CmoCh02G000970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G000970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH162-like
Location	Cmo_Chr02: 518874 .. 519761 (-)
RNA-Seq Expression	CmoCh02G000970
Synteny	CmoCh02G000970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGTTTGTTTCAATTTTCGATTTAATTAAGGTTTTTAAGCTTTGTTCTCAATTGGGTTTCCATCAAAATTTCAAATTTTTGTAGGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGGTATGGTGATCGTAATTCATCCGTTTAAGCTTTTGAGTTTAGTAATAGTTTTGACGTGGTTACGACGTGTTCGTAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAGAGCCACAAGATTGATTGGAAGCCAATTGGAAGACTTCAGGAGATTTCGAGTGGATAGGGAAATGGTCGATGGACCACCCATTATTTTA

mRNA sequence

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAGAGCCACAAGATTGATTGGAAGCCAATTGGAAGACTTCAGGAGATTTCGAGTGGATAGGGAAATGGTCGATGGACCACCCATTATTTTA

Coding sequence (CDS)

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAG

Protein sequence

MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF

Homology

[Close]

BLAST of CmoCh02G000970 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-23
Identity = 73/183 (39.89%), Postives = 115/183 (62.84%), Query Frame = 0


Query: 10  NQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSL 69
           +   G +  V+RK +EKNRR QMK LYS+L SLLP + ST+ PLT+ DQ++EA  YI+ L
Sbjct: 5   HSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKL 64

Query: 70  TVKLDKVKEKKKRI--------LMSAPTRSPSSN--------LPELKIKEMGSAVEVVFM 129
            V ++K +E+K+ +        L S  + S SS+        LP+++I+E GS   +  +
Sbjct: 65  QVNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLV 124

Query: 130 TELNDRFLFYEIIRIFHEE-RAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERL 176
           T L  +F+F EIIR+  EE  AEI +A YS++DD V ++LH ++E+  Y    +++ ERL
Sbjct: 125 TSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYG-ARSQIPERL 184

[Close]

BLAST of CmoCh02G000970 vs. ExPASy Swiss-Prot
Match: F4I4E1 (Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 51/177 (28.81%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 4   GREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAI 63
           GR     + N S+ + +R + EK+RR +MK L+S L+S + P +     L V   I++A 
Sbjct: 2   GRAREIGEGNSSSLREQRNLREKDRRMRMKHLFSILSSHVSPTRK----LPVPHLIDQAT 61

Query: 64  KYIQSLTVKLDKVKEKKKRILMS--APTRSPSSNLPELKIKEMGSAVEVVFMTELN-DRF 123
            Y+  L   ++ +KEKK+ +L          S  LP+L I+   S +E+  + +LN  R 
Sbjct: 62  SYMIQLKENVNYLKEKKRTLLQGELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRV 121

Query: 124 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 178
           + +E++ IF EE A++++A    L+D   Y++ A+          +++ ER++++ Y
Sbjct: 122 MLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIY 174

[Close]

BLAST of CmoCh02G000970 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09
Identity = 53/176 (30.11%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60
           MER RE    + + S+ + +R + EK RR +MK L+S L+S + P +     L V   I+
Sbjct: 1   MERAREI--GEGSASSLREQRNLREKERRMRMKHLFSILSSHVSPTRR----LPVPQLID 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRIL-MSAPTRSP-SSNLPELKIKEMGSAVEVVFMTELND 120
           +A+ Y+  L  K++ + E K+R+L      RS  SS LP+L I+ + S +E+  + +LN 
Sbjct: 61  QAVSYMIQLKEKVNYLNEMKRRMLGGEVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNM 120

Query: 121 R-FLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLK 174
           +  + ++++ +F EE A++++A    L+D   Y++ A+          +++ ERL+
Sbjct: 121 KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLR 170

[Close]

BLAST of CmoCh02G000970 vs. ExPASy Swiss-Prot
Match: Q9FLI1 (Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.0e-04
Identity = 44/172 (25.58%), Postives = 85/172 (49.42%), Query Frame = 0


Query: 18  KVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLDKVK 77
           K+  +  E+ RR +M  LY+ L SLLP +       +  DQ+ EA+ YI+ L  K+ ++ 
Sbjct: 3   KMMHRETERQRRQEMASLYASLRSLLPLH-FIKGKRSTSDQVNEAVNYIKYLQRKIKELS 62

Query: 78  EKKKRIL-MSAPTRSPSSNLPELKIKEMGSAVEVVFMTE--------LNDRFL-----FY 137
            ++  ++ +S  +   SSN    +  EM S    V + +        L+ R       F 
Sbjct: 63  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS 122

Query: 138 EIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRL 176
            ++++  E    ++N+  S++DD ++Y++ AE+ D+       +L +RL R+
Sbjct: 123 SVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

[Close]

BLAST of CmoCh02G000970 vs. ExPASy TrEMBL
Match: A0A6J1G8B1 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451747 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60
           MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE
Sbjct: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 120
           EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF
Sbjct: 61  EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 120

Query: 121 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK 180
           LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK
Sbjct: 121 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK 180

Query: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 214
           SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF
Sbjct: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213

[Close]

BLAST of CmoCh02G000970 vs. ExPASy TrEMBL
Match: A0A6J1G8Q1 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451748 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 5.6e-57
Identity = 131/197 (66.50%), Postives = 149/197 (75.63%), Query Frame = 0


Query: 24  LEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLDKVKEKKKRI 83
           +EKNRRNQMKLLYS LNSLLPPNQSTDSPLTV DQIEEAIKYI+SL +KL K KEKK+RI
Sbjct: 1   MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERI 60

Query: 84  L----MS---APTRSPSSNLPELKIKEMGSAVEVVFMTELNDRFLFYEIIRIFHEERAEI 143
           L    MS   +   S ++N PEL+IKEMGS VEVVF     DR LF E+I +FHEERAEI
Sbjct: 61  LARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEI 120

Query: 144 INATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYG 203
           IN  YSV +D  LYS+HA+IEDV+Y  GA KL ERL +L YEWKSDAE  A GASSSG+G
Sbjct: 121 INLNYSVHEDMFLYSIHAQIEDVVYELGAKKLVERLNKLVYEWKSDAEMLAGGASSSGHG 180

Query: 204 GSHPSEDTPTARYGGCF 214
           G+HP  + PT   G  F
Sbjct: 181 GTHPPANIPTMSSGRHF 197

[Close]

BLAST of CmoCh02G000970 vs. ExPASy TrEMBL
Match: A0A6J1I4R7 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111469622 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-56
Identity = 128/190 (67.37%), Postives = 148/190 (77.89%), Query Frame = 0


Query: 24  LEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLDKVKEKKKRI 83
           +EKNRRNQMKLLYS LNSLLPPN+STDSPLTV DQIEEAIKYI+SL +KL K KEKK+RI
Sbjct: 1   MEKNRRNQMKLLYSNLNSLLPPNKSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERI 60

Query: 84  L-----MSAPT--RSPSSNLPELKIKEMGSAVEVVFMTELNDRFLFYEIIRIFHEERAEI 143
           L      SAP+   S ++N PEL+IKEMGS VEVVF     D+ LF E+I +FHEERAEI
Sbjct: 61  LASLNMSSAPSDRASTNNNSPELRIKEMGSIVEVVFKRGFEDQSLFDELIGVFHEERAEI 120

Query: 144 INATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYG 203
           IN  YS+ +D +LYS+HAEIEDV+Y  GA KL ERL +L YEWKSDAE  A GASSSG+G
Sbjct: 121 INLNYSIHEDMLLYSIHAEIEDVVYELGAKKLVERLNKLVYEWKSDAELLAGGASSSGHG 180

Query: 204 GSHPSEDTPT 207
           G+HP    PT
Sbjct: 181 GTHPPAKIPT 190

[Close]

BLAST of CmoCh02G000970 vs. ExPASy TrEMBL
Match: A0A6J1FXP8 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111448656 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 5.3e-47
Identity = 115/183 (62.84%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 32  MKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLDKVKEKKKRIL------- 91
           MK LYSKLNSLLP + S + PL+VLDQIEEAIKYI+SL +KL K +EKK+R         
Sbjct: 1   MKSLYSKLNSLLPTHHSNELPLSVLDQIEEAIKYIKSLELKLKKDEEKKERFTRRSSSSS 60

Query: 92  MSAPTRSPSSNLPELKIKEMGSAVEVVFMTEL-NDRFLFYEIIRIFHEERAEIINATYSV 151
             APTRS + N PEL+IKEMGSAVEVV  T L  DRF+FYEII IF+EERAEI+N +YSV
Sbjct: 61  YMAPTRSRNRNGPELRIKEMGSAVEVVLSTGLEEDRFIFYEIIHIFYEERAEIVNVSYSV 120

Query: 152 LDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYGGSHPSED 207
           + ++VLYSL+AEIEDV+Y FGATK TER+KRL Y W++DAE +AAG+SSS  G   P   
Sbjct: 121 VGNSVLYSLYAEIEDVVYEFGATKPTERIKRLVYGWENDAEMKAAGSSSSHGGIRRPGNG 180

[Close]

BLAST of CmoCh02G000970 vs. ExPASy TrEMBL
Match: A0A6J1JF05 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111483908 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.6e-46
Identity = 113/183 (61.75%), Postives = 140/183 (76.50%), Query Frame = 0


Query: 32  MKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLDKVKEKKKRI-------L 91
           MK LYSKLNSLLP + S + PL+V DQIEEAIKYI+SL +KL K +EKK+R        L
Sbjct: 1   MKSLYSKLNSLLPTHHSNEMPLSVSDQIEEAIKYIKSLELKLKKNEEKKERFTRQSSSSL 60

Query: 92  MSAPTRSPSSNLPELKIKEMGSAVEVVFMTEL-NDRFLFYEIIRIFHEERAEIINATYSV 151
            +APTRS + N PEL+IKE+GSAVEVV    L  DRF+FYEII IF++ERAEI+N +YSV
Sbjct: 61  YTAPTRSRNRNGPELRIKEIGSAVEVVLSIGLEEDRFIFYEIIHIFYQERAEIVNVSYSV 120

Query: 152 LDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYGGSHPSED 207
           + ++VLYSLHAEIEDV+Y FGATK TER+KRL Y W +D E +AAG+SSS +GGS    +
Sbjct: 121 VGNSVLYSLHAEIEDVVYEFGATKPTERIKRLVYGWANDGEMKAAGSSSS-FGGSRRPGN 180

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: XP_022948053.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 401.7 bits (1031), Expect = 3.8e-108
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60
           MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE
Sbjct: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 120
           EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF
Sbjct: 61  EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 120

Query: 121 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK 180
           LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK
Sbjct: 121 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK 180

Query: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 214
           SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF
Sbjct: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: XP_023532358.1 (transcription factor bHLH162-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.3 bits (1004), Expect = 5.2e-105
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60
           MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYS LNSLLPPNQSTDSPLT+LDQIE
Sbjct: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 120
           EAIKYIQSLTVKLDKVKEKKKRIL SAPTRSPSSNLPELKIKEMGSAVEVVF TELNDRF
Sbjct: 61  EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF 120

Query: 121 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK 180
           LFYEIIRIFHEER EIINATYSVLDDTVLYSLHAEIEDV+YAFGATKLTERLKRLAYEWK
Sbjct: 121 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK 180

Query: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 214
           SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF
Sbjct: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: KAG6604790.1 (Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 391.0 bits (1003), Expect = 6.7e-105
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60
           MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYS LNSLLPPN+STDSPLTVLDQIE
Sbjct: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNKSTDSPLTVLDQIE 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 120
           EAIKYIQSLTVKLDKVKEKKKRIL SAPTRSPSSNLPELKIKEMGSAVEVVF TELNDRF
Sbjct: 61  EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF 120

Query: 121 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK 180
           LFYEIIRIFHEER EIINATYSVLDDTVLYSLHAEIEDV+YAFGATKLTERLKRLAYEWK
Sbjct: 121 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK 180

Query: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 214
           SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF
Sbjct: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: KAG6604789.1 (Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.0 bits (624), Expect = 6.0e-61
Identity = 144/222 (64.86%), Postives = 166/222 (74.77%), Query Frame = 0


Query: 1   MERGREAAG--NQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQ 60
           ME  REA    NQQ+ +TNKVERKV+EKNRRNQMKLLYS LNSLLPPN+STDSPLTV DQ
Sbjct: 1   MESNREAGNQQNQQDVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNKSTDSPLTVSDQ 60

Query: 61  IEEAIKYIQSLTVKLDKVKEKKKRIL----MSAPT---RSPSSNLPELKIKEMGSAVEVV 120
           IEEAIKYI+SL +KL K  EKK+RIL    MS+      S ++N PEL+IKEMGS VEVV
Sbjct: 61  IEEAIKYIKSLEMKLQKCMEKKERILARLNMSSALSDGASTNNNSPELRIKEMGSIVEVV 120

Query: 121 FMTELNDRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTER 180
           F     D+ LF E+I +FHEERAEIIN  YSV ++  LYS+HAEIEDV+Y  GA KL ER
Sbjct: 121 FTRGFEDQPLFDELIGVFHEERAEIINLNYSVHENMFLYSIHAEIEDVVYELGAKKLVER 180

Query: 181 LKRLAYEWKSDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 214
           L +L YEWKSDAE  A GASSSG+GG+HP  + PT   G  F
Sbjct: 181 LNKLVYEWKSDAEMVAGGASSSGHGGTHPPANIPTMSSGSHF 222

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: XP_022948054.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-56
Identity = 131/197 (66.50%), Postives = 149/197 (75.63%), Query Frame = 0


Query: 24  LEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLDKVKEKKKRI 83
           +EKNRRNQMKLLYS LNSLLPPNQSTDSPLTV DQIEEAIKYI+SL +KL K KEKK+RI
Sbjct: 1   MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERI 60

Query: 84  L----MS---APTRSPSSNLPELKIKEMGSAVEVVFMTELNDRFLFYEIIRIFHEERAEI 143
           L    MS   +   S ++N PEL+IKEMGS VEVVF     DR LF E+I +FHEERAEI
Sbjct: 61  LARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEI 120

Query: 144 INATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYG 203
           IN  YSV +D  LYS+HA+IEDV+Y  GA KL ERL +L YEWKSDAE  A GASSSG+G
Sbjct: 121 INLNYSVHEDMFLYSIHAQIEDVVYELGAKKLVERLNKLVYEWKSDAEMLAGGASSSGHG 180

Query: 204 GSHPSEDTPTARYGGCF 214
           G+HP  + PT   G  F
Sbjct: 181 GTHPPANIPTMSSGRHF 197

[Close]

BLAST of CmoCh02G000970 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 9.6e-25
Identity = 73/183 (39.89%), Postives = 115/183 (62.84%), Query Frame = 0


Query: 10  NQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSL 69
           +   G +  V+RK +EKNRR QMK LYS+L SLLP + ST+ PLT+ DQ++EA  YI+ L
Sbjct: 5   HSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKL 64

Query: 70  TVKLDKVKEKKKRI--------LMSAPTRSPSSN--------LPELKIKEMGSAVEVVFM 129
            V ++K +E+K+ +        L S  + S SS+        LP+++I+E GS   +  +
Sbjct: 65  QVNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLV 124

Query: 130 TELNDRFLFYEIIRIFHEE-RAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERL 176
           T L  +F+F EIIR+  EE  AEI +A YS++DD V ++LH ++E+  Y    +++ ERL
Sbjct: 125 TSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYG-ARSQIPERL 184

[Close]

BLAST of CmoCh02G000970 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-10
Identity = 51/177 (28.81%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 4   GREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAI 63
           GR     + N S+ + +R + EK+RR +MK L+S L+S + P +     L V   I++A 
Sbjct: 2   GRAREIGEGNSSSLREQRNLREKDRRMRMKHLFSILSSHVSPTRK----LPVPHLIDQAT 61

Query: 64  KYIQSLTVKLDKVKEKKKRILMS--APTRSPSSNLPELKIKEMGSAVEVVFMTELN-DRF 123
            Y+  L   ++ +KEKK+ +L          S  LP+L I+   S +E+  + +LN  R 
Sbjct: 62  SYMIQLKENVNYLKEKKRTLLQGELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRV 121

Query: 124 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 178
           + +E++ IF EE A++++A    L+D   Y++ A+          +++ ER++++ Y
Sbjct: 122 MLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIY 174

[Close]

BLAST of CmoCh02G000970 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-10
Identity = 53/176 (30.11%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60
           MER RE    + + S+ + +R + EK RR +MK L+S L+S + P +     L V   I+
Sbjct: 1   MERAREI--GEGSASSLREQRNLREKERRMRMKHLFSILSSHVSPTRR----LPVPQLID 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRIL-MSAPTRSP-SSNLPELKIKEMGSAVEVVFMTELND 120
           +A+ Y+  L  K++ + E K+R+L      RS  SS LP+L I+ + S +E+  + +LN 
Sbjct: 61  QAVSYMIQLKEKVNYLNEMKRRMLGGEVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNM 120

Query: 121 R-FLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLK 174
           +  + ++++ +F EE A++++A    L+D   Y++ A+          +++ ERL+
Sbjct: 121 KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLR 170

[Close]

BLAST of CmoCh02G000970 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-05
Identity = 44/172 (25.58%), Postives = 85/172 (49.42%), Query Frame = 0


Query: 18  KVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLDKVK 77
           K+  +  E+ RR +M  LY+ L SLLP +       +  DQ+ EA+ YI+ L  K+ ++ 
Sbjct: 3   KMMHRETERQRRQEMASLYASLRSLLPLH-FIKGKRSTSDQVNEAVNYIKYLQRKIKELS 62

Query: 78  EKKKRIL-MSAPTRSPSSNLPELKIKEMGSAVEVVFMTE--------LNDRFL-----FY 137
            ++  ++ +S  +   SSN    +  EM S    V + +        L+ R       F 
Sbjct: 63  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS 122

Query: 138 EIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRL 176
            ++++  E    ++N+  S++DD ++Y++ AE+ D+       +L +RL R+
Sbjct: 123 SVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

The following BLAST results are available for this feature:

BLAST of CmoCh02G000970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	1.4e-23	39.89	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
F4I4E1	1.4e-09	28.81	Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=...	[more]
Q9XIJ1	4.2e-09	30.11	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]
Q9FLI1	7.0e-04	25.58	Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1	[more]

BLAST of CmoCh02G000970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8B1	1.8e-108	100.00	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451747 ...	[more]
A0A6J1G8Q1	5.6e-57	66.50	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451748 ...	[more]
A0A6J1I4R7	1.3e-56	67.37	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111469622 PE...	[more]
A0A6J1FXP8	5.3e-47	62.84	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111448656 ...	[more]
A0A6J1JF05	2.6e-46	61.75	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111483908 PE...	[more]

BLAST of CmoCh02G000970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948053.1	3.8e-108	100.00	transcription factor bHLH162-like [Cucurbita moschata]	[more]
XP_023532358.1	5.2e-105	97.18	transcription factor bHLH162-like [Cucurbita pepo subsp. pepo]	[more]
KAG6604790.1	6.7e-105	97.18	Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma...	[more]
KAG6604789.1	6.0e-61	64.86	Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma...	[more]
XP_022948054.1	1.2e-56	66.50	transcription factor bHLH162-like [Cucurbita moschata]	[more]

BLAST of CmoCh02G000970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	9.6e-25	39.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	1.0e-10	28.81	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	3.0e-10	30.11	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51780.1	5.0e-05	25.58	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..213
None	No IPR available	PANTHER	PTHR13935:SF63	HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN	coord: 15..183
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 22..75 e-value: 7.5E-6 score: 35.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 19..69 e-value: 5.0E-8 score: 32.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 16..69 score: 12.31559
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 8..93 e-value: 1.1E-8 score: 36.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 17..87
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 15..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G000970.1	CmoCh02G000970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity