSFSKSKLTKLVQKRLLHLFE 262
           DHYLSFSKSKLTKLVQ  ++H+ +
Sbjct: 695 DHYLSFSKSKLTKLVQ--VMHILK 713

[Close]

BLAST of CmoCh02G004400 vs. TAIR 10
Match: AT3G18640.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-22
Identity = 90/268 (33.58%), Postives = 124/268 (46.27%), Query Frame = 0


Query: 6   SNCRRRMKASNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLN--THTVSEAP---- 65
           S   + +   N V+ +QI QIT++SASLAQ+  N QP+PQL  +L    H+ S  P    
Sbjct: 435 STVEKPVLVQNTVSREQIDQITNISASLAQFLANGQPIPQLEQALQLPLHSESVQPNQAT 494

Query: 66  --SFPYSDAPMGALGAAMKTG----PVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEV 125
             S   S  P    G  M TG    P + +SK  +      +Q   L+  +   K T E 
Sbjct: 495 TQSNVVSSNPNQLWGLGMSTGAEGVPAVTASKISN---VEEIQEVSLDPKENGDKKTDEA 554

Query: 126 KGEVQIPNLPLSSGPCGISAEETLHGKPTVDGDAIKEKNETDPATNEDSQKIDTTENANG 185
             E                                +E  +T   TN+    +D  E+ + 
Sbjct: 555 SKE--------------------------------EEGKKTGEDTNDAENVVDEDEDGDD 614

Query: 186 NDEVHDKKKSKD-------EICTCGVCQGTSK-TYMEGHISKDFYKTIVKKVVDKVTGSL 245
           +    + KK KD       +     V +   K  + EG ++KD YK IVKKV +KVTG++
Sbjct: 615 DGSDEENKKEKDPKGMRAFKFALVEVVKELLKPAWKEGKLNKDGYKNIVKKVAEKVTGTM 667

Query: 246 QDGHIPQTQEKIDHYLSFSKSKLTKLVQ 254
           Q G++PQTQEKIDHYLS SK KLTKLVQ
Sbjct: 675 QSGNVPQTQEKIDHYLSASKPKLTKLVQ 667

[Close]

BLAST of CmoCh02G004400 vs. TAIR 10
Match: AT3G26850.1 (histone-lysine N-methyltransferases )

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-10
Identity = 47/173 (27.17%), Postives = 82/173 (47.40%), Query Frame = 0


Query: 91  LCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEETLHGKPTVDGDAIKE 150
           LC S    ++ V+        E    ++I  +        +S E+   GK   DG     
Sbjct: 91  LCESEMTARVSVSSNKPADVEENTAGIEIGEV--------VSGEDDEFGKNVDDGRECNS 150

Query: 151 KNETDPATNEDSQKIDTTENANGNDEVHDKKKSKDE-----------ICTCGVCQGTSKT 210
                P ++ ++ K++   +   N     ++KSK+            + T  V      +
Sbjct: 151 HETLTPNSDNENPKVENNVHEGDNTRKKSREKSKERDSSRSMKLFKVVLTKFVKDLLKPS 210

Query: 211 YMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKIDHYLSFSKSKLTKLV 253
           + +G++SK+ +KTIVK+VVDKV+ S++   IP+++ KID Y+  S+ KLTKLV
Sbjct: 211 WRQGNMSKEAFKTIVKRVVDKVSNSMEGRRIPKSRAKIDKYIDSSQQKLTKLV 255

[Close]

BLAST of CmoCh02G004400 vs. TAIR 10
Match: AT3G26850.2 (histone-lysine N-methyltransferases )

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-10
Identity = 47/173 (27.17%), Postives = 82/173 (47.40%), Query Frame = 0


Query: 91  LCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLPLSSGPCGISAEETLHGKPTVDGDAIKE 150
           LC S    ++ V+        E    ++I  +        +S E+   GK   DG     
Sbjct: 91  LCESEMTARVSVSSNKPADVEENTAGIEIGEV--------VSGEDDEFGKNVDDGRECNS 150

Query: 151 KNETDPATNEDSQKIDTTENANGNDEVHDKKKSKDE-----------ICTCGVCQGTSKT 210
                P ++ ++ K++   +   N     ++KSK+            + T  V      +
Sbjct: 151 HETLTPNSDNENPKVENNVHEGDNTRKKSREKSKERDSSRSMKLFKVVLTKFVKDLLKPS 210

Query: 211 YMEGHISKDFYKTIVKKVVDKVTGSLQDGHIPQTQEKIDHYLSFSKSKLTKLV 253
           + +G++SK+ +KTIVK+VVDKV+ S++   IP+++ KID Y+  S+ KLTKLV
Sbjct: 211 WRQGNMSKEAFKTIVKRVVDKVSNSMEGRRIPKSRAKIDKYIDSSQQKLTKLV 255

The following BLAST results are available for this feature:

BLAST of CmoCh02G004400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIH5	1.6e-21	33.58	Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6YYC0	1.1e-11	43.80	Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CmoCh02G004400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GEA9	2.3e-108	85.16	zinc finger CCCH domain-containing protein 38 isoform X3 OS=Cucurbita moschata O...	[more]
A0A6J1GEA4	3.0e-108	82.95	zinc finger CCCH domain-containing protein 38 isoform X1 OS=Cucurbita moschata O...	[more]
A0A6J1GDK5	3.0e-108	82.95	zinc finger CCCH domain-containing protein 38 isoform X5 OS=Cucurbita moschata O...	[more]
A0A6J1GEH4	3.0e-108	82.95	zinc finger CCCH domain-containing protein 38 isoform X2 OS=Cucurbita moschata O...	[more]
A0A6J1GDJ5	3.0e-108	82.95	zinc finger CCCH domain-containing protein 38 isoform X4 OS=Cucurbita moschata O...	[more]

BLAST of CmoCh02G004400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604278.1	1.4e-110	87.11	Zinc finger CCCH domain-containing protein 38, partial [Cucurbita argyrosperma s...	[more]
XP_022949980.1	4.8e-108	85.16	zinc finger CCCH domain-containing protein 38 isoform X3 [Cucurbita moschata]	[more]
XP_022949981.1	6.3e-108	82.95	zinc finger CCCH domain-containing protein 38 isoform X4 [Cucurbita moschata]	[more]
XP_022949979.1	6.3e-108	82.95	zinc finger CCCH domain-containing protein 38 isoform X2 [Cucurbita moschata]	[more]
XP_022949982.1	6.3e-108	82.95	zinc finger CCCH domain-containing protein 38 isoform X5 [Cucurbita moschata]	[more]

BLAST of CmoCh02G004400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18640.1	1.1e-22	33.58	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G26850.1	2.2e-10	27.17	histone-lysine N-methyltransferases	[more]
AT3G26850.2	2.2e-10	27.17	histone-lysine N-methyltransferases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..162
None	No IPR available	PANTHER	PTHR36886:SF8	ZINC FINGER CCCH DOMAIN PROTEIN-RELATED	coord: 12..186
None	No IPR available	PANTHER	PTHR36886	PROTEIN FRIGIDA-ESSENTIAL 1	coord: 12..186
None	No IPR available	PANTHER	PTHR36886:SF8	ZINC FINGER CCCH DOMAIN PROTEIN-RELATED	coord: 200..253
None	No IPR available	PANTHER	PTHR36886	PROTEIN FRIGIDA-ESSENTIAL 1	coord: 200..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004400.1	CmoCh02G004400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding