CmoCh02G003520 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G003520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S12
Location	Cmo_Chr02: 1761045 .. 1765427 (+)
RNA-Seq Expression	CmoCh02G003520
Synteny	CmoCh02G003520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCATGGGGGGTTGCTTTTATTGTGTCGCTTAAATTATATAGGAACTCTTGAACCCAAGAGTTAAGAATAACAAGTTCTTCATTACCAAGAATAGAATAACCACTTAGAATAATGAAACAGATTATATTTGTCGATGAATACATCACTTTTGCACTAATTTCTCAAAAAACTTTCTCTGTGATAATCAAAACCGAACCAAAACCGATCGGTTCAAACTGATTTATGTAAAAAGTTAACTCAGCCGGCGGTTTTGCTAAACCGGATATTGTGGTTCGATTCTCGATTTGGATAAACCGAACACCGGCCGTATAGGGCTAGGTCACCAACCAGTTGGGCTTTTCCATTCCTCTTCTTCTTCATAAAAACCCCTCACTTCTTCTTGACCTAATTTGCTGCGCCGTTGATTCTTCACTTCGATCGGTATCTACGCTGTTCTCAAGTCGTCTCCTATCCCTATCCTTCCTCGCTTCTTCTTCTTCGATTGTGCCTCTGTTTAAATTGTCTGATTGTTTTTTTGCGTTTGTTTTGCGACAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCGTGAGTGAAAATTTGTTTAGAAGCGTCCATTGGTTGTTTTTTCTTTTATAATTTAAGTTGTTGAATGCCGCTCCTTCTTTCGTTTTTGTTTGCTTCGTTTGAAATATATTAGTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGGTGACTAATCTAGATTGTGAATAAGAAAAAGTTGTGAGTTGAAATTTGATTGGCGAAGGTGACGGAATAATAAATGTTGATGCCTTTAGAGATGAAAATTATATGTTTTGGTTTGAATCATATGAAATATGGAACTTTAAATGAAAATGTGATTTGTTACATTACTTTGTTGGACATTGAAAGATCACGACTGAAGAGTCAAGATCTTATGCTTGTTTAGGAGTGAAATACTATTGAGGTTTCTTTTGTTATTGGCATAGTATTTGCTGCAAATGGCTATATATTGCCTCCAATTGCTTGACAAATCCTTTTTAACTCGATTTCTTATGCAGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTGTAAGTGTCTAATCTTATTTAGCCATCGAGATAAAAATGGCTTTTCTTTTGATCATCTGTCATCACTTGTATTGTATTTATCCTACTATGATTGAATATACACCTCTCAATACTAGGCTACATGTTTTTACCCGTTAATACTTGGCTGCTTTACATGCTCGGGATCGTATTTACATACTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCCGTTATTACTTAGCTGCTTTACATGTTCAGGATCGTATTTACATAACCTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCCGTTAATACTTAGCTGCTTTACATGTTCGGGATCGTATTTACACAACCTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCTGTTAATAATTAGCTGCTTTACATGTTTGGTATCATATTTGCATAACCTCTTCAAGCACAATCAAGAAGAAGCTTTCTTTTTCACATGCCCTGTCAACACCACGATCGGGGAAGCTCATTTTTGCTTGTATATTGGCATTATACACCATGAATTTGAGTTCGATTTCAAGATGTAATTGATGTGCAGATCCCAATACTACCATCATAAGATTTCCCCCATCTTACTTCAGGATAATAAGTTATTGTGTTGGTCTAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGTACGTTGTATGATGATGCCCATCACTTCTGGAGCAAATGTTCTGTTCTCTGAACCATTTTTGTTTACTTAAAATTTGAATTCCTATCTCCAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTATGTCAATCACTAAGAAAGTTTTTGATCTTTAGTAATGTTTAGATTGGTTGGTTCCCTGTTGCTGTTGAACACGTTTCTTCTACCCTATAATGCTTTTCTTTGTTTCTATTGATTGGAAAGATTTTGGGCAAACAGAACACAAGTTATTTATCAAGAGTCTCCTTGCCAAGGGTGAAAGGGAATTGAATTTTATCATCTCTTTATGTTGAGTTACTAAGCTATACCTATTTTCGTTTCTGAAGATTAATGCAACAGTGTCTAGTATAGTTTTTCTTTTCCTATAAAACTCAATATGTTATCATTCATATTAGTCGATGCAGTTGAGGTTCATTCGTATATTAATTTGAATTAGACAGCATTCTAAAATTTGATTATCTTGTGAGAAAGGTAGTAAAGGAATCCCAACTTAGGGGTTTAGTTGAGATATTTTTAGATTTAATTCAATTGTTCGAATGGAATTGAACTTTTTATTTTCTTTATTTAAGTAATCTATATTAAATAATTTATCAAATTCTTTGTTTGAGTCATTTATTTAAGCTTTTTTAAATAAATTGTTAATATAGAAAATATTTATTTATTTATTTATTTTTAAACATTGAAATATTTGAAATCTAATTTTAATATATAGTTTGAAAAATTAGATTTCGAAGATTGAATAATCGAAAAAACAATTATAGAATTAAATAAAGTATAATAAACATACATACATGTAATACATGTAAGTACATCGTTAACAAAAAAAAAATTTTAAAATTAAAAAAATTAACAATGGTTTAATCGATTTTAATTTTAGGGAAATTCACAAGAATTTAACCCATATAATTTGAGCCTCTCAGTTGGAACTGCGACGGTGGTTCGGAGTGTCGTTGACCTGCTAAATGCCACAACATTGTCGGTGCGATTATTATTTAGGAAGTTTCTGAGATCCTTCAGTCAACTTCGAAATTAGTCAAACCCCTAGTTGTAGCTTTTGTTGCTGTGTCAAACCCCTAGTTGGATGGTTAAATCCAAATTCTTCTTCAGCTCTGTTCAGCAATCTGATAAATGAAGGATGGTTTAAATATGATATCCGCACCACGAATCGCTTACTTTTGATCTCTTCAAGATTTTTAAAACACGTCTGCTAAGGAGAGGTTTTTATATCTTTATAAAAAATGTTTCATTCTCCTCTCTCAATTAATGTGAGATCTCACAATCCACCTTTCCTTCAAGGTCCAGCGTCCCGCTGGCACTTGTTTCTCTCTCCAATCGATGTGGTATCTCAAAATCCACCCCTCTTCAAGGCTCAGCGTCTTCGCTGGCACACCGTTCGGTGTCTGGCTCTAATACCAATTGTAACGGCTCAAGCCCACCGTTGGCAGATATTGTCCTCTTTGGACTTTCCCTCTCAGGTTTCCCCTCGTATTTGTAAAATGCATCTATTAGGGAGAGGTTCACACACCTTTATAAAGAACGTTTCTTTCTCCTCCTCTAACAATCGTTCCTCTCTCCAATCAATGTAGTATCACACGCCATGTTCGTAATCGATTCAAGTGATAGAAAAATAATGAGTTTGACTGGTTTTTCTCTGAATGAGAATGTGTTGATATTAGGTGTGGATTTATAGAATGAACGAAGAGTAGATGTGCTTTATTAAAGAAGACCCACTTCATCAAATACTCACATGGGATTGCTAACCAATATCTTCACCATATTTTGGTAGGGAGACCCCCTCTTGCCCCAAAAAAAGGAAGCCAAAGACCCAACAAATGGCCAAGAAAATTTCAAAACTAAATGGCAGATCTGTTTGACAAGCTTTTCCTCAACAAGTTTCTGTTTCAATAGACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG

mRNA sequence

ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG

Coding sequence (CDS)

ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG

Protein sequence

MSLPWYRVHTVVLNDPDRLFSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGRRKELQIKKKNVSLSTMPCFCNVESEACDKRFECDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHTMNSENRLEFQCKNQTASQILSVVAIKDAVVSPA

Homology

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BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-54
Identity = 101/127 (79.53%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 100 VEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPD 159
           VEAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPD
Sbjct: 13  VEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPD 72

Query: 160 YVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEA 219
           YVKLVKALCAEH+V+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E 
Sbjct: 73  YVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEG 132

Query: 220 LHIVQKH 227
           L+IVQ++
Sbjct: 133 LNIVQQY 139

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BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.0e-49
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]

BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-48
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 0


Query: 94  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 153
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 154 VLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 213
           VL EDCNQPDYVKLVKALCA+H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 214 VKDFGEDHEALHIVQKH 227
           VKDFGE+  AL IV KH
Sbjct: 124 VKDFGEETTALSIVNKH 140

[Close]

BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.6e-37
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 0


Query: 106 ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 165
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 166 ALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 225
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 226 HTMNSENRLEFQCK 240
           +         F+CK
Sbjct: 127 Y---------FKCK 131

[Close]

BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.6 bits (392), Expect = 7.6e-37
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 0


Query: 106 ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 165
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 166 ALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 225
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 226 HTMNSENRLEFQCK 240
           +         F+CK
Sbjct: 127 Y---------FKCK 131

[Close]

BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1G761 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.2e-69
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1L207 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111499681 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 4.6e-69
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPM+IETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMNIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1JGV5 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 6.0e-69
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVV+EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1FU69 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.0e-68
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAV+VEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVLVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1KYK1 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.3e-68
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDY+KLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  ++
Sbjct: 124 GEDHEALHIVQKHVSSN 140

[Close]

BLAST of CmoCh02G003520 vs. NCBI nr
Match: KAG6571063.1 (40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 2.5e-69
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 89  KRFECDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 148
           ++   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 46  RKMSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 105

Query: 149 CVLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 208
           CVLGEDCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 106 CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 165

Query: 209 VVKDFGEDHEALHIVQKHTMNS 231
           VVKDFGEDHEALHIVQKH  +S
Sbjct: 166 VVKDFGEDHEALHIVQKHVSSS 187

[Close]

BLAST of CmoCh02G003520 vs. NCBI nr
Match: XP_022947564.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022947565.1 40S ribosomal protein S12-like [Cucurbita moschata] >XP_023533236.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023533237.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >KAG6605029.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 2.5e-69
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmoCh02G003520 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.2 bits (692), Expect = 9.5e-69
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmoCh02G003520 vs. NCBI nr
Match: XP_023007085.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 271.2 bits (692), Expect = 9.5e-69
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPM+IETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMNIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmoCh02G003520 vs. NCBI nr
Match: XP_022986724.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-68
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVV+EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-51
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]

BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-51
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]

BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-51
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]

BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-49
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 0


Query: 94  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 153
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 154 VLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 213
           VL EDCNQPDYVKLVKALCA+H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 214 VKDFGEDHEALHIVQKH 227
           VKDFGE+  AL IV KH
Sbjct: 124 VKDFGEETTALSIVNKH 140

[Close]

BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-49
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 0


Query: 94  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 153
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 154 VLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 213
           VL EDCNQPDYVKLVKALCA+H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 214 VKDFGEDHEALHIVQKH 227
           VKDFGE+  AL IV KH
Sbjct: 124 VKDFGEETTALSIVNKH 140

The following BLAST results are available for this feature:

BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	1.1e-54	79.53	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	1.0e-49	75.20	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	1.5e-48	72.26	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	7.6e-37	55.22	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	7.6e-37	55.22	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of CmoCh02G003520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G761	1.2e-69	97.81	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=...	[more]
A0A6J1L207	4.6e-69	97.08	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111499681 PE=3 SV=1	[more]
A0A6J1JGV5	6.0e-69	96.35	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1	[more]
A0A6J1FU69	1.0e-68	96.35	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=...	[more]
A0A6J1KYK1	1.3e-68	95.62	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1	[more]

BLAST of CmoCh02G003520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571063.1	2.5e-69	93.66	40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022947564.1	2.5e-69	97.81	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022947565.1 40S ribosoma...	[more]
XP_023512603.1	9.5e-69	97.08	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007085.1	9.5e-69	97.08	40S ribosomal protein S12-like [Cucurbita maxima]	[more]
XP_022986724.1	1.2e-68	96.35	40S ribosomal protein S12-like [Cucurbita maxima]	[more]

BLAST of CmoCh02G003520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	7.3e-51	75.20	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	7.3e-51	75.20	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	7.3e-51	75.20	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	1.1e-49	72.26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	1.1e-49	72.26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 200..213 score: 81.17 coord: 175..196 score: 57.85 coord: 134..150 score: 48.13 coord: 120..133 score: 54.55
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 95..226
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 116..134
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..59 e-value: 4.5E-31 score: 108.1
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 116..209 e-value: 8.4E-27 score: 92.8
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 98..229 e-value: 3.9E-53 score: 180.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 109..226
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 95..226
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 3..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003520.1	CmoCh02G003520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0006412	translation
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0003735	structural constituent of ribosome