CmoCh02G002940 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCATGGATGCCTACTACGAGAGTTCAAGTCGGTGGCGATGGCGATTGGAGCAATATTCTGTAAAATGAAGGATCAGCTCGCGTAGGGTCGTCGAATCTCCACTACCGGTTTGTCGGTTCGATTTCATCATGTGTATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGTCCGTCCAATTTTAATTACGTTCCTTTTCATTTTCTTGGGGGAATCGATCGATAGATTCAGACTTTGTAAAATCTCTTTGGTTTTCCCTTTTCAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGGTAAAGTGAATTTGGGTATGATTAGTTTCATAAAATTACTTTGAAAAATCATTGTTGTGCAGTGTTGTTACATCGAGATTAGTAATCTAGAGGAACAAACTGGAACTTGAATTCGTTGAAACGCCTGATTAACCTGTTCTGGTCGATTAAGTCTGGTTGAATTATATATTGGAATGCGTATGGAGGTACTGCTGCAAGCAGGACCTTGTGTGTAACCAAGAAGGAGCTGTTGGTTTTGTTTTAGGGTGCTGTGTACTCATGAATAACAATTACTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGAAAACCTTGGGATAACCCAGAGAGAATAATATCTGCTAGTGGTGGGTTTGGGCTGTTATGAATGGTATCTACAAAGGAGGATGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAATGAAATATTGTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTCTTAAAAACCTTGAGGGGAAGCCCGAAAGGCAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGACCGTTACAAATGGTGAATGAATTTTCTAACAATGGATGGAGATTGAGGATAGAACATGCTAGTTTTGTTTTGTTGTGAACTAGTGAAAAGGAAAAGTGAAAAGGAAAAGCTGGTTGAAATTACGAACAGTGGATGGAGATTGAAGATAGAACATGCTAGTTATGATTGAGCTGTTTACTTGGTAAACAGAAAAAGTGAAAAGGAAAAGATGATAGAAATTGCTAATGATGGATATGGAGATTGAATATAAAACATGCTACTTTTGTGTGTGGTGTTCTACCAGTGAACAGGAAAAGCTGATTGAAATTACTAATGGTGGATGAAGATCGAAGATAGAACATGCTATGCTAGTTTTGTTCGGGCCGTGTACTAGTGAATAGGAAAAGCTAATGATGGATGAAGATTGAAGATAGAACATGTTTGGACTTTGCTCTTGTCAATGAAAATAATGGTCATTCTTATAGAGAATAAGGGCATAGAAAGGACATAGTTTACACGCTTTAGAAAAGTGGATAGATATACGAACAACGTCGTCTTCAAGAAATACAAAGACAATTGAGTTGTAAGAGCCCAAACTCACCGCTAACAAATATTGTCCGCTTTGGACCGTTATGTATCGCGCCAACCTCATAGTTTTAAAACGCGTCTACTAGGGAGAAATTTCCACACCCTTATAAGGAATGTTTTGTTCCCCTCTCCAACCGATGTGGGATTTCACAATCCATCCTCGGCCAGTGTCCTTTTTGGAATTGTCAAGAGAGATTGAAACGACGCTGTACTTTCTAACTTTCAAACCAACCAAAATCTCCTAAGCTAGTAATAGAATTCTAGAACTTAAAGAACACACCTAAGAGCTCTATGAGATGATTATCTCATACAAGTAAGAGGGATTGAAAAAGACCCAAATGACTTCAGAAACCACCCTTCGTGCCTGTGGATTCCATTGAACTTATCCACTTTACAAACCGTAAGATCTGCGAGTCCCATCGTTGTCGTTTCAGTGAAATGCAAACAGAAAGTTGACGTTGGCAAAAGCTAACAAGACAGAATTAATAGCATTTGGAGTCATAGAATAATGATTCTCCTGTGTTTTTGTCTTGTCAGAGCAAGACAACTCCCCTCGACTTCGCCAAAGAAGTCGAAAAGGAAGCGCACCAGTACAACGGTTTCAACTTGATAATCGTCGACATTCCCTCGAAAACCATGTTTTATATCACCAACAGACCAATTAACAACAGCGACAGCCTTGTCACTGAGGTCCCCCCTGGCATTCATGTCCTCACAAATGCACAACTCGACTCTCCATGGCCCAAGGTAAGACACAAATGCACAACTCGACTCTCCATTCCCTAAATTAGCTAACGTGGGATTCCTTCCCAACAATCCTCAACATAACCTATCAGCTCATTCAAAAAATTTCTCGGTTTTTTAGGCACTGCGACTGGACCAGAGTTTGAGAGAGTTCGTGAACAAAAATGGCGACAGGGAACTTCCAGTAAAAGAGATGGTTGAAAAGCTAATGATCAACACAATTAAAGACGATGTGAGCTTGCTACCCGGCATCTATTCTCCTCGAAGGGAATATCAATACAGTTCCATATTCGTCGATACAGATTCCGAACTGGTAACAAAAAATATGATATCAATAGCTTTTTAAATGATATCCATGGAGAATCTGAAATGGGTTTGCTCCATTTTTTCTTAGGGACGTTATGGAACTGGAAGCATATCTGCTTTGTCTGTGAAGAACAGTGGGGAAGCTTCATTCTTTGAAAAGCATTTGGAGAACGATGCATGGATTGACAGCAGTTTTACCTTCCAGATTGAGAACTTCTGAATCCTTTTCGAGGTGAGTTCAAGTTCTTTAATGTTAAGCTTCTTTTTTTTCTGTGAATATAGAATCAAAAAGGGAAAGGGAAAACTCTTGAGTAAGAATTTATTGAAGAAGAAATCTGGAATCTTGAAAATATTAAGAACGAAGTTAAACATAGCTAATCAATACCCAAAATTCATAATTTTGAGCCTCTGTCTATACTCTCATGAGAGTTCGCCAAAACGGTGACGTTTTAGAAATTGGTTTCCAAGTTTCACGCCGGGTTCGACCACTGAACTAGCACACATGAGGGGGTTGCAAGCTCTGACTCCGCCATCGCCTACCATGAGTGTTTTCCTTCGGTTCTTCATCGTTAACCGATTTGTTTCCATTCCATACGTTTCGCTTCTGGCTGGCATGTGCCTATGCACGTGACTACCTCCCTCTCCATGGTTGTACTTAGTGTCGAAGATCCTCCCTCTGGTTAGTTTTCAAATCGTTGGACTATTTAGTACCTTCAATTCGAGTCTTCCTTCTCGAGTGTTTCTTGGTTGTGAATATCTGAATAGGACGTTTGTTCATGCTTATAAATCAAATTTAAAAGCATAGAAATCAGGTCACAAACTAATTATTATTTTTTTTTCTTCCTAATGTCTACGTTTTTTTTTTTCAAAAAATGGATACAATAAGTGGGCCCTTTTTTCTCGTTATTGGGCCCAATAAGTGGGCCGC GCCATGGATGCCTACTACGAGAGTTCAAGTCGGTGGCGATGGCGATTGGAGCAATATTCTGTAAAATGAAGGATCAGCTCGCGTAGGGTCGTCGAATCTCCACTACCGGTTTGTCGGTTCGATTTCATCATGTGTATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGAGCAAGACAACTCCCCTCGACTTCGCCAAAGAAGTCGAAAAGGAAGCGCACCAGTACAACGGTTTCAACTTGATAATCGTCGACATTCCCTCGAAAACCATGTTTTATATCACCAACAGACCAATTAACAACAGCGACAGCCTTGTCACTGAGGTCCCCCCTGGCATTCATGTCCTCACAAATGCACAACTCGACTCTCCATGGCCCAAGGCACTGCGACTGGACCAGAGTTTGAGAGAGTTCGTGAACAAAAATGGCGACAGGGAACTTCCAGTAAAAGAGATGGTTGAAAAGCTAATGATCAACACAATTAAAGACGATGTGAGCTTGCTACCCGGCATCTATTCTCCTCGAAGGGAATATCAATACAGTTCCATATTCGTCGATACAGATTCCGAACTGGGACGTTATGGAACTGGAAGCATATCTGCTTTGTCTGTGAAGAACAGTGGGGAAGCTTCATTCTTTGAAAAGCATTTGGAGAACGATGCATGGATTGACAGCAGTTTTACCTTCCAGATTGAGAACTTCTGAATCCTTTTCGAGAAATTGGTTTCCAAGTTTCACGCCGGGTTCGACCACTGAACTAGCACACATGAGGGGGTTGCAAGCTCTGACTCCGCCATCGCCTACCATGAGTGTTTTCCTTCGGTTCTTCATCGTTAACCGATTTGTTTCCATTCCATACGTTTCGCTTCTGGCTGGCATGTGCCTATGCACGTGACTACCTCCCTCTCCATGGTTGTACTTAGTGTCGAAGATCCTCCCTCTGGTTAGTTTTCAAATCGTTGGACTATTTAGTACCTTCAATTCGAGTCTTCCTTCTCGAGTGTTTCTTGGTTGTGAATATCTGAATAGGACGTTTGTTCATGCTTATAAATCAAATTTAAAAGCATAGAAATCAGGTCACAAACTAATTATTATTTTTTTTTCTTCCTAATGTCTACGTTTTTTTTTTTCAAAAAATGGATACAATAAGTGGGCCCTTTTTTCTCGTTATTGGGCCCAATAAGTGGGCCGC ATGTGTATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGAGCAAGACAACTCCCCTCGACTTCGCCAAAGAAGTCGAAAAGGAAGCGCACCAGTACAACGGTTTCAACTTGATAATCGTCGACATTCCCTCGAAAACCATGTTTTATATCACCAACAGACCAATTAACAACAGCGACAGCCTTGTCACTGAGGTCCCCCCTGGCATTCATGTCCTCACAAATGCACAACTCGACTCTCCATGGCCCAAGGCACTGCGACTGGACCAGAGTTTGAGAGAGTTCGTGAACAAAAATGGCGACAGGGAACTTCCAGTAAAAGAGATGGTTGAAAAGCTAATGATCAACACAATTAAAGACGATGTGAGCTTGCTACCCGGCATCTATTCTCCTCGAAGGGAATATCAATACAGTTCCATATTCGTCGATACAGATTCCGAACTGGGACGTTATGGAACTGGAAGCATATCTGCTTTGTCTGTGAAGAACAGTGGGGAAGCTTCATTCTTTGAAAAGCATTTGGAGAACGATGCATGGATTGACAGCAGTTTTACCTTCCAGATTGAGAACTTCTGA MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNGRVAFLTNFREVELLPQAKSRGELPVRFLKSKTTPLDFAKEVEKEAHQYNGFNLIIVDIPSKTMFYITNRPINNSDSLVTEVPPGIHVLTNAQLDSPWPKALRLDQSLREFVNKNGDRELPVKEMVEKLMINTIKDDVSLLPGIYSPRREYQYSSIFVDTDSELGRYGTGSISALSVKNSGEASFFEKHLENDAWIDSSFTFQIENF Homology
BLAST of CmoCh02G002940 vs. ExPASy Swiss-Prot
Match: Q29RZ5 (Transport and Golgi organization protein 2 homolog OS=Bos taurus OX=9913 GN=TANGO2 PE=2 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 4.6e-29 Identity = 92/286 (32.17%), Postives = 141/286 (49.30%), Query Frame = 0
BLAST of CmoCh02G002940 vs. ExPASy Swiss-Prot
Match: P54797 (Transport and Golgi organization 2 homolog OS=Mus musculus OX=10090 GN=Tango2 PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.9e-27 Identity = 90/286 (31.47%), Postives = 143/286 (50.00%), Query Frame = 0
BLAST of CmoCh02G002940 vs. ExPASy Swiss-Prot
Match: Q6ICL3 (Transport and Golgi organization protein 2 homolog OS=Homo sapiens OX=9606 GN=TANGO2 PE=2 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.5e-27 Identity = 91/287 (31.71%), Postives = 145/287 (50.52%), Query Frame = 0
BLAST of CmoCh02G002940 vs. ExPASy TrEMBL
Match: A0A6J1G6B2 (transport and Golgi organization protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451268 PE=4 SV=1) HSP 1 Score: 550.1 bits (1416), Expect = 5.2e-153 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
BLAST of CmoCh02G002940 vs. ExPASy TrEMBL
Match: A0A6J1I2B1 (transport and Golgi organization protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469854 PE=4 SV=1) HSP 1 Score: 540.0 bits (1390), Expect = 5.4e-150 Identity = 261/266 (98.12%), Postives = 262/266 (98.50%), Query Frame = 0
BLAST of CmoCh02G002940 vs. ExPASy TrEMBL
Match: A0A6J1CII2 (transport and Golgi organization 2 homolog OS=Momordica charantia OX=3673 GN=LOC111011269 PE=4 SV=1) HSP 1 Score: 478.0 bits (1229), Expect = 2.5e-131 Identity = 228/265 (86.04%), Postives = 245/265 (92.45%), Query Frame = 0
BLAST of CmoCh02G002940 vs. ExPASy TrEMBL
Match: A0A6A1UGL1 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G025184 PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 4.7e-101 Identity = 178/266 (66.92%), Postives = 215/266 (80.83%), Query Frame = 0
BLAST of CmoCh02G002940 vs. ExPASy TrEMBL
Match: A0A6A1UHJ9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G025146 PE=4 SV=1) HSP 1 Score: 376.3 bits (965), Expect = 1.0e-100 Identity = 178/265 (67.17%), Postives = 214/265 (80.75%), Query Frame = 0
BLAST of CmoCh02G002940 vs. NCBI nr
Match: XP_022947387.1 (transport and Golgi organization protein 2 homolog [Cucurbita moschata] >XP_022947388.1 transport and Golgi organization protein 2 homolog [Cucurbita moschata]) HSP 1 Score: 550.1 bits (1416), Expect = 1.1e-152 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
BLAST of CmoCh02G002940 vs. NCBI nr
Match: KAG6604975.1 (Transport and Golgi organization protein 2-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 546.6 bits (1407), Expect = 1.2e-151 Identity = 264/266 (99.25%), Postives = 264/266 (99.25%), Query Frame = 0
BLAST of CmoCh02G002940 vs. NCBI nr
Match: XP_022971076.1 (transport and Golgi organization protein 2 homolog [Cucurbita maxima] >XP_022971077.1 transport and Golgi organization protein 2 homolog [Cucurbita maxima]) HSP 1 Score: 540.0 bits (1390), Expect = 1.1e-149 Identity = 261/266 (98.12%), Postives = 262/266 (98.50%), Query Frame = 0
BLAST of CmoCh02G002940 vs. NCBI nr
Match: XP_023532494.1 (transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo] >XP_023532495.1 transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo] >XP_023532496.1 transport and Golgi organization protein 2 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 537.7 bits (1384), Expect = 5.6e-149 Identity = 259/265 (97.74%), Postives = 261/265 (98.49%), Query Frame = 0
BLAST of CmoCh02G002940 vs. NCBI nr
Match: XP_022140668.1 (transport and Golgi organization 2 homolog [Momordica charantia]) HSP 1 Score: 478.0 bits (1229), Expect = 5.2e-131 Identity = 228/265 (86.04%), Postives = 245/265 (92.45%), Query Frame = 0
BLAST of CmoCh02G002940 vs. TAIR 10
Match: AT4G38260.1 (Protein of unknown function (DUF833) ) HSP 1 Score: 313.5 bits (802), Expect = 1.6e-85 Identity = 149/270 (55.19%), Postives = 195/270 (72.22%), Query Frame = 0
BLAST of CmoCh02G002940 vs. TAIR 10
Match: AT1G20680.2 (Protein of unknown function (DUF833) ) HSP 1 Score: 115.9 bits (289), Expect = 4.9e-26 Identity = 87/274 (31.75%), Postives = 136/274 (49.64%), Query Frame = 0
BLAST of CmoCh02G002940 vs. TAIR 10
Match: AT1G20730.1 (Protein of unknown function (DUF833) ) HSP 1 Score: 109.0 bits (271), Expect = 5.9e-24 Identity = 93/272 (34.19%), Postives = 133/272 (48.90%), Query Frame = 0
BLAST of CmoCh02G002940 vs. TAIR 10
Match: AT1G20740.1 (Protein of unknown function (DUF833) ) HSP 1 Score: 103.6 bits (257), Expect = 2.5e-22 Identity = 85/247 (34.41%), Postives = 123/247 (49.80%), Query Frame = 0
BLAST of CmoCh02G002940 vs. TAIR 10
Match: AT1G20680.1 (Protein of unknown function (DUF833) ) HSP 1 Score: 88.2 bits (217), Expect = 1.1e-17 Identity = 77/265 (29.06%), Postives = 125/265 (47.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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