CmoCh02G002360 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G002360
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNuclear transcription factor Y subunit B-3
LocationCmo_Chr02: 1114783 .. 1115477 (+)
RNA-Seq ExpressionCmoCh02G002360
SyntenyCmoCh02G002360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTTCTCAACCCTGTTTGTTTCCTGAGAAAATATTTCACCTTTCTTTCCCGAGAAAATTACTAGGATCAAATGGCTGATCTTTCTTTGAGAAACCCATTAATTTGGTTAATTTCTTTCACTTTTTTCCTCCTCTCTTGGGGTTTTTTGGGATTCTCATCTCTTTTACTTACCTCAATACCTCTGATTATATCTATGCTTTATTTTTCAATCGCCAAAAGAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGACGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

mRNA sequence

ATGGAGTCTTTCTCAACCCTAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGACGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

Coding sequence (CDS)

ATGGAGTCTTTCTCAACCCTAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGACGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

Protein sequence

MESFSTLNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK
Homology
BLAST of CmoCh02G002360 vs. ExPASy TrEMBL
Match: A0A6J1JE34 (uncharacterized protein LOC111483694 OS=Cucurbita maxima OX=3661 GN=LOC111483694 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.1e-42
Identity = 107/169 (63.31%), Postives = 132/169 (78.11%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTT 62
           S S  N FP+ K +    +EE+KE+TF+S         S+PT   LL ESECADDNFTTT
Sbjct: 59  SISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTT 118

Query: 63  EDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSC 122
           E+SEV W  FDR  AK L +SD+GSISDEESLIEI+LPTGHYV+H+  D+++++DDMS C
Sbjct: 119 EESEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHK-SDDDDDKDDMSFC 178

Query: 123 YRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           +++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 179 FQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 225

BLAST of CmoCh02G002360 vs. ExPASy TrEMBL
Match: A0A6J1FUA8 (uncharacterized protein LOC111448485 OS=Cucurbita moschata OX=3662 GN=LOC111448485 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.1e-42
Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTT 62
           S S  N FP+ K +    ++E+KE+TF+S         S+PT   LL ESECADDNFTTT
Sbjct: 59  SISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTT 118

Query: 63  EDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEF-EDEEEEEDDMSS 122
           E+SEV W  FDR  A  L +SD+GSISDEESLIEI+LPTGHYVSH+  +D++++EDDMS 
Sbjct: 119 EESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDDEDDMSF 178

Query: 123 CYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 179 CFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 227

BLAST of CmoCh02G002360 vs. ExPASy TrEMBL
Match: A0A0A0KCP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-41
Identity = 107/169 (63.31%), Postives = 130/169 (76.92%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI-----EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTT 62
           S S  NS PI KF+     EE++K++TF SD       S+PT   LL ESECADDNFTTT
Sbjct: 7   SISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTT 66

Query: 63  EDSEVGWGAFD-RF-KAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMS 122
           E+SEV W  FD RF K +   +SD+GSISDEESLIEI+LPTGHYVS +F+D +E+EDD+S
Sbjct: 67  EESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDDIS 126

Query: 123 SCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
             Y++L +F  Q+KNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 127 FRYQKLTDF--QRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 173

BLAST of CmoCh02G002360 vs. ExPASy TrEMBL
Match: A0A5D3CJH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001550 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.3e-41
Identity = 107/173 (61.85%), Postives = 131/173 (75.72%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFT 62
           S S  +S PI+KF+       EE++KE+TF SD       S+PT   LL ESECADDNFT
Sbjct: 7   SISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECADDNFT 66

Query: 63  TTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE--DEEEEE 122
           TTE+SEV W  FD   +KA++  +SD+GSISDEESLIEI+LPTGHYVS +F+  DE+E+E
Sbjct: 67  TTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDE 126

Query: 123 DDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           DD    Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 127 DDTPFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 177

BLAST of CmoCh02G002360 vs. ExPASy TrEMBL
Match: A0A1S3CMD0 (uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.3e-41
Identity = 107/173 (61.85%), Postives = 131/173 (75.72%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFT 62
           S S  +S PI+KF+       EE++KE+TF SD       S+PT   LL ESECADDNFT
Sbjct: 60  SISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECADDNFT 119

Query: 63  TTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE--DEEEEE 122
           TTE+SEV W  FD   +KA++  +SD+GSISDEESLIEI+LPTGHYVS +F+  DE+E+E
Sbjct: 120 TTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDE 179

Query: 123 DDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           DD    Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 180 DDTPFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 230

BLAST of CmoCh02G002360 vs. NCBI nr
Match: KAG6604917.1 (hypothetical protein SDJN03_02234, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026997.1 hypothetical protein SDJN02_11005, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.9 bits (777), Expect = 8.2e-79
Identity = 156/160 (97.50%), Postives = 157/160 (98.12%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAF 62
           S +  NSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAF
Sbjct: 5   SIAKRNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAF 64

Query: 63  DRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQ 122
           DRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQ
Sbjct: 65  DRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQ 124

Query: 123 KKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK 163
           KKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK
Sbjct: 125 KKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK 164

BLAST of CmoCh02G002360 vs. NCBI nr
Match: XP_038902685.1 (uncharacterized protein LOC120089322 [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-42
Identity = 109/173 (63.01%), Postives = 132/173 (76.30%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI--------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNF 62
           S S  NS PI+KF+        EE++K++TF SD       S+PT G LL ESECADDNF
Sbjct: 50  SISKRNSLPIQKFVQQVQEEEEEEDQKKLTFFSDHLKSSSVSAPTTGDLLSESECADDNF 109

Query: 63  TTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFED-EEEEE 122
           TTTE+SEV W  FD   +K    D+SD+GSISDEESLIEI+LPTGHYVSH+F+D ++E+E
Sbjct: 110 TTTEESEVEWPYFDHRSYKPNNPDRSDDGSISDEESLIEIALPTGHYVSHKFDDVDDEDE 169

Query: 123 DDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           D MS  Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 170 DGMSFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 220

BLAST of CmoCh02G002360 vs. NCBI nr
Match: XP_022943897.1 (uncharacterized protein LOC111448485 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-41
Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTT 62
           S S  N FP+ K +    ++E+KE+TF+S         S+PT   LL ESECADDNFTTT
Sbjct: 59  SISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTT 118

Query: 63  EDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEF-EDEEEEEDDMSS 122
           E+SEV W  FDR  A  L +SD+GSISDEESLIEI+LPTGHYVSH+  +D++++EDDMS 
Sbjct: 119 EESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDDEDDMSF 178

Query: 123 CYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 179 CFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 227

BLAST of CmoCh02G002360 vs. NCBI nr
Match: XP_022985724.1 (uncharacterized protein LOC111483694 [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-41
Identity = 107/169 (63.31%), Postives = 132/169 (78.11%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTT 62
           S S  N FP+ K +    +EE+KE+TF+S         S+PT   LL ESECADDNFTTT
Sbjct: 59  SISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTT 118

Query: 63  EDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSC 122
           E+SEV W  FDR  AK L +SD+GSISDEESLIEI+LPTGHYV+H+  D+++++DDMS C
Sbjct: 119 EESEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHK-SDDDDDKDDMSFC 178

Query: 123 YRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           +++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 179 FQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 225

BLAST of CmoCh02G002360 vs. NCBI nr
Match: KAG6570945.1 (hypothetical protein SDJN03_29860, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.9 bits (450), Expect = 6.8e-41
Identity = 106/170 (62.35%), Postives = 132/170 (77.65%), Query Frame = 0

Query: 3   SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTT 62
           S S  N FP+ K +    +EE+KE+TF+S         S+PT   LL ESECADDNFTTT
Sbjct: 5   SISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTT 64

Query: 63  EDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEF-EDEEEEEDDMSS 122
           E+SEV W  FDR  A  L +SD+GSISDEESLIEI+LPTG+YVSH+  +D+++++DDMS 
Sbjct: 65  EESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGNYVSHKSDDDDDDDQDDMSF 124

Query: 123 CYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 125 CFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 173

BLAST of CmoCh02G002360 vs. TAIR 10
Match: AT2G04480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 0

Query: 68  KTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLM 127
           KT ++ D+G+I D+ESLIE+SLP+GHY+ H +   +         + ++ +F      L 
Sbjct: 163 KTNEEDDDGAIPDDESLIELSLPSGHYLGHHYNSNKNH----LYIHNKVQDF-----RLF 222

Query: 128 ELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           +LL EIND  +E+NLIEIDIS+GSIKYSRFEI
Sbjct: 223 DLLNEINDFTEEDNLIEIDISIGSIKYSRFEI 245

BLAST of CmoCh02G002360 vs. TAIR 10
Match: AT5G35870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 71  DQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELL 130
           +  D+G+I DEESLIE+SLP+GHY+ H +     ++ D    Y  +P+F      L++L 
Sbjct: 116 NDEDDGTIPDEESLIELSLPSGHYIGHHYSTMIGKQ-DQKIMYNNIPDF-----RLIQLS 175

Query: 131 AEINDIDEENLIEIDISMGSIKYSRFEI 159
           AE  D   +NLIEIDIS+GSIK SRF+I
Sbjct: 176 AEYED---DNLIEIDISIGSIKCSRFQI 194

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JE345.1e-4263.31uncharacterized protein LOC111483694 OS=Cucurbita maxima OX=3661 GN=LOC111483694... [more]
A0A6J1FUA85.1e-4262.94uncharacterized protein LOC111448485 OS=Cucurbita moschata OX=3662 GN=LOC1114484... [more]
A0A0A0KCP71.9e-4163.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1[more]
A0A5D3CJH94.3e-4161.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CMD04.3e-4161.85uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=... [more]
Match NameE-valueIdentityDescription
KAG6604917.18.2e-7997.50hypothetical protein SDJN03_02234, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038902685.11.2e-4263.01uncharacterized protein LOC120089322 [Benincasa hispida][more]
XP_022943897.11.1e-4162.94uncharacterized protein LOC111448485 [Cucurbita moschata][more]
XP_022985724.11.1e-4163.31uncharacterized protein LOC111483694 [Cucurbita maxima][more]
KAG6570945.16.8e-4162.35hypothetical protein SDJN03_29860, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT2G04480.11.2e-1448.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G35870.11.9e-1247.73unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..47
NoneNo IPR availablePANTHERPTHR35708GB|AAD25831.1coord: 23..158
NoneNo IPR availablePANTHERPTHR35708:SF3GB|AAD25831.1coord: 23..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G002360.1CmoCh02G002360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane