CmoCh01G017740 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G017740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 13128885 .. 13130744 (-)
RNA-Seq ExpressionCmoCh01G017740
SyntenyCmoCh01G017740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTGGAATTTTGCCGGACAGAGGATACCAACACCACAATTTGTATATTATATCAGTGTCAGCACACCGGACTGCTTCTTCCCGGTACTGCTATGTTTTAAATGAAAATTCTCCTAGAATTTCCTTTCAAGGGGTCAGTACGTAGCCATGGTTTTGGATATGCATTTGAATACTTGGATATGGGGTTATGCCCTCTGATTTTATCCTGTTTTGTGGGTGATATTCTGATGCTATCTTGCCTGTTAGTTGTTTTTCTACCTTGAACTTGTCTCCTAATTCATAATAGTTTTCATTAAATGTCAAAGCTCCTAATACCATCTTGACATATCCATAGTGTTCGTCTCAATTTTGCTGATGATCTTACATTTTTGTAGATAGTGAAGATGGGATCTGATGGTTCGCTGAGGCATTAAAGGTTATGATCAAGTGGGTCATAGATAATCTTCCATGAAATGATGGAGGATTATTGGGCGGGAGTTTCACATTAGCTAATTTAGGGAATGATCATGGGTTTATAAATAAGGAATACATCCCTATTGATATGAGGCATTTTGGGAAGCCCAAAGCAAAATCATGAGAGCTTATGCTCAAAGTTGGACAATATCATTTCATTGTGGAGAGTCGTGATTTCTAACATGATGCATCTCTCAAAATTCTGGTCGAATGCATTGTGATACCAAGAATTTTTAGCCTGAATACTGTTCGGGCGCCAAACTTCTAGTTGGACCCCAAGTTTCAGGTGCCAAGAATGTCTGGCCATTTCCCGGCACCATCCTATTTGGTATCCATTAGGAAGTGAAATCAAGGAGTCATCCATTGGAAGTGGAACAACTCTATCTCTCTGTTCAATTACAAGTAAATTCTGTGTTCTAAATGGCTTTTCTACAAGTCGTTTTTTTCTGTATCTAAGTTGAAAATAGAACTCAAATTGCTGTTTGTTGTCCAATAACCTCGAAGTAGCTCTAATTGCAGGGTGCTTTGGAAGAAACCATATTCTGGGCAGGCGAGAATCAGAAGCTTTCCCAACGCCATGGCTATATACACCAAAGTTTCGGTTGGTTTGGTTCTTGTACTCTCTGCCTTTTCTGTTAACATTGCATTGGAATCTCATCTTTGGAGGGCTAAATCAAACCACACTCGTTCTAACATGCTTGTATTTCATACGTGTCATGTTGGCTTAGCACAGAAATGACAATTTAGCTCATCATCTGTTCATGCATCACAGGGCCAACAGATAATGATTCCTCGTTGCATTCATGAAGAGAAGAGGTATTAATGTATCGACTAATTAAGTCGTGTTTAGGTCTGCATGCAAGGCTGTTATCGGAACCATCGGCTCATCTATGATAAATCTCTTTGTGTGGTTTGTGTGGTTGGGGGAAAATGGAATACACTATTATTATAGTAGCTGGAACGACAGAAGGAATCGATCATCCCCTGGGTTTAGTTCACATGTTCTTGCTTAGTTTGTATTTTAGTGTGAGATTCCACGTCGGTTAGAAAGAGGACCGAAACATTTCTTATAAGTGTGTGGAGGCTTCTTCCTAACAGACGCGTTTTAAAGCTGTGAGATTGACAGCAGACAATATCTGCTAACAGTGAACTTGAGCGGTTACAAATGGTATCAGAGTCAGACACTAGACGATCGATGCTGACTCCCAAGGAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACAAAACTTCCTTTACGTGGAAACCTCTCCTAATAGACATATTTTAAAATTGTGAGGTTGACGATGTTATTAATGGGCCATAGTGAATAATATCTGCTAGTGGTAGGCTTATGCTTATGTTTTTACATCTAAGTACGTGGCAAACAAGAGAAACG

mRNA sequence

ATGCCTTGGAATTTTGCCGGACAGAGGATACCAACACCACAATTTGTATATTATATCAGTGTCAGCACACCGGACTGCTTCTTCCCGGAAGTGAAATCAAGGAGTCATCCATTGGAAGTGGAACAACTCTATCTCTCTGTTCAATTACAAGGTGCTTTGGAAGAAACCATATTCTGGGCAGGCGAGAATCAGAAGCTTTCCCAACGCCATGGCTATATACACCAAAGTTTCGGGCCAACAGATAATGATTCCTCGTTGCATTCATGAAGAGAAGAGGTATTAATGTATCGACTAATTAAGTCGTGTTTAGGTCTGCATGCAAGGCTGTTATCGGAACCATCGGCTCATCTATGATAAATCTCTTTGTGTGGTTTGTGTGGTTGGGGGAAAATGGAATACACTATTATTATAGTAGCTGGAACGACAGAAGGAATCGATCATCCCCTGGGTTTAGTTCACATGTTCTTGCTTAGTTTGTATTTTAGTGTGAGATTCCACGTCGGTTAGAAAGAGGACCGAAACATTTCTTATAAGTGTGTGGAGGCTTCTTCCTAACAGACGCGTTTTAAAGCTGTGAGATTGACAGCAGACAATATCTGCTAACAGTGAACTTGAGCGGTTACAAATGGTATCAGAGTCAGACACTAGACGATCGATGCTGACTCCCAAGGAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACAAAACTTCCTTTACGTGGAAACCTCTCCTAATAGACATATTTTAAAATTGTGAGGTTGACGATGTTATTAATGGGCCATAGTGAATAATATCTGCTAGTGGTAGGCTTATGCTTATGTTTTTACATCTAAGTACGTGGCAAACAAGAGAAACG

Coding sequence (CDS)

ATGCCTTGGAATTTTGCCGGACAGAGGATACCAACACCACAATTTGTATATTATATCAGTGTCAGCACACCGGACTGCTTCTTCCCGGAAGTGAAATCAAGGAGTCATCCATTGGAAGTGGAACAACTCTATCTCTCTGTTCAATTACAAGGTGCTTTGGAAGAAACCATATTCTGGGCAGGCGAGAATCAGAAGCTTTCCCAACGCCATGGCTATATACACCAAAGTTTCGGGCCAACAGATAATGATTCCTCGTTGCATTCATGA

Protein sequence

MPWNFAGQRIPTPQFVYYISVSTPDCFFPEVKSRSHPLEVEQLYLSVQLQGALEETIFWAGENQKLSQRHGYIHQSFGPTDNDSSLHS
Homology
[Close]
BLAST of CmoCh01G017740 vs. NCBI nr
Match: KAG6608380.1 (hypothetical protein SDJN03_01722, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.7 bits (387), Expect = 7.5e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MPWNFAGQRIPTPQFVYYISVSTPDCFFPEVKSRSHPLEVEQLYLSVQLQGALEETIFWA 60
          MPWNFAGQRIPTPQFVYYISVSTPDCFFPEVKSRSHPLEVEQLYLSVQLQGALEETIFWA
Sbjct: 1  MPWNFAGQRIPTPQFVYYISVSTPDCFFPEVKSRSHPLEVEQLYLSVQLQGALEETIFWA 60

Query: 61 GENQKLSQRHG 72
          GENQKLSQRHG
Sbjct: 61 GENQKLSQRHG 71

The following BLAST results are available for this feature:
BLAST of CmoCh01G017740 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G017740 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G017740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608380.17.5e-34100.00hypothetical protein SDJN03_01722, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh01G017740 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G017740.1CmoCh01G017740.1mRNA