CmoCh02G003460 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G003460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	auxin-responsive protein SAUR24-like
Location	Cmo_Chr02: 1748006 .. 1748299 (-)
RNA-Seq Expression	CmoCh02G003460
Synteny	CmoCh02G003460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAGATCCTAAAGATGCAGTCAGGTTTTACCAAAAGTCAGTTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATTCAAAGAAAGCGGTTTTTGGTTCCAATTTCTTACTTAAACCATCCATCATTCCAAAAACTACTCAGCCATGCAGAGGAAGAGTTTGGCTTCCATCATCCACAAGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCTAGATTGCAAGTATCTTGA

mRNA sequence

ATGGGGATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAGATCCTAAAGATGCAGTCAGGTTTTACCAAAAGTCAGTTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATTCAAAGAAAGCGGTTTTTGGTTCCAATTTCTTACTTAAACCATCCATCATTCCAAAAACTACTCAGCCATGCAGAGGAAGAGTTTGGCTTCCATCATCCACAAGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCTAGATTGCAAGTATCTTGA

Coding sequence (CDS)

ATGGGGATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAGATCCTAAAGATGCAGTCAGGTTTTACCAAAAGTCAGTTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATTCAAAGAAAGCGGTTTTTGGTTCCAATTTCTTACTTAAACCATCCATCATTCCAAAAACTACTCAGCCATGCAGAGGAAGAGTTTGGCTTCCATCATCCACAAGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCTAGATTGCAAGTATCTTGA

Protein sequence

MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

Homology

[Close]

BLAST of CmoCh02G003460 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.5e-25
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 12 AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQKLLSHAEEEFGF 71
          AK+IL   +G   +    PKG +AVYVGE Q+KR+LVP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHPQGGLTIPCKEDAFIDLTSRLQ 96
           HP GGLTIPC ED FI++TSRLQ
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003460 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-24
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 17 KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQKLLSHAEEEFGFHHPQG 76
          K+ S  T +    PKG +AVYVGE Q+KR+LVPISYLN PSFQ LLS +EEEFGF HP G
Sbjct: 12 KILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 71

Query: 77 GLTIPCKEDAFIDLTSRLQ 96
          GLTIPC ED FI++TSR Q
Sbjct: 72 GLTIPCPEDTFINVTSRFQ 90

[Close]

BLAST of CmoCh02G003460 vs. ExPASy Swiss-Prot
Match: Q9FJF7 (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.2e-24
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 17 KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQKLLSHAEEEFGFHHPQG 76
          K+ S  T +    PKG +AVYVGE Q+KR+LVP+SYLN PSFQ LLS +E+EFGF HP G
Sbjct: 12 KILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMG 71

Query: 77 GLTIPCKEDAFIDLTSRLQ 96
          GLTIPC ED FI++TSRLQ
Sbjct: 72 GLTIPCHEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003460 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 17 KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQKLLSHAEEEFGFHHPQG 76
          K+ S  T +    PKG +AVYVGE Q+KR+LVP+SYL+ PSFQ LLS +EEEFGF HP G
Sbjct: 12 KILSRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMG 71

Query: 77 GLTIPCKEDAFIDLTSRLQ 96
          GLTIPC ED FI++TSRLQ
Sbjct: 72 GLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003460 vs. ExPASy Swiss-Prot
Match: Q9FJF6 (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 12 AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQKLLSHAEEEFGF 71
          AK+IL   +    +    PKG +AVYVGE Q+KR+LVP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSAAAVSAP---PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHPQGGLTIPCKEDAFIDLTSRL 95
           HP GGLTIPC ED FI++TSRL
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of CmoCh02G003460 vs. ExPASy TrEMBL
Match: A0A6J1G6T7 (auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC111451395 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.8e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003460 vs. ExPASy TrEMBL
Match: A0A6J1KZJ6 (auxin-responsive protein SAUR24-like OS=Cucurbita maxima OX=3661 GN=LOC111499688 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQ 
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQN 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003460 vs. ExPASy TrEMBL
Match: A0A6J1G6U1 (auxin-responsive protein SAUR23-like OS=Cucurbita moschata OX=3662 GN=LOC111451399 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.1e-47
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKEDAF+DLTSRL VS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLHVS 97

[Close]

BLAST of CmoCh02G003460 vs. ExPASy TrEMBL
Match: A0A6J1L212 (auxin-responsive protein SAUR24-like OS=Cucurbita maxima OX=3661 GN=LOC111499687 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.4e-47
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKEDA IDL SRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDALIDLASRLQVS 97

[Close]

BLAST of CmoCh02G003460 vs. ExPASy TrEMBL
Match: A0A6J1G7A6 (auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC111451398 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.0e-47
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHP FQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPLFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQG LTIPCKEDAFIDLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGSLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003460 vs. NCBI nr
Match: XP_022947571.1 (auxin-responsive protein SAUR24-like [Cucurbita moschata] >XP_022947572.1 auxin-responsive protein SAUR24-like [Cucurbita moschata] >KAG6605023.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.7 bits (509), Expect = 5.9e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003460 vs. NCBI nr
Match: XP_023533292.1 (auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200.3 bits (508), Expect = 7.7e-48
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKEDAF+DLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003460 vs. NCBI nr
Match: XP_023007091.1 (auxin-responsive protein SAUR24-like [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 2.2e-47
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQ 
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQN 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003460 vs. NCBI nr
Match: XP_022947576.1 (auxin-responsive protein SAUR23-like [Cucurbita moschata] >KAG6605026.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.2 bits (500), Expect = 6.5e-47
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKEDAF+DLTSRL VS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLHVS 97

[Close]

BLAST of CmoCh02G003460 vs. NCBI nr
Match: KAG6605017.1 (Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.2 bits (500), Expect = 6.5e-47
Identity = 95/97 (97.94%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPIS+LNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISFLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCKE+AFIDLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKENAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003460 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 118.2 bits (295), Expect = 3.6e-27
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGE-IQRKRFLVPISYLNHPSFQ 60
          M IR+  ++  +KQ+LK  S  + + + +PKGH+AVYVGE +Q++RF+VP++YL+HP FQ
Sbjct: 1  MAIRISRVLQSSKQLLKSLS-HSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 KLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 98
          KLL  AEEEFGF HP GGLTIPC E  FIDL SRL  S
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRLSTS 97

[Close]

BLAST of CmoCh02G003460 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 117.9 bits (294), Expect = 4.7e-27
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILK----MQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHP 60
          M IR+  ++  +KQIL+    + S  + S LDVPKG++AVYVGE   KRF+VP+SYL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSR 94
          SFQ LL  AEEEFGF HP GGLTIPC E+ FIDL SR
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

[Close]

BLAST of CmoCh02G003460 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-26
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MGIRLLSLVPHAKQILKMQSGFTKSQLD------VPKGHVAVYVG---EIQRKRFLVPIS 60
           MG+   ++    KQILK+ S   +++        VPKGHVAVYVG   E+++KRF+VPIS
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 61  YLNHPSFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFIDL-TSRLQ 96
           +LNHPSF++ LS AEEEFGF+HP GGLTIPC+E+ F+DL  SRLQ
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRLQ 105

[Close]

BLAST of CmoCh02G003460 vs. TAIR 10
Match: AT5G18080.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-26
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 12 AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQKLLSHAEEEFGF 71
          AK+IL   +G   +    PKG +AVYVGE Q+KR+LVP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHPQGGLTIPCKEDAFIDLTSRLQ 96
           HP GGLTIPC ED FI++TSRLQ
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003460 vs. TAIR 10
Match: AT5G18020.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-25
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 17 KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQKLLSHAEEEFGFHHPQG 76
          K+ S  T +    PKG +AVYVGE Q+KR+LVPISYLN PSFQ LLS +EEEFGF HP G
Sbjct: 12 KILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 71

Query: 77 GLTIPCKEDAFIDLTSRLQ 96
          GLTIPC ED FI++TSR Q
Sbjct: 72 GLTIPCPEDTFINVTSRFQ 90

The following BLAST results are available for this feature:

BLAST of CmoCh02G003460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK62	9.5e-25	65.48	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S...	[more]
Q9FJG0	3.6e-24	67.09	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S...	[more]
Q9FJF7	6.2e-24	65.82	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 S...	[more]
Q9FJG1	1.4e-23	65.82	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 S...	[more]
Q9FJF6	1.8e-23	63.86	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 S...	[more]

BLAST of CmoCh02G003460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6T7	2.8e-48	100.00	auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1KZJ6	1.1e-47	98.97	auxin-responsive protein SAUR24-like OS=Cucurbita maxima OX=3661 GN=LOC111499688...	[more]
A0A6J1G6U1	3.1e-47	96.91	auxin-responsive protein SAUR23-like OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1L212	5.4e-47	97.94	auxin-responsive protein SAUR24-like OS=Cucurbita maxima OX=3661 GN=LOC111499687...	[more]
A0A6J1G7A6	7.0e-47	97.94	auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]

BLAST of CmoCh02G003460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947571.1	5.9e-48	100.00	auxin-responsive protein SAUR24-like [Cucurbita moschata] >XP_022947572.1 auxin-...	[more]
XP_023533292.1	7.7e-48	98.97	auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007091.1	2.2e-47	98.97	auxin-responsive protein SAUR24-like [Cucurbita maxima]	[more]
XP_022947576.1	6.5e-47	96.91	auxin-responsive protein SAUR23-like [Cucurbita moschata] >KAG6605026.1 Auxin-re...	[more]
KAG6605017.1	6.5e-47	97.94	Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh02G003460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21210.1	3.6e-27	58.16	SAUR-like auxin-responsive protein family	[more]
AT4G38840.1	4.7e-27	59.79	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	2.3e-26	56.19	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	6.7e-26	65.48	SAUR-like auxin-responsive protein family	[more]
AT5G18020.1	2.6e-25	67.09	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 13..93 e-value: 7.3E-27 score: 93.4
None	No IPR available	PANTHER	PTHR31929:SF121	AUXIN-RESPONSIVE PROTEIN SAUR21-LIKE	coord: 1..95
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003460.1	CmoCh02G003460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin