CmoCh01G016010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G016010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cryptochrome DASH
Location	Cmo_Chr01: 12262234 .. 12263054 (+)
RNA-Seq Expression	CmoCh01G016010
Synteny	CmoCh01G016010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACTCCCTACTTCTTCCTCTCTGAAACCTGCGGTCCAAATTGCCTCAAAATCTGCTCGCCATCAATTTTTCCGACGAATCTCGACCATGAATTCGAGATCGAAGCTAGATTCTAGGTCGTCGTCGTCGTCGTCGTCGACATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGCCCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTCTGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGGTTTATTTCTGAATTTATTCTTTACTTTTGTTACTGATAAAGATGATCGTGTAATTTGTTTGGAATTTATGCGTCTCTTGTTGAGCTCTGAACTGGTGGATTTTTTGTTCTATTTCTTGTTGTTGCCGATCATGAAGCGATTCTGTTCCATGTAATGCTCATAGCTCATTACTACTACTTGAGCGTAATGGAGCTCTTGCTCATCGGGTTTAGGTCACGTCTTCTCTTCTTGTAGTCCAAATTATTGAGGCGATTTTTGAAAAAATTCATGGCTATGTAGCAGTAAGTTATCAATTATGCTGGAAATGTCTTAAGCTATTTGTTGAATCGCTGTTTAAAATTATGATTTCAGCGTTTTGGAACTTATGCTTAGAGCAAGTGTTTCAACGATTATATAATTTTCTCCCTTTCTTGCAGCAATGA

mRNA sequence

ACACTCCCTACTTCTTCCTCTCTGAAACCTGCGGTCCAAATTGCCTCAAAATCTGCTCGCCATCAATTTTTCCGACGAATCTCGACCATGAATTCGAGATCGAAGCTAGATTCTAGGTCGTCGTCGTCGTCGTCGTCGACATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGCCCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTCTGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGCAATGA

Coding sequence (CDS)

ATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGCCCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTCTGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGCAATGA

Protein sequence

MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEQ

Homology

[Close]

BLAST of CmoCh01G016010 vs. ExPASy TrEMBL
Match: A0A6J1FSP3 (uncharacterized protein LOC111446523 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446523 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 11 MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 70
          MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI
Sbjct: 1  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 60

Query: 71 QDLLVLPATSDFLELE 87
          QDLLVLPATSDFLELE
Sbjct: 61 QDLLVLPATSDFLELE 76

[Close]

BLAST of CmoCh01G016010 vs. ExPASy TrEMBL
Match: A0A6J1FKA6 (uncharacterized protein LOC111446523 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446523 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 11 MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 70
          MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI
Sbjct: 1  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 60

Query: 71 QDLLVLPATSDFLELE 87
          QDLLVLPATSDFLELE
Sbjct: 61 QDLLVLPATSDFLELE 76

[Close]

BLAST of CmoCh01G016010 vs. ExPASy TrEMBL
Match: A0A6J1CNT8 (Cryptochrome DASH OS=Momordica charantia OX=3673 GN=LOC111012808 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 5  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV 40
          GLESEEMDRIAEQ+FRRYSSPSSSG+KRGKGVA+V
Sbjct: 64 GLESEEMDRIAEQMFRRYSSPSSSGIKRGKGVAIV 98

[Close]

BLAST of CmoCh01G016010 vs. ExPASy TrEMBL
Match: A0A6J1F6T7 (Cryptochrome DASH OS=Cucurbita moschata OX=3662 GN=LOC111442648 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 50 MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE 87
          MR CIRPGFR RLCCRCI LI+D LVLPATSDFL+LE
Sbjct: 1  MRPCIRPGFRQRLCCRCIALIRDFLVLPATSDFLKLE 37

[Close]

BLAST of CmoCh01G016010 vs. ExPASy TrEMBL
Match: A0A6J1IDX9 (cryptochrome DASH, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476213 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 5  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV 40
          GLESEEMDRIAEQ+FRRY+SPSSS VKRGKGVA+V
Sbjct: 60 GLESEEMDRIAEQMFRRYASPSSSSVKRGKGVAIV 94

[Close]

BLAST of CmoCh01G016010 vs. NCBI nr
Match: KAG7037552.1 (hypothetical protein SDJN02_01180, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRP 60
          MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRP
Sbjct: 1  MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRP 60

Query: 61 RLCCRCIPLIQDLLVLPATSDFLELE 87
          RLCCRCIPLIQDLLVLPATSDFLELE
Sbjct: 61 RLCCRCIPLIQDLLVLPATSDFLELE 86

[Close]

BLAST of CmoCh01G016010 vs. NCBI nr
Match: XP_022941135.1 (uncharacterized protein LOC111446523 isoform X1 [Cucurbita moschata])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 11 MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 70
          MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI
Sbjct: 1  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 60

Query: 71 QDLLVLPATSDFLELE 87
          QDLLVLPATSDFLELE
Sbjct: 61 QDLLVLPATSDFLELE 76

[Close]

BLAST of CmoCh01G016010 vs. NCBI nr
Match: XP_022941136.1 (uncharacterized protein LOC111446523 isoform X2 [Cucurbita moschata])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 11 MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 70
          MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI
Sbjct: 1  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLI 60

Query: 71 QDLLVLPATSDFLELE 87
          QDLLVLPATSDFLELE
Sbjct: 61 QDLLVLPATSDFLELE 76

[Close]

BLAST of CmoCh01G016010 vs. NCBI nr
Match: XP_022142772.1 (cryptochrome DASH, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 5  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV 40
          GLESEEMDRIAEQ+FRRYSSPSSSG+KRGKGVA+V
Sbjct: 64 GLESEEMDRIAEQMFRRYSSPSSSGIKRGKGVAIV 98

[Close]

BLAST of CmoCh01G016010 vs. NCBI nr
Match: XP_022935872.1 (cryptochrome DASH, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 50 MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE 87
          MR CIRPGFR RLCCRCI LI+D LVLPATSDFL+LE
Sbjct: 1  MRPCIRPGFRQRLCCRCIALIRDFLVLPATSDFLKLE 37

The following BLAST results are available for this feature:

BLAST of CmoCh01G016010 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G016010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSP3	1.1e-35	100.00	uncharacterized protein LOC111446523 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FKA6	1.1e-35	100.00	uncharacterized protein LOC111446523 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CNT8	2.6e-08	91.43	Cryptochrome DASH OS=Momordica charantia OX=3673 GN=LOC111012808 PE=3 SV=1	[more]
A0A6J1F6T7	2.6e-08	83.78	Cryptochrome DASH OS=Cucurbita moschata OX=3662 GN=LOC111442648 PE=3 SV=1	[more]
A0A6J1IDX9	2.2e-07	88.57	cryptochrome DASH, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of CmoCh01G016010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037552.1	2.4e-40	100.00	hypothetical protein SDJN02_01180, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022941135.1	2.3e-35	100.00	uncharacterized protein LOC111446523 isoform X1 [Cucurbita moschata]	[more]
XP_022941136.1	2.3e-35	100.00	uncharacterized protein LOC111446523 isoform X2 [Cucurbita moschata]	[more]
XP_022142772.1	5.3e-08	91.43	cryptochrome DASH, chloroplastic/mitochondrial [Momordica charantia]	[more]
XP_022935872.1	5.3e-08	83.78	cryptochrome DASH, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata]	[more]

BLAST of CmoCh01G016010 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G016010.1	CmoCh01G016010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000719	photoreactive repair
biological_process	GO:0018298	protein-chromophore linkage
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003913	DNA photolyase activity
molecular_function	GO:0071949	FAD binding