CmoCh02G004030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G004030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor RADIALIS-like
Location	Cmo_Chr02: 2079125 .. 2080515 (-)
RNA-Seq Expression	CmoCh02G004030
Synteny	CmoCh02G004030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCGACGGTCGATATAGATCGGATGAAACCCGCTCCGAAAGGAGAGAGAAATGGTGCATCTTTGTGTTCTCTCCCTCTTTCCATTTTGTGGTTCCTAAGCAAACAAATCATTCAAAATTCTCACTCCCATTCCCTTTTCTTCCCTTCTCTATAAATCCCTTCCTTCTTCAACTCTTCTCCCTCCCTCACTTAATCCTTCATCAATGGCTTCCATCTCCTCCTCTCATGACTCTACCTCATGGTCTCCCAACCAAAACAAAGCCTTTGAAACAGCCTTGGCTGTCTTTGACAAGGACACGCCCGATCGCTGGCTCAATGTCGCCAAGGCCGTTGGCGACAAGACTGTCGATGAAGTCAAGAGACATTTCGAGCTTCTCGTTGAGGATGTTAAGCACATTGAATCTGGCCTCGTCCCATTTCCTAATTACACCTCCTCCTCCTCTTCTGCCCCTCGAACCTCCCATGATAACATCAATGGTCAAGAACAAAGGTACTTCTTCCGTAACGTACTTTTGTTCATAACCGTTAACGTACTTTTGTTCATAACCGTTAAACTATGTTCCAGTCACGTGCCCTCTTCAAAGTTGATTAATAGCAATAATTACAACGTTAATATTATAATATGTTAATTGGTTACCTAACCTTATTCTAAAAGCAAACTTAATTAATCGTTTAGTGTTGATATTTTCTTTTCTCACAAATATCCATTGCTTTGAAACAAATTAGACTAGGGGCTCCTTTTGCAAAAATAAAAACTATTATTATTTAATTTTTAAAAATTATGATTTTTTTCTTACTAAAAAAATGTTTTTTTTTGTAGTATTAGTTTTAAATTTGACCAATTTTGGAAATTAAAAAAAAAAAATTTAAGGTGCAAAATGAAAATGGTAAAAATATCTTGTTTTAAAAAATGTCACTGAGAAAAGGACTCTCAAAACTCTATAAAATTCAAATAAATATCTAAAATAATTTATTTTTGTAAATAAAATATTTAACCAAAAAAAAGTGGCAAGAACTGTTGATGAACACCTATATGCGTAGATGAGGAGTCTTCTCTTTCATAAATGAAAGAAAAAAAAACATTATCTTTGACTTAGTCTCTTTGAATAATTAAGTTTTCAAAATTTTAAATTAAATTATATTAGTGGCTGTTTAATCGAAGATATATATGATATAATGAAGATATATATGATATAATATTTTAAACAATTGAGCTATGATTAAATTGGTGAAACATGACGAAGTTGAGTCGTTTAATAATAATTGCAGGATGAGGAATATGAAGCTGGGCTAAAATGGTTGAAATTGGAAGCAACTTGGAAGGGGGTGGGATGAGGAAGAACAAAGATTGGATGGCTATTTGGAAGTCTTCAAGAATCAAAACCTGCA

mRNA sequence

ATTCCGACGGTCGATATAGATCGGATGAAACCCGCTCCGAAAGGAGAGAGAAATGGTGCATCTTTGTGTTCTCTCCCTCTTTCCATTTTGTGGTTCCTAAGCAAACAAATCATTCAAAATTCTCACTCCCATTCCCTTTTCTTCCCTTCTCTATAAATCCCTTCCTTCTTCAACTCTTCTCCCTCCCTCACTTAATCCTTCATCAATGGCTTCCATCTCCTCCTCTCATGACTCTACCTCATGGTCTCCCAACCAAAACAAAGCCTTTGAAACAGCCTTGGCTGTCTTTGACAAGGACACGCCCGATCGCTGGCTCAATGTCGCCAAGGCCGTTGGCGACAAGACTGTCGATGAAGTCAAGAGACATTTCGAGCTTCTCGTTGAGGATGTTAAGCACATTGAATCTGGCCTCGTCCCATTTCCTAATTACACCTCCTCCTCCTCTTCTGCCCCTCGAACCTCCCATGATAACATCAATGGTCAAGAACAAAGGATGAGGAATATGAAGCTGGGCTAAAATGGTTGAAATTGGAAGCAACTTGGAAGGGGGTGGGATGAGGAAGAACAAAGATTGGATGGCTATTTGGAAGTCTTCAAGAATCAAAACCTGCA

Coding sequence (CDS)

ATGGCTTCCATCTCCTCCTCTCATGACTCTACCTCATGGTCTCCCAACCAAAACAAAGCCTTTGAAACAGCCTTGGCTGTCTTTGACAAGGACACGCCCGATCGCTGGCTCAATGTCGCCAAGGCCGTTGGCGACAAGACTGTCGATGAAGTCAAGAGACATTTCGAGCTTCTCGTTGAGGATGTTAAGCACATTGAATCTGGCCTCGTCCCATTTCCTAATTACACCTCCTCCTCCTCTTCTGCCCCTCGAACCTCCCATGATAACATCAATGGTCAAGAACAAAGGATGAGGAATATGAAGCTGGGCTAA

Protein sequence

MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG

Homology

[Close]

BLAST of CmoCh02G004030 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-24
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLV 60
           MAS S SS  S SW+  QNKAFE ALA +D+DTP+RW NVAK VG KT +EVKRH+ELLV
Sbjct: 1   MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61  EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           +D+  IE+G VPFPNY +S       ++  ++ +E+RMRNM+L
Sbjct: 61  QDINSIENGHVPFPNYRTSGG----CTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of CmoCh02G004030 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.5e-24
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 13  WSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPF 72
           WS  +NKAFE ALAV+DKDTPDRW NVA+AV  +T +EVK+H+E+LVED+K+IESG VPF
Sbjct: 11  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 73  PNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           PNY        RT+  N+   E+R RN+K+
Sbjct: 71  PNY--------RTTGGNMKTDEKRFRNLKI 92

[Close]

BLAST of CmoCh02G004030 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-22
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLV 60
           MAS S SS+ S SW+  QNKAFE ALAV+D+DTPDRW NVA+AVG KT +E KR ++LLV
Sbjct: 1   MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLV 60

Query: 61  EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
            D++ IE+G VPFP+Y +++ ++ R     +  +E+RMR+MKL
Sbjct: 61  RDIESIENGHVPFPDYKTTTGNSNR---GRLRDEEKRMRSMKL 100

[Close]

BLAST of CmoCh02G004030 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.8e-21
Identity = 57/102 (55.88%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MAS S S  S  W+ +QNK FE ALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVE
Sbjct: 1   MASNSRSSIS-PWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           D+ +IE+G VP PNY +  S++ R+ +D      ++M+N+K+
Sbjct: 61  DLINIETGRVPLPNYKTFESNS-RSIND---FDTRKMKNLKI 97

[Close]

BLAST of CmoCh02G004030 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-20
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MAS SS   S+SW+  QNK FE ALAV+DKDTPDRW NVAKAVG K+ +EVKRH+++LVE
Sbjct: 1   MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           D+ +IE  LVP P Y +    +     D+ +   + M+NM++
Sbjct: 61  DLMNIEQDLVPLPKYKTVDVGSKSRGIDDFD--LRLMKNMRI 99

[Close]

BLAST of CmoCh02G004030 vs. ExPASy TrEMBL
Match: A0A6J1G543 (transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE
Sbjct: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG 104
           DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG
Sbjct: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG 103

[Close]

BLAST of CmoCh02G004030 vs. ExPASy TrEMBL
Match: A0A6J1L657 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499536 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.0e-35
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
          MASISSS DSTSWSPNQNKAFE ALA+FDKDTPDRWLNVAKAVGDKT DEVKRHFELLVE
Sbjct: 1  MASISSSQDSTSWSPNQNKAFERALAIFDKDTPDRWLNVAKAVGDKTADEVKRHFELLVE 60

Query: 61 DVKHIESGLVPFPNYTSSSSSA 83
          DVKHIESGLVPFPNYTSSSSS+
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSS 82

[Close]

BLAST of CmoCh02G004030 vs. ExPASy TrEMBL
Match: A0A0A0LL58 (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 85/103 (82.52%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLV 60
           MASISSS  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVAKAV G KT DEVKRHF+ LV
Sbjct: 1   MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60

Query: 61  EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           EDVKHIESG VPFP YTSSSSS P TS+ NI  QEQRMRNMKL
Sbjct: 61  EDVKHIESGRVPFPKYTSSSSS-PTTSNANIKDQEQRMRNMKL 100

[Close]

BLAST of CmoCh02G004030 vs. ExPASy TrEMBL
Match: A0A1S3CDK8 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 88/109 (80.73%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MASI-SSSHD--STSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFE 60
           MASI SSSHD  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVA AV G KT DEVKRHF+
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  LLVEDVKHIESGLVPFPNYT--SSSSSAPRTSHD-NINGQEQRMRNMKL 103
            LVEDVKHIESG VPFP YT  SSSSSAPRTS + NI  QEQRMRNMKL
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 109

[Close]

BLAST of CmoCh02G004030 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.1e-33
Identity = 80/103 (77.67%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLV 60
           MAS+SSSH S+SW+P +NKAFE ALAVFDKDTPDRWLNVAKAV G KT DEVK HF+LLV
Sbjct: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           EDVKHIE G VPFPNY SS++SA  TS+ NIN QEQRMRN+KL
Sbjct: 61  EDVKHIEFGHVPFPNY-SSTASATGTSNANINDQEQRMRNLKL 102

[Close]

BLAST of CmoCh02G004030 vs. NCBI nr
Match: XP_022946976.1 (transcription factor RADIALIS-like [Cucurbita moschata])

HSP 1 Score: 206.8 bits (525), Expect = 8.7e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE
Sbjct: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG 104
           DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG
Sbjct: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG 103

[Close]

BLAST of CmoCh02G004030 vs. NCBI nr
Match: KAG7035087.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 7.6e-46
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MASISSSH S+SWSPNQNKAFE ALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE
Sbjct: 1   MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG 104
           DVKHIESGLVPFPNYTSSSSSAPRTS+DNIN QE+RMRNMKLG
Sbjct: 61  DVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNMKLG 103

[Close]

BLAST of CmoCh02G004030 vs. NCBI nr
Match: KAG6605078.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.4 bits (485), Expect = 3.8e-45
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MASISSSH S+SWSPNQNKAFE ALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE
Sbjct: 1   MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG 104
           DVKHIESGLVPFPNYTSSSSSAPR S+DNIN QE+RMRNMKLG
Sbjct: 61  DVKHIESGLVPFPNYTSSSSSAPRISYDNINDQEKRMRNMKLG 103

[Close]

BLAST of CmoCh02G004030 vs. NCBI nr
Match: XP_023515007.1 (transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-45
Identity = 97/102 (95.10%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MASISSSHDSTSWSPNQNKAFE ALAVFDKDTPDRWLNVAKAVGDKT DEVKRHFELLVE
Sbjct: 1   MASISSSHDSTSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTADEVKRHFELLVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           DVKHIESGLVPFPNYT  SSSAPRTSHDNIN QEQRMRNMKL
Sbjct: 61  DVKHIESGLVPFPNYT--SSSAPRTSHDNINDQEQRMRNMKL 100

[Close]

BLAST of CmoCh02G004030 vs. NCBI nr
Match: XP_038902123.1 (protein RADIALIS-like 2 [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 7.9e-35
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLV 60
           MASISSSHDS SW+PNQNKAFE ALAVFDKDTPDRWLNVA AV G KT DEVKRHF+LLV
Sbjct: 1   MASISSSHDSGSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTADEVKRHFDLLV 60

Query: 61  EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           EDVKHIESG VPFPNYTS+S+ A  + + N+N QEQRMRN+KL
Sbjct: 61  EDVKHIESGRVPFPNYTSTSTPA-TSDNGNLNDQEQRMRNLKL 102

[Close]

BLAST of CmoCh02G004030 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 112.1 bits (279), Expect = 2.7e-25
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLV 60
           MAS S SS  S SW+  QNKAFE ALA +D+DTP+RW NVAK VG KT +EVKRH+ELLV
Sbjct: 1   MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61  EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           +D+  IE+G VPFPNY +S       ++  ++ +E+RMRNM+L
Sbjct: 61  QDINSIENGHVPFPNYRTSGG----CTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of CmoCh02G004030 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-23
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLV 60
           MAS S SS+ S SW+  QNKAFE ALAV+D+DTPDRW NVA+AVG KT +E KR ++LLV
Sbjct: 1   MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLV 60

Query: 61  EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
            D++ IE+G VPFP+Y +++ ++ R     +  +E+RMR+MKL
Sbjct: 61  RDIESIENGHVPFPDYKTTTGNSNR---GRLRDEEKRMRSMKL 100

[Close]

BLAST of CmoCh02G004030 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-22
Identity = 57/102 (55.88%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MAS S S  S  W+ +QNK FE ALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVE
Sbjct: 1   MASNSRSSIS-PWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           D+ +IE+G VP PNY +  S++ R+ +D      ++M+N+K+
Sbjct: 61  DLINIETGRVPLPNYKTFESNS-RSIND---FDTRKMKNLKI 97

[Close]

BLAST of CmoCh02G004030 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
          MAS S S  S  W+ +QNK FE ALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVE
Sbjct: 1  MASNSRSSIS-PWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKHIESGLVPFPNYTSSSSSA 83
          D+ +IE+G VP PNY +  S++
Sbjct: 61 DLINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of CmoCh02G004030 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-21
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60
           MAS SS   S+SW+  QNK FE ALAV+DKDTPDRW NVAKAVG K+ +EVKRH+++LVE
Sbjct: 1   MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61  DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 103
           D+ +IE  LVP P Y +    +     D+ +   + M+NM++
Sbjct: 61  DLMNIEQDLVPLPKYKTVDVGSKSRGIDDFD--LRLMKNMRI 99

The following BLAST results are available for this feature:

BLAST of CmoCh02G004030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	3.8e-24	57.28	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	8.5e-24	58.89	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	1.6e-22	55.34	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q1A173	8.8e-21	55.88	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	3.4e-20	51.96	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of CmoCh02G004030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G543	4.2e-50	100.00	transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995...	[more]
A0A6J1L657	5.0e-35	93.90	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499536 PE=4 SV=1	[more]
A0A0A0LL58	1.2e-33	82.52	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]
A0A1S3CDK8	4.7e-33	80.73	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1	[more]
A0A6J1JBS7	6.1e-33	77.67	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]

BLAST of CmoCh02G004030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946976.1	8.7e-50	100.00	transcription factor RADIALIS-like [Cucurbita moschata]	[more]
KAG7035087.1	7.6e-46	94.17	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6605078.1	3.8e-45	93.20	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023515007.1	8.4e-45	95.10	transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]	[more]
XP_038902123.1	7.9e-35	79.61	protein RADIALIS-like 2 [Benincasa hispida]	[more]

BLAST of CmoCh02G004030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.7e-25	57.28	RAD-like 1	[more]
AT2G21650.1	1.1e-23	55.34	Homeodomain-like superfamily protein	[more]
AT1G75250.2	6.3e-22	55.88	RAD-like 6	[more]
AT1G75250.1	1.1e-21	63.41	RAD-like 6	[more]
AT1G19510.1	2.4e-21	51.96	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 e-value: 0.0011 score: 28.3
None	No IPR available	GENE3D	1.10.10.60		coord: 4..72 e-value: 4.3E-21 score: 76.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..96
None	No IPR available	PANTHER	PTHR43952:SF40	OS05G0579600 PROTEIN	coord: 1..87
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..87
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004030.1	CmoCh02G004030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity