CmoCh02G000370 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G000370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 208992 .. 209687 (+)
RNA-Seq ExpressionCmoCh02G000370
SyntenyCmoCh02G000370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTAACCACCAGGATCATCTCTTATAACGCTGTTTTGGGAGCTCTTCTTCTTCTGGGTTCGCTTCCTTTACTGTTTGCTTTTACTCTCTGTGCTTTCCTCCATTGCAAACCAAGCTTCCTTTACAATACCCACCAACCATTTTCACCCTTTATATCCTCTCCAGTTATCTTATTCAATCTCTTTCTCTCTCTAGGGATTAGATTTTTGTCTGTGTGTGCCCTTCTCCTCTTCCATCTTCTATTTTATCATTCTCACAATTTCCCATTGGCCCACTATCCCTGCTTCTTTATTGCTCCTTTTTCTACCATGTCTCTCTGGGGGCTCTGGATTTGTTGGGTTTGAGTTATTTCAGACCAACATTTTGGCATTTCCCCCATGCCTTTTGGGGCTCTATTGGCTATCCACGCTTTGCTTTCTTTCCCTTTCTGGGTTCCTGGAGGAACGCCGAAATCTGGGTCTATCTTCGATTGCTTCATCAGGTAAATCCCTTGTTCTTCAAATCCTTCTCTATTTCTCCAATTACATTGTTTTGTCTTCTTGTTTTGGATCGACAAATTGTGGGTTTACTTGTTTTTGTTATGGAGAACATTCCTTCATTGTTTGTTCCTATCAATCAACTGCTGGTTCTTGTTGTTTACAAGTGCTGACTTATTTCCTGCCTGAATTTCCAGATGGGTTTGTGAAATTTGA

mRNA sequence

ATGCCATTAACCACCAGGATCATCTCTTATAACGCTGTTTTGGGAGCTCTTCTTCTTCTGGACCAACATTTTGGCATTTCCCCCATGCCTTTTGGGGCTCTATTGGCTATCCACGCTTTGCTTTCTTTCCCTTTCTGGGTTCCTGGAGGAACGCCGAAATCTGGGTCTATCTTCGATTGCTTCATCAGATGGGTTTGTGAAATTTGA

Coding sequence (CDS)

ATGCCATTAACCACCAGGATCATCTCTTATAACGCTGTTTTGGGAGCTCTTCTTCTTCTGGACCAACATTTTGGCATTTCCCCCATGCCTTTTGGGGCTCTATTGGCTATCCACGCTTTGCTTTCTTTCCCTTTCTGGGTTCCTGGAGGAACGCCGAAATCTGGGTCTATCTTCGATTGCTTCATCAGATGGGTTTGTGAAATTTGA

Protein sequence

MPLTTRIISYNAVLGALLLLDQHFGISPMPFGALLAIHALLSFPFWVPGGTPKSGSIFDCFIRWVCEI
Homology
[Close]
BLAST of CmoCh02G000370 vs. ExPASy TrEMBL
Match: A0A5D3DV12 (Putative receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00390 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 29 MPFGALLAIHALLSFPFWVPGGTPKSGSIFDCFIRWVCE 68
          MPFG+ LA H  L FPFWVPGG  KSGSIFD ++  VC+
Sbjct: 1  MPFGSPLAKHDSLCFPFWVPGGRGKSGSIFDYYMSGVCK 39

[Close]
BLAST of CmoCh02G000370 vs. ExPASy TrEMBL
Match: A0A5A7UFP7 (Putative receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004030 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 29 MPFGALLAIHALLSFPFWVPGGTPKSGSIFDCFIRWVCE 68
          MPFG+ LA H  L FPFWVPGG  KSGSIFD ++  VC+
Sbjct: 1  MPFGSPLAKHDSLCFPFWVPGGRGKSGSIFDYYMSGVCK 39

[Close]
BLAST of CmoCh02G000370 vs. NCBI nr
Match: KAG7034858.1 (putative receptor-like protein kinase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 29 MPFGALLAIHALLSFPFWVPGGTPKSGSIFDCFIR 64
          MPFGALLAIHALLSFPFWVPGGTPKSGSIFDCFIR
Sbjct: 1  MPFGALLAIHALLSFPFWVPGGTPKSGSIFDCFIR 35

[Close]
BLAST of CmoCh02G000370 vs. NCBI nr
Match: KAA0054602.1 (putative receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 9.6e-05
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 29 MPFGALLAIHALLSFPFWVPGGTPKSGSIFDCFIRWVCE 68
          MPFG+ LA H  L FPFWVPGG  KSGSIFD ++  VC+
Sbjct: 1  MPFGSPLAKHDSLCFPFWVPGGRGKSGSIFDYYMSGVCK 39

[Close]
BLAST of CmoCh02G000370 vs. NCBI nr
Match: TYK27566.1 (putative receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 9.6e-05
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 29 MPFGALLAIHALLSFPFWVPGGTPKSGSIFDCFIRWVCE 68
          MPFG+ LA H  L FPFWVPGG  KSGSIFD ++  VC+
Sbjct: 1  MPFGSPLAKHDSLCFPFWVPGGRGKSGSIFDYYMSGVCK 39

The following BLAST results are available for this feature:
BLAST of CmoCh02G000370 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G000370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DV124.7e-0564.10Putative receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7UFP74.7e-0564.10Putative receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
BLAST of CmoCh02G000370 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034858.11.4e-11100.00putative receptor-like protein kinase [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAA0054602.19.6e-0564.10putative receptor-like protein kinase [Cucumis melo var. makuwa][more]
TYK27566.19.6e-0564.10putative receptor-like protein kinase [Cucumis melo var. makuwa][more]
BLAST of CmoCh02G000370 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G000370.1CmoCh02G000370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
cellular_component GO:0016020 membrane
molecular_function GO:0016301 kinase activity
molecular_function GO:0000166 nucleotide binding