CmoCh02G003790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G003790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 1931137 .. 1935527 (+)
RNA-Seq Expression	CmoCh02G003790
Synteny	CmoCh02G003790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATTTCATGAGAAAGGGTTGCGGTTGCTGGAACACACCGACGGAGCTCCGATGATGTCGATCCAGTGTACATATTATAAATAATTTGAGTATTGATCGGGCACGGTCTGGATGTAGCACCATTAGCCGTCCGGTCATCGGGGGGGGAATTGAGGAACCTAGCTGTTTGATCTTCGATGGCTGACTTGTAAAAAATGTTAACGACTATGGTGGAGCAAAGGACCGAGGCTTCTAGATCAACGAAAGAAGGAGAGGAAGCGAAACAGAAGAAAGCTGTGGTTTGGGAACCAATCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTGGTCGTAAAGTAAGGCTTGGTCTGTATATTCTTTCTGCATCTGGATGTTAGGGAGGCATTATTTAAGTAGATTTGGGAGGGCAATGCGTTCTCAGTTACATTTAGGGTTGCGCGGTTCTTGTTTCCCCTTCGTAGTCGCGATTGCTCATAATCCCTTTCACTTCATCGGGCTACCAAATATTGTCCTTTTAATATTGTCCTTTTTGGGCATGCTTCCCCTCCAGGCTTTAAAACGCGTCTGCTAGAGGAAAGTTTCCCCACCCTTATAAATGGTGGTTTAGGTTTCCACACCACACCCTTATAAATGATGGTTGGTTTAGGTTTCCACACCATCCAGGCTTTAAAACGCGTCTGCTAGAGGAAAGTTTCCCCACCCTTATAAATGGTGGTTTAGGTTTCCACACCACACCCTTATAAATGATGGTTGGTTTAGGTTTCCACACCACACCCTTGTAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTCTGGCTCCTAGGAAACGTAAAGGTGTGGAAACTCTCCCTAGCATTTGCATTTTAAAAACCTTGAAGGGAAAGCTGAAAGAGGACAATACCGGCTAGCGGTGGGTTTCGGCGGTTACGAATGGTATCAGAGCTAGACACCAAGTAGTGTGTCAGCGAGACACTGAGTCCCAAGGGGGTGGACACCGGGCGGTGCATAGAGAGGACACTAGAGCTAGAAGGGGGTAGATTGTGAGATCCCACGTCGGTTGGAGAGCGAATCGAATATTGTTTACAAGTAGAAACCTCCCCAATAGATACATGTTTTCTTAAATGATAGAGACCCAAATTAACGAAAGCCAAAGGGACAATTCCAAAATAGCATTTAAACCTTTAAAACTCAAAGACTCTCATACAAATTTCATACTATACTAATCGTCTCTGTTTGTTTGTCAATATCCATTGATTTCTGTAATACATTCGGATTTTGTTATGAACTGAAGTTGCAGGAAATGAGGATTTGAATGTCTACTTCTACGACTACGAGTTCTATGATTCGACACGAGCTAAACATACTTGTGCGAACTAGCTACAGATTCTCTCTAAGGTAAAACCATTAGTTGACAGTTTGTTGTCGATTCACCGGCACGTATGTGCCTCTGCAGGGCCACTGGTTTCCGGTCACCGGGGTTGCCTGCAACCATGGGGAGAATCTGTTGGCTTCCTTGGATGTTTATGGGAGGGTAATTGTACGAGATCAAAGATGAGCTAGAACTTAGAATGATATATATGTGGGAATAGATTTCTGAATAGCTCTGTTTGCTTCCTCTTATCAACTTCAGATCATCATTCAGTATGAAAATTGATTGACAAAGAGAAAACAGGAGTTTCTTATATATACTTCCATCCATTTTCTACCAGTAGTTGATGATATGAAAGTTCATGATGAGTTCAACTATGAGACAAACTCGGGCAAAGTTTTTATTCATATTTACCAAGTGATATAGGTTATCATTAACAAGCAGAAGAAAATGATAACTCCTAACAAAATCTAAACCAGCCTACTGTATCTTCCAAGGACAAAAAAGCTTGAAATATGTTGATATGATATGCTTTCCTAGAAACTAAGTAAAATAAAGATTTAAGTATTTGCATCCAATTCTACTCTACCTTGTTTGATATGTACTCAAGAGCCATAAATCTATCTAATTTACGTGTTCTATGTGGTTACCCGATGTTGACAGACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAGATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGGTATAAATTAGGAACTTAGTATTGTAGTTTGAAGTTTTGATCTTGTCGATTACAGATCAATCATCAAGACAATATTTGAAAAGGTTGGTTATATATTGATGTAAATTGAGATACCTTTTGCAACACAGATCGTGAATTTGGAAAATGACAGGTTCCTTGCTGAAGATTTCCACAAGCTCCACTTGGAGTTCCAAAGCTGACAAATTTGATAGCTGAAATGAACTGCCTAGCTGCACAATGCAGGTTGATCTTAACCACATTCTGCTCATTCAATCCTCCATGGTTCTGATGAGTGTTTTTGATGACAGGGCGATACTCAGATGCCTCGGTACAAATGCTTGTAATTGATCTCTTTACAAGAGTGATCCCTGAAGGATTCCCGCCCATCTCCTCAAAAACCACAATTAAATTTCTTGATGGCATCAACCAAGATCGAGGAACGTGGTACCTAAATGATTAACATATCAAATAAAACGCAGAATTTAGTGTTCGTCCTATGTCCAATGTTTAGCATCTGTAAATGGTAGATGTAAAGAACTTGCCATTGTTGAGTCGGATGACCACACCCAGATTGGCATTTGTTTGGGCGGTATGTACCCGAGTAGCTGCAATCAGTGCAGTTTCCATTGGCATGGACAGTCCAGTATCTTCCAATATTCTTCCCGTTTATCCATACTTGACCCTTCTGCATACTACTCATGTCTAAAGCCAAAGGTTCGTCTCCTTCGGGCACATTGAAATAAGCCTGCAAGTTGAAGCAAAATAGTGTCAACAATGGTTCTCGAATCTGAACGATGATGAGAGTTATAGACTCTGTAGAAGAATGAAGAATTCTAGTTCTTCAGAACCATTGCAGTCAAGCTTCAACCATGTACCTTATACCAAGTAAGCGGCTGTGTGTTTTCTTTTACCGATGAATCCCATACCCAATCAACTGCTGGAATAGAGCTTAGAGAACCCAAGTTCATGGCTTCTCCTTCCAGACCAACCTGTCAAACAGGAAAAACATAAGGAAACTAGTGGAGTGCATAGAAACACTGAGAAATGTGGTTGCATTTGCAGACCTTATATGACCATGTCTGTCTAGATAAGTCCATCGTTCCCTTGTCCAGCCCATGTATAGCAACTGGTCCAAGCACTCCCATTTCTCTCATCTCAAAATGAGGACCGTTGTTCTTCATCCACCAACAAGGAAAAGAACATCAAACAAAGATAAACCAGAGTTGTGACAAACTTCATTTAGATTAAGATTTTTCATTTTCGTGAGATTAGAGCCCTAAGTATAACATTCTTAGCAACCATGAGAAGAGAGTTGCATAAAGAAGATGGACTGTTTGTTTCAAGTCTGATTTCAGAATTCTGATCAGGTAATTTACTTCTAGGAATTGATTAGTGAATCATAGTTCATATGATCAGGGACTAGAAAACTAACTGGCAATCCAGCAGCCATGCTTAACAGAGAAACTCTGTTTACTCCAGCTTGCAACTGAATTCTTCCCGTGAACTTAAATTTACTGCTGTCATGGTTCCCGAAGCTCGATCCTGCGTTGAGGAAAGGTATTGCCTAATCAGAATCAGCTCGGCAGAAAGGCATACACAAAAGCATAGAAGTTGAGGTAAGAGATTCGATGATTCACCAGTTAGCTTTCCATTAATGAATACATGCATGCCATGACCAGTTGATCCCGCAACGAGAGTAGGAAGCCTCCCTCCACGCAGGAAGGATTCGTTTGAATCTACCTTGACACTGGAAAAATCCAGGTAATAAATATGTTTTCATTATGTAATCGTTCTCTATGTTATATATATAATCTAAGCACCATTTTTACCTGGTTGTATACCAAAGATAGTCGGTGGTGTCTCTAGTGATGTTTAGTTGCTCCAAAAGACCACCATATGACATCAATGGACCATCTTCAATCGAAGATATGTCTTCATTAAAAGTCTCCCACGAAAACGGTTCAACATTCGTCGGTGAAAATGACATCTGGTTTATTTGAACTTCAACCTGGAGCATGAAGAATTAGGATTTACCTTGGTATGTACAATAAGATTGCATTCCTGATTTGGAAGATAATCTGAGTGATATAAACCAAGGCATCAACATGCAATATAAACTTCAAGAAAGATATGAAAAAAATGAAGTTTGCATATTATGCTTCTTAAGCCATGAGTTTGTTCCTTTACATTTCTCATGTTTAGATTTACATGTTAGGATCATTCAAGTAGTCTTGAC

mRNA sequence

GCCATTTCATGAGAAAGGGTTGCGGTTGCTGGAACACACCGACGGAGCTCCGATGATGTCGATCCAGTGTACATATTATAAATAATTTGAGTATTGATCGGGCACGGTCTGGATGTAGCACCATTAGCCGTCCGGTCATCGGGGGGGGAATTGAGGAACCTAGCTGTTTGATCTTCGATGGCTGACTTGTAAAAAATGTTAACGACTATGGTGGAGCAAAGGACCGAGGCTTCTAGATCAACGAAAGAAGGAGAGGAAGCGAAACAGAAGAAAGCTGTGGTTTGGGAACCAATCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTGGTCGTAAAACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAGATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGATCAATCATCAAGACAATATTTGAAAAGGTTCCTTGCTGAAGATTTCCACAAGCTCCACTTGGAGTTCCAAAGCTGACAAATTTGATAGCTGAAATGAACTGCCTAGCTGCACAATGCAGGGCGATACTCAGATGCCTCGGTACAAATGCTTGTAATTGATCTCTTTACAAGAGTGATCCCTGAAGGATTCCCGCCCATCTCCTCAAAAACCACAATTAAATTTCTTGATGGCATCAACCAAGATCGAGGAACGTGGTACCTAAATGATTAACATATCAAATAAAACGCAGAATTTAGTGTTCGTCCTATGTCCAATGTTTAGCATCTGTAAATGGTAGATGTAAAGAACTTGCCATTGTTGAGTCGGATGACCACACCCAGATTGGCATTTGTTTGGGCGGTATGTACCCGAGTAGCTGCAATCAGTGCAGTTTCCATTGGCATGGACAGTCCAGTATCTTCCAATATTCTTCCCGTTTATCCATACTTGACCCTTCTGCATACTACTCATGTCTAAAGCCAAAGGTTCGTCTCCTTCGGGCACATTGAAATAAGCCTGCAAGTTGAAGCAAAATAGTGTCAACAATGGTTCTCGAATCTGAACGATGATGAGAGTTATAGACTCTGTAGAAGAATGAAGAATTCTAGTTCTTCAGAACCATTGCAGTCAAGCTTCAACCATGTACCTTATACCAAGTAAGCGGCTGTGTGTTTTCTTTTACCGATGAATCCCATACCCAATCAACTGCTGGAATAGAGCTTAGAGAACCCAAGTTCATGGCTTCTCCTTCCAGACCAACCTGTCAAACAGGAAAAACATAAGGAAACTAGTGGAGTGCATAGAAACACTGAGAAATGTGGTTGCATTTGCAGACCTTATATGACCATGTCTGTCTAGATAAGTCCATCGTTCCCTTGTCCAGCCCATGTATAGCAACTGGTCCAAGCACTCCCATTTCTCTCATCTCAAAATGAGGACCGTTGTTCTTCATCCACCAACAAGGAAAAGAACATCAAACAAAGATAAACCAGAGTTGTGACAAACTTCATTTAGATTAAGATTTTTCATTTTCGTGAGATTAGAGCCCTAAGTATAACATTCTTAGCAACCATGAGAAGAGAGTTGCATAAAGAAGATGGACTGTTTGTTTCAAGTCTGATTTCAGAATTCTGATCAGCTTGCAACTGAATTCTTCCCGTGAACTTAAATTTACTGCTGTCATGGTTCCCGAAGCTCGATCCTGCGTTGAGGAAAGGTATTGCCTAATCAGAATCAGCTCGGCAGAAAGGCATACACAAAAGCATAGAAGTTGAGGTAAGAGATTCGATGATTCACCAGTTAGCTTTCCATTAATGAATACATGCATGCCATGACCAGTTGATCCCGCAACGAGAGTAGGAAGCCTCCCTCCACGCAGGAAGGATTCGTTTGAATCTACCTTGACACTGGAAAAATCCAGATAGTCGGTGGTGTCTCTAGTGATGTTTAGTTGCTCCAAAAGACCACCATATGACATCAATGGACCATCTTCAATCGAAGATATGTCTTCATTAAAAGTCTCCCACGAAAACGGTTCAACATTCGTCGGTGAAAATGACATCTGGTTTATTTGAACTTCAACCTGGAGCATGAAGAATTAGGATTTACCTTGGTATGTACAATAAGATTGCATTCCTGATTTGGAAGATAATCTGAGTGATATAAACCAAGGCATCAACATGCAATATAAACTTCAAGAAAGATATGAAAAAAATGAAGTTTGCATATTATGCTTCTTAAGCCATGAGTTTGTTCCTTTACATTTCTCATGTTTAGATTTACATGTTAGGATCATTCAAGTAGTCTTGAC

Coding sequence (CDS)

ATGTTAACGACTATGGTGGAGCAAAGGACCGAGGCTTCTAGATCAACGAAAGAAGGAGAGGAAGCGAAACAGAAGAAAGCTGTGGTTTGGGAACCAATCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTGGTCGTAAAACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAGATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGATCAATCATCAAGACAATATTTGAAAAGGTTCCTTGCTGAAGATTTCCACAAGCTCCACTTGGAGTTCCAAAGCTGA

Protein sequence

MLTTMVEQRTEASRSTKEGEEAKQKKAVVWEPIIVSCSIGRLKPGFVVVKQLQQIVFCLDLDMDRLRRCSLVRLPGISVDQHIAGKDDQSSRQYLKRFLAEDFHKLHLEFQS

Homology

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BLAST of CmoCh02G003790 vs. NCBI nr
Match: KAG7035066.1 (hypothetical protein SDJN02_01861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-35
Identity = 87/113 (76.99%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MLTTMVEQRTEASRSTKEGEEAKQKKAVVWEPIIVSCSIGRLKPGFVVVK---------- 60
           MLTTMVEQRTEASRSTKEGEEAKQKKAVVWEPIIVSCSIGRLKPGFVVVK          
Sbjct: 1   MLTTMVEQRTEASRSTKEGEEAKQKKAVVWEPIIVSCSIGRLKPGFVVVKATGFRSPGLP 60

Query: 61  ----------------QLQQIVFCLDLDMDRLRRCSLVRLPGISVDQHIAGKD 88
                           QLQQIVFCLDLDMDRLRRCSLVRLPGISVDQHIAGKD
Sbjct: 61  ATMGRICWLPWMFMGGQLQQIVFCLDLDMDRLRRCSLVRLPGISVDQHIAGKD 113

The following BLAST results are available for this feature:

BLAST of CmoCh02G003790 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G003790 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G003790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035066.1	3.9e-35	76.99	hypothetical protein SDJN02_01861, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh02G003790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003790.1	CmoCh02G003790.1	mRNA