CmoCh02G004050 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G004050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich RNA-binding protein-like
Location	Cmo_Chr02: 2084484 .. 2087078 (-)
RNA-Seq Expression	CmoCh02G004050
Synteny	CmoCh02G004050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGTGCCAATCACACCGCCTTTTAGGTTAACCCTGATTGCAAATAAACCGCGTGAGTTAAATACTGAGCAAACCCTAAAACTAACCATAGTTATCTTCTGCCCTCTATATAACCAACCCCTTGGTTCATTTCTAACTCATTGCGTTCGTCTTCAGGGGTGTGGATTTGTGTCGATCCCCCTCTCTCTCTTTTCCTTCTTGTTTGAACCCCTTTCTAGGGTTAGGGTTTTTTTGATTTCCATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGGTCCGTTTGTCATCGTCGAGATCTGGATTTGTTCCGATTCGGCTTTGACGATCCTAAATCTGATCTGTGACTCTCATCTGTTTTGTGTTACTTTACTACTACTACTACTCTCTTGATATGTTACTTTTATTACTCTCCTTTCATCGGTACGTTTACCTTCATCTTGGTTACAGAGACGAAGAACGATCGATTTTTCTTTAATTTTCATTTTTGTTCCAGTTTGCCTCAATTGTTGTGCTTCTGTGACTGATCTTTGTTTTCTTGTGATAATTGTTATCCAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACGTTTGTGGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGCAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGCGGTGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGCGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTATGGTGGAGGACGGGACCGTGGATACGGCGGCGGTGGTGGTGGCGATGGTGGCCGCTACCAGCGAGGAGGTGGCGGTGGCGGTGGATCTGAAGGAGGGTGGAGAAATTAGGCGGTGGTGCATTACGATTTAGCTTTTGGTTTCGTCGAAGTATTAGTGTGATGATAAAAAAAAAAAAAAAAATCTTAGCAGCCTTTTGATTTCCCTGTACTGTGTTCCGTTTGGGTGCTCTCTTTTTTTGACCGATGACCGATGGGTTTCGTGTTCCTCATTATGTCTCTGTTACAACGAAAAAATGATATAAGAAAATGAAGTAGTACAGCTCTTCGTTCTCAACAAATATATGTTTCTGTTCATCCTATTTCTCTGCCGAATCTCCGCCATGGCCAGGAATCTCCATTAAAGGGGTTATTCAGAAAAAGCAAGATCCATTTTCATGATATTTTCAGAGGTGTCCTGTACTGTGACCATAAATTATTGCACTGGGAACGGCAAATGGGGAAGAAATTATTAGTTTTTAATATAATTTGGCTGTAGTTTTGGTCTGATCCGATTGACGACAGGTAGGCAGAAAATATTGTAGGAGATTCGTGATATTTTTGTGGAAAAAGATGTGAGATATTTTTGCAATGATTCTCGTGGTATATTTCTTTTTTAATTGGGCCATGATGGGTCTGCCACATCGAATTCCGTAATGGACAAGTGGGCTTGGAATCTTATCGTTGAAGGAATATTCTTTCTTTCAAATTTTGAATTTAATTTGTCAAATGGCTAAGCGAACACCCCATTGTTATGGAACTTTGTGTAATTGTGGACACATTTCATTTCTTTGAGTTAGTAATTACCTCTGCTTTCCAATTTTAAGGGAAATAGAGATGAGTTAAAGACATGCGAATGTGGAGTTCTTAATATCTGCAGTGTACTAGTGACGCTGAGTTTTGAAGGGGATAGACACCGAACACGGTATGTCAGCAAAGACATTGAGTTGAGCTCCGAAGAGGGGTGGACAGGATGGTGTGCCATAGAAGATGCTGGGACCCAAAAAGATGGATTGTAAGATCCCACATCAATTGGAGAAAGGAGATGAATCTCTCTCTGGAAGGAAAACCAAGATTAGATCCGTCCTCAATTTCTTTATAAGCCCCCAAAAATATGAGATAATATATCTAGAGAGAAGCTTCAAAGGAAGAACGAGGATTCCATTACAAAATGATGAGTAAAGAGTAAAGATAGTTTGAAGCAGAAGAATGTAAGGGACTGGATGATGAATGAGAGAGAGGGTTTAAGGGTAAAAAAACAGAGGAAAGACATATGGGGTCCAATTCCCCATGTATTGTTGTCGTTTTTCGCTGTAGCCGAATATTGTGGCCATGCCCTTCCACACCTTCTCACATGCCCTTCTCCTTCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTTTTCCGAATACTTTCTTAAGGATTACTCGGTGATTACAGACACCTACTAAGTCCTACCAAGCCATTATAATGCTTATCAGGTTCTATCCATCTTTTTAGTTATTGGGCTCTATCAACCAAGTATTGTTCCAACCGAGAACTATCGAGTCATATTGATGGTTTATGTCGCCTTGAGCATCAACATGACATCTAACTTTACTACTTGTTTGAATGTGCTTATCGAAACA

mRNA sequence

AAGGTGCCAATCACACCGCCTTTTAGGTTAACCCTGATTGCAAATAAACCGCGTGAGTTAAATACTGAGCAAACCCTAAAACTAACCATAGTTATCTTCTGCCCTCTATATAACCAACCCCTTGGTTCATTTCTAACTCATTGCGTTCGTCTTCAGGGGTGTGGATTTGTGTCGATCCCCCTCTCTCTCTTTTCCTTCTTGTTTGAACCCCTTTCTAGGGTTAGGGTTTTTTTGATTTCCATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACGTTTGTGGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGCAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGCGGTGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGCGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTATGGTGGAGGACGGGACCGTGGATACGGCGGCGGTGGTGGTGGCGATGGTGGCCGCTACCAGCGAGGAGGTGGCGGTGGCGGTGGATCTGAAGGAGGGTGGAGAAATTAGGCGGTGGTGCATTACGATTTAGCTTTTGGTTTCGTCGAAGTATTAGTGTGATGATAAAAAAAAAAAAAAAAATCTTAGCAGCCTTTTGATTTCCCTGTACTGTGTTCCGTTTGGGTGCTCTCTTTTTTTGACCGATGACCGATGGGTTTCGTGTTCCTCATTATGTCTCTGTTACAACGAAAAAATGATATAAGAAAATGAAGTAGTACAGCTCTTCGTTCTCAACAAATATATGTTTCTGTTCATCCTATTTCTCTGCCGAATCTCCGCCATGGCCAGGAATCTCCATTAAAGGGGTTATTCAGAAAAAGCAAGATCCATTTTCATGATATTTTCAGAGGTGTCCTGTACTGTGACCATAAATTATTGCACTGGGAACGGCAAATGGGGAAGAAATTATTAGTTTTTAATATAATTTGGCTGTAGTTTTGGTCTGATCCGATTGACGACAGGTAGGCAGAAAATATTGTAGGAGATTCGTGATATTTTTGTGGAAAAAGATGTGAGATATTTTTGCAATGATTCTCGTGGTATATTTCTTTTTTAATTGGGCCATGATGGGTCTGCCACATCGAATTCCGTAATGGACAAGTGGGCTTGGAATCTTATCGTTGAAGGAATATTCTTTCTTTCAAATTTTGAATTTAATTTGTCAAATGGCTAAGCGAACACCCCATTGTTATGGAACTTTGTGTAATTGTGGACACATTTCATTTCTTTGAGTTAGTAATTACCTCTGCTTTCCAATTTTAAGGGAAATAGAGATGAGTTAAAGACATGCGAATGTGGAGTTCTTAATATCTGCAGTGTACTAGTGACGCTGAGTTTTGAAGGGGATAGACACCGAACACGGTATGTCAGCAAAGACATTGAGTTGAGCTCCGAAGAGGGGTGGACAGGATGGTGTGCCATAGAAGATGCTGGGACCCAAAAAGATGGATTGTAAGATCCCACATCAATTGGAGAAAGGAGATGAATCTCTCTCTGGAAGGAAAACCAAGATTAGATCCGTCCTCAATTTCTTTATAAGCCCCCAAAAATATGAGATAATATATCTAGAGAGAAGCTTCAAAGGAAGAACGAGGATTCCATTACAAAATGATGAGTAAAGAGTAAAGATAGTTTGAAGCAGAAGAATGTAAGGGACTGGATGATGAATGAGAGAGAGGGTTTAAGGGTAAAAAAACAGAGGAAAGACATATGGGGTCCAATTCCCCATGTATTGTTGTCGTTTTTCGCTGTAGCCGAATATTGTGGCCATGCCCTTCCACACCTTCTCACATGCCCTTCTCCTTCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTTTTCCGAATACTTTCTTAAGGATTACTCGGTGATTACAGACACCTACTAAGTCCTACCAAGCCATTATAATGCTTATCAGGTTCTATCCATCTTTTTAGTTATTGGGCTCTATCAACCAAGTATTGTTCCAACCGAGAACTATCGAGTCATATTGATGGTTTATGTCGCCTTGAGCATCAACATGACATCTAACTTTACTACTTGTTTGAATGTGCTTATCGAAACA

Coding sequence (CDS)

ATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACGTTTGTGGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGCAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGCGGTGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGCGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTATGGTGGAGGACGGGACCGTGGATACGGCGGCGGTGGTGGTGGCGATGGTGGCCGCTACCAGCGAGGAGGTGGCGGTGGCGGTGGATCTGAAGGAGGGTGGAGAAATTAG

Protein sequence

MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN

Homology

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BLAST of CmoCh02G004050 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.6e-37
Identity = 119/175 (68.00%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGG-------GGGGGGYNRGGGGGGGYGGRREGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG        GGGGGGY  GGGGG   GG   GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY-----GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGG 164
           GGG   GGGGY GGGGGY     GGG YGGGR  G GG GGG+GG Y   GGGGG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 175

[Close]

BLAST of CmoCh02G004050 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.5e-36
Identity = 112/155 (72.26%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           + VEYRCFVGGLAWAT++ +LE+AFS FG+I ++KI+NDRETGRSRGFGFVTF DE++MR
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGG---GGGGGYGGRREGGGGG---- 123
            AIE MNGQ LDGR+ITVNEAQ RG GGGGG    GG   GGGGGYGGRREGGGGG    
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGG 121

Query: 124 -YNRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGG 151
               GGGGYGGGGGGYGG   GG  D GYGGGGGG
Sbjct: 122 RREGGGGGYGGGGGGYGGRREGG--DGGYGGGGGG 154

[Close]

BLAST of CmoCh02G004050 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-35
Identity = 123/171 (71.93%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD  +LE AFS FGE+V++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGG--GGGGYGGRREGGGGGYN 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG G GGGG   GGG  GGGGYGG   G GGG  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGG-R 120

Query: 121 RGGGGYGGGGGGY-----GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGG 165
           R GGGY GGGGGY     GGGGYGGG  R  GG GGG+GG Y  GGGGGGG
Sbjct: 121 REGGGYSGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGY--GGGGGGG 168

[Close]

BLAST of CmoCh02G004050 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.6e-35
Identity = 122/175 (69.71%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AFS +GE++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG    G GGGGGY   R GGGGGY  G
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG----GRGGGGGY---RSGGGGGYGGG 120

Query: 121 GGGYGGGG--GGYGGGGYG----GGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGW 170
           GGGYGGGG  GGY GGG G    GG   GYGGGG  DGG  + GG GG G  GGW
Sbjct: 121 GGGYGGGGREGGYSGGGGGYSSRGGGGGGYGGGGRRDGG--EGGGYGGSGGGGGW 166

[Close]

BLAST of CmoCh02G004050 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-34
Identity = 121/179 (67.60%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MA++ VEYRCFVGGLAWAT+N  LE+AF++FG+++++K++ DRETGRSRGFGFVTF  E+
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           +M  AIE MNG+ LDGR+ITVN+AQ RGGGGGGGGY   GGGGGGYGGR    GGGY  G
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGY---GGGGGGYGGRE---GGGYGGG 120

Query: 121 GGGYGG---GGGGYGGGGYGGGRDRGYGG--GGGGDGGRYQRGGGGGGG---SEGGWRN 172
           GGGYGG   GGGGYGGGGYGGG   GYGG  GGGG GG    GGG GG    S G WRN
Sbjct: 121 GGGYGGRREGGGGYGGGGYGGG-GGGYGGREGGGGYGG----GGGYGGNRGDSGGNWRN 168

[Close]

BLAST of CmoCh02G004050 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.1e-70
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 172
           GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of CmoCh02G004050 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 9.1e-66
Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYN 120
           AMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGGYNRGGGGGGGYGGRRE GGGGGYN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGY-GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 172
           RGGGGYGGGGGGY GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of CmoCh02G004050 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 163/175 (93.14%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFV+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNR-GGGGGGGYGGRRE-GGGGGYN 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGYNR GGGGGGGYGGRRE GGGGGYN
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYNRGGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQR--GGGGGGGSEGGWRN 172
           RGGGGYGGGGGGYGGGGYGGGRDRGYGGGG G G RY R  GGGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDG-GSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of CmoCh02G004050 vs. ExPASy TrEMBL
Match: A0A6J1L3C8 (glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57
Identity = 154/173 (89.02%), Postives = 154/173 (89.02%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYNRGGGGGGGYGGRREGGGGGYNR 120
           AMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGGYNRGGGG                 
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGG----------------- 120

Query: 121 GGGGYGGGGGGY-GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 172
           GGGGYGGGGGGY GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 156

[Close]

BLAST of CmoCh02G004050 vs. ExPASy TrEMBL
Match: A0A6J1JGK0 (glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484309 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.6e-57
Identity = 160/176 (90.91%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFV+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNR---GGGGGGGYGGRREGGGGGY 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGYNR   GGGGGGGYGGRREGGGGGY
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYNRGGGGGGGGGGYGGRREGGGGGY 120

Query: 121 NRGGGGY--GGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 172
           NRGGGGY  GGGGGGYGGGGYGGGRDRGYGGG G  G RY R  GGGGGSEGGWRN
Sbjct: 121 NRGGGGYGSGGGGGGYGGGGYGGGRDRGYGGGDG--GSRYNR--GGGGGSEGGWRN 171

[Close]

BLAST of CmoCh02G004050 vs. NCBI nr
Match: XP_022947194.1 (glycine-rich RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 273.5 bits (698), Expect = 1.3e-69
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 172
           GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of CmoCh02G004050 vs. NCBI nr
Match: XP_023533100.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533101.1 glycine-rich RNA-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 4.0e-68
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 172
           GGGYGGGGGGYGGGGYGGGRDRGY GGGGGDGGRYQRGGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGRDRGY-GGGGGDGGRYQRGGGGGGGSEGGWRN 170

[Close]

BLAST of CmoCh02G004050 vs. NCBI nr
Match: KAG6605080.1 (hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.8 bits (673), Expect = 1.0e-66
Identity = 170/172 (98.84%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQR-GGGGGGGSEGGWRN 172
           GGGYGGGGGGYGGGGYGGGRDRGY GGGGGDGGRYQR GGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGRDRGY-GGGGGDGGRYQRGGGGGGGGSEGGWRN 171

[Close]

BLAST of CmoCh02G004050 vs. NCBI nr
Match: XP_023006868.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-65
Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYN 120
           AMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGGYNRGGGGGGGYGGRRE GGGGGYN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGY-GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 172
           RGGGGYGGGGGGY GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of CmoCh02G004050 vs. NCBI nr
Match: XP_023512522.1 (glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 8.2e-61
Identity = 162/172 (94.19%), Postives = 164/172 (95.35%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF +EE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGY-GGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 172
           GGGYGGGGGGYGGGGY GGGRDRGYGGG G  G RY RGGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGGRDRGYGGGDG--GSRYNRGGGGGGGSEGGWRN 169

[Close]

BLAST of CmoCh02G004050 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 154.8 bits (390), Expect = 6.1e-38
Identity = 119/175 (68.00%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGG-------GGGGGGYNRGGGGGGGYGGRREGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG        GGGGGGY  GGGGG   GG   GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY-----GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGG 164
           GGG   GGGGY GGGGGY     GGG YGGGR  G GG GGG+GG Y   GGGGG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 175

[Close]

BLAST of CmoCh02G004050 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-37
Identity = 117/163 (71.78%), Postives = 132/163 (80.98%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG  +RGGG  GG GGRRE GGGGY+ G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG--HRGGGSYGGGGGRRE-GGGGYSGG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGG 164
           GGGY   GG  GGG YGGGR  G GG GGG+GG Y   GGGGG
Sbjct: 121 GGGYSSRGG--GGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 158

[Close]

BLAST of CmoCh02G004050 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-33
Identity = 115/170 (67.65%), Postives = 128/170 (75.29%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF DE+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGG-------GGGYNRGGGG---GGGYGGRREGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGG       GGGY  GGGG   GGG GG   GG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGYNRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGG 164
           GGGY R  GGYG GGGG GG GYGGG  R  GG GGGDGG Y  GGGGGG
Sbjct: 122 GGGYERRSGGYGSGGGG-GGRGYGGGGRREGGGYGGGDGGSY--GGGGGG 168

[Close]

BLAST of CmoCh02G004050 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-32
Identity = 93/136 (68.38%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF DE+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRGGGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGGGG    GG GGGY   R GGGGGY+     
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGG---RGGSGGGY---RSGGGGGYS----- 121

Query: 124 YGGGGGGYGGGGYGGG 140
            GGGGGGY GGG GGG
Sbjct: 122 -GGGGGGYSGGGGGGG 125

[Close]

BLAST of CmoCh02G004050 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 84.7 bits (208), Expect = 7.7e-17
Identity = 95/169 (56.21%), Postives = 116/169 (68.64%), Query Frame = 0


Query: 9   RCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMRSAIEA 68
           + F+GG+A++ D  +L +AF+ +GE+V+ +++ DRETGRSRGFGFVTF   EA  SAI+A
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGQNLDGRSITVNEAQQR--GGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRGGGGYGG 128
           ++G++L GR + VN A  R  GGG GGGGY  GGGG GG GG   GG GGY  G GGYGG
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGYGGGGGGYGGSGG-YGGGAGGYG-GSGGYGG 160

Query: 129 GGGGYG---GGGYGGGRDRGYGG-GGGGDGG--RYQRGGGGGGGSEGGW 170
           G GGYG   GGGYGG    GYGG G GG GG      G GGG GS GG+
Sbjct: 161 GAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGF 207

The following BLAST results are available for this feature:

BLAST of CmoCh02G004050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03250	8.6e-37	68.00	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
Q03878	9.5e-36	72.26	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
P49311	2.8e-35	71.93	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
P49310	3.6e-35	69.71	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q99070	1.0e-34	67.60	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]

BLAST of CmoCh02G004050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G631	6.1e-70	100.00	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1L652	9.1e-66	98.28	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FRL7	1.1e-58	93.14	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1L3C8	1.2e-57	89.02	glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cuc...	[more]
A0A6J1JGK0	1.6e-57	90.91	glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148430...	[more]

BLAST of CmoCh02G004050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947194.1	1.3e-69	100.00	glycine-rich RNA-binding protein 1-like [Cucurbita moschata]	[more]
XP_023533100.1	4.0e-68	99.42	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]
KAG6605080.1	1.0e-66	98.84	hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023006868.1	1.9e-65	98.28	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023512522.1	8.2e-61	94.19	glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh02G004050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.1	6.1e-38	68.00	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	1.4e-37	71.78	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	7.7e-33	67.65	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	2.2e-32	68.38	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	7.7e-17	56.21	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 2.0E-28 score: 110.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 2.5E-23 score: 81.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 19.757713
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..107 e-value: 2.0E-31 score: 110.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..171
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..170
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..170
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004050.1	CmoCh02G004050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006858	extracellular transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:1990428	miRNA transport
biological_process	GO:0050688	regulation of defense response to virus
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0035197	siRNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding