CmoCh01G016150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G016150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 12323077 .. 12324498 (+)
RNA-Seq ExpressionCmoCh01G016150
SyntenyCmoCh01G016150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGGATGGGGACAATTCTCATTAAAAGGTAACGTCATGATTGAACTTTGTAGTAGACAAAAGTACGGGACCATTTTAACTCGAAAAGCACCTGTTCTTCCGAGAAATAGAAATTAGCTCCACCTGATTTTGTGGTTTTCTGTTGTTTTATCGCAAGTGCTTTGGCTGATCATAATTGATTAGTGTTCTTCTGAGAGGTTGCCTCACAATTTTCTTATGATATTGCTTGTGCTTGTTGTCAGTAATGTATATTCTTCAATTTTAGCTGAACGTGTGTTCATATTATTTTGAAGTAACTATTGCCGAGTACTATAAACTTCTTGAGTCTGTGTCATTGGAAAAAAGAACTTCAGAGTTTGTAATGCACAAGGGAAGGAATCATTGAAGCAATCACGGTGACGTGGCGAAGTTCATATCTCATCGACACGGTATCTTTCCTTCTTTACTTATATCATGTTAATGGCACAAGCTATTCACTAGGGATAGTTGAAAATTAAGATAACATGTCTGCTAAGAGATGATTCACTTTGTTATCAATTGAGAAGTATTCTATTTCTGTCCATACTTTCAAAAATACGTTACGTACTTTTATGATGTCGATTAAGATACAAGAAAAGACTTCTGATTGAGGAAGAAAAGACTTTCGAGGAGATGATTCTCTCGTTTAAATTATATGTTCTTAAATCTAATTTCTATTTCCCTGTCAAATGAACCTTGTAACAACTCAAGCCCACCGCTAGCATATATTATTCTCTTTGGAATTTCCCTTTCGGGCTTCTCCTCAAGGTTTTTAAAACGCATATGCTAGGGAGAAGTTTTTACACCCTTATAAAGAATACTTTGTTCTCCTTCCCAACCGATGTGGGATCTCACAATCCTAGATCAGGTATAATCCGTTGAAAACTTGTGTTCTCTAGGCGCAGAGAACTGCAGTCTTTGTTCCTTGCTGTACATACCTACAGTGGCATGCTTATTTTAAAGGTAATCAGAATTCTTTGAAAATTTTGATATTGTCCAGCTATGCTATCCTAGTTTTTGTTTTATCTTGTTTCTTGATTCCCATTTATATGTTGTGTTCGCTTTTGGTGTTCAGGATGATCATGTTGCTCTATGCAGCAAATTCTGGTTTCATTTCACTCACTCAGCTATGTCTATGCTTTCTGCATCATGTAAGTCAATTTTGATGTTAATTTGTCTTGCTTTGTTTGTGGGATGAAGGAAGCATTTTGATAGCTCAAAGGAAGGAAAAGAAGTTACTGTAAGCAAATCTAATGGTTTGATTGACTCGTATCGACGTAGACTTTGATGCTTTAATGAGATATTCAAATGATGGAGAAGTCGCTCTTTTTAAGATTGTCTCAAACGATCGTCTGAAAGTGACAAAAGAAACAGCTTATTCTTTCTTCGATAATTTCTGA

mRNA sequence

ATGAATTGGATGGGGACAATTCTCATTAAAAGGCGCAGAGAACTGCAGTCTTTGTTCCTTGCTGTACATACCTACAGTGGCATGCTTATTTTAAAGGATGATCATGTTGCTCTATGCAGCAAATTCTGGTTTCATTTCACTCACTCAGCTATGTCTATGCTTTCTGCATCATACTTTGATGCTTTAATGAGATATTCAAATGATGGAGAAGTCGCTCTTTTTAAGATTGTCTCAAACGATCGTCTGAAAGTGACAAAAGAAACAGCTTATTCTTTCTTCGATAATTTCTGA

Coding sequence (CDS)

ATGAATTGGATGGGGACAATTCTCATTAAAAGGCGCAGAGAACTGCAGTCTTTGTTCCTTGCTGTACATACCTACAGTGGCATGCTTATTTTAAAGGATGATCATGTTGCTCTATGCAGCAAATTCTGGTTTCATTTCACTCACTCAGCTATGTCTATGCTTTCTGCATCATACTTTGATGCTTTAATGAGATATTCAAATGATGGAGAAGTCGCTCTTTTTAAGATTGTCTCAAACGATCGTCTGAAAGTGACAAAAGAAACAGCTTATTCTTTCTTCGATAATTTCTGA

Protein sequence

MNWMGTILIKRRRELQSLFLAVHTYSGMLILKDDHVALCSKFWFHFTHSAMSMLSASYFDALMRYSNDGEVALFKIVSNDRLKVTKETAYSFFDNF
Homology
[Close]
BLAST of CmoCh01G016150 vs. NCBI nr
Match: KAG6608204.1 (hypothetical protein SDJN03_01546, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 13  RELQSLFLAVHTYSGMLILKDDHVALCSKFWFHFTHSAMSMLSASYFDALMRYS 67
           RELQSLFLAVHTYSGMLILKDDH ALCSKFWFHFTHSAMSMLSAS+   L   S
Sbjct: 69  RELQSLFLAVHTYSGMLILKDDHGALCSKFWFHFTHSAMSMLSASWIYTLTSQS 122

The following BLAST results are available for this feature:
BLAST of CmoCh01G016150 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G016150 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G016150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608204.11.7e-1585.19hypothetical protein SDJN03_01546, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh01G016150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G016150.1CmoCh01G016150.1mRNA