CmoCh01G015870 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G015870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CHY-type/CTCHY-type/RING-type Zinc finger protein
Location	Cmo_Chr01: 12190674 .. 12192378 (+)
RNA-Seq Expression	CmoCh01G015870
Synteny	CmoCh01G015870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGTGAGTTCCATTTTGTGCACCAATTCACGTCTCGTTTTTGTATGCATCAATCTTAGTTTGTATTTATTTTGGTATACATTTTGTTTGTTGCAGACATCTAAGAAGCAGTATCACTGTAATGGCTGTGGAATTTGTAGGTACGATATCCTAATCCGTATACCTTCTCAAAGATTAGCGCTCCGTTCCCACGCTTACTCGATGGCTTTTGAACGTTTTGACAGAATCGGGGGGCGGGAGAAATTCTTCCACTGCCATAAGTGTGGTAAGTCATATGTGATTATCTGAATTCATCCTGCTATTGATGGTCACATGTGTGCTAATTTTTGTATAATATGTACTTTTTTCCATGAAGGTTGCTGCTATTCAGCTATTTTAAAAAATGGCCATCCCTGCATCGAAGGAGCAATGCACCATGACTGTCCTGTTTGCTTTGAGGTAAAGCTTCTGTGAATGTCCCACGTGGTTGGGGAGGAGAACAAACCACCGTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTCTTCCCCTCGAGGGAAAGCCCGCTATCTATTGTATACCCACACAAACTGATAATGCACATCTTTATCAAATGGCTTGCAGTATCTGTTTGATTCGACAAACGACGTATCGGTGATGCCGTGTGGACACACCATCCATCAAAGTTGCTTGAATGCGATGAGAGATCACTTTCAGTGAGTGCTTATACACAGTTCTTGTTTACTTATGATTATGGAACTTTGTTTCTGAATCAAATTGTGAGCCTGCCATAGATTTGCTTGTCCTCTCTGCTCCAAGTCCGTTTGTGATATGTCCAAGGTGTGGGAAAAATTTGACATGGAAATTGCAGCTACTCCAATTCCAGAGCCATACCAAAATAAAGTGGTAAAACTCCAAAACTTTGGATCTTCTTTCATTATAGAGCATATCAGCTGGAGCTATGTAGTGGTAGTTAATATGATATCCTAGCAGAAAGATTGTGTTCAAATTGCTATCTATTATGTCATTTTCTTCGCAAGTGATAGTTATGTGTGGAGTTTCTCAATCAAAATGATACCCCATTTGTTCATGTGCTGGTGGCCCCATCTCACTACTTTGACCCTACTGAAGTAGTACTACTTTGACCCTACTACATTTCGTCACGAAGTAGTGAGATAGTCGAAGTGTATACAAGTGGACCTAGTTAATCACGGGTTTACAATGTGTATATATTCATTGACTTTTTTGGTCACCTCGACTTAAAAACTTCTTATTTTGGACAGGTTTGGATTCTTTGCAACGATTGCGGGAAAACGTCGAAGGTGCAGTATCATGTTGTGGCTCAAAAATGCTTGAATTGCAGGTCCTACAACACCAGACTGATTGGCTAAGGATGTGGATATGAAGGCCACATCCCCATCGTCCTGCAACTCTGAAATGCTTCAAACCACTCGACGACAATGACGACGATGATGACGACGTTCTGCAGCCTCCTCGTTTGTTTATCTTCTTTATTTGGTTGATTTCTTGTAGTCCACCTCTGCCTTCTCCGTTCTTTTTGTTTGTTTCTCTTCTTTATTTGGTTGAGTTCTTGTAGTCTACTTCTGCCTTCTCCGTTCTATTTGTTGCTGTCTATATTGCTGTATTTGCCCCTTCGTTCGAAATAAGATGCGCGCATCGTAATCGTGTTAGTGAATTGCATTGCTTTAAAGTTCCC

mRNA sequence

ATGATGATACATCTAAGAAGCAGTATCACTGTAATGGCTGTGGAATTTGTAGAATCGGGGGGCGGGAGAAATTCTTCCACTGCCATAAGTGTGTATCTGTTTGATTCGACAAACGACGTATCGGTGATGCCGTGTGGACACACCATCCATCAAAGTTGCTTGAATGCGATGAGAGATCACTTTCAATTTGCTTGTCCTCTCTGCTCCAAGTCCGTTTGTGATATGTCCAAGGTGTGGGAAAAATTTGACATGGAAATTGCAGCTACTCCAATTCCAGAGCCATACCAAAATAAAGTGGTTTGGATTCTTTGCAACGATTGCGGGAAAACGTCGAAGGTGCAGTATCATGTTGTGGCTCAAAAATGCTTGAATTGCAGGTCCTACAACACCAGACTGATTGGCTAAGGATGTGGATATGAAGGCCACATCCCCATCGTCCTGCAACTCTGAAATGCTTCAAACCACTCGACGACAATGACGACGATGATGACGACGTTCTGCAGCCTCCTCGTTTGTTTATCTTCTTTATTTGGTTGATTTCTTGTAGTCCACCTCTGCCTTCTCCGTTCTTTTTGTTTGTTTCTCTTCTTTATTTGGTTGAGTTCTTGTAGTCTACTTCTGCCTTCTCCGTTCTATTTGTTGCTGTCTATATTGCTGTATTTGCCCCTTCGTTCGAAATAAGATGCGCGCATCGTAATCGTGTTAGTGAATTGCATTGCTTTAAAGTTCCC

Coding sequence (CDS)

ATGATGATACATCTAAGAAGCAGTATCACTGTAATGGCTGTGGAATTTGTAGAATCGGGGGGCGGGAGAAATTCTTCCACTGCCATAAGTGTGTATCTGTTTGATTCGACAAACGACGTATCGGTGATGCCGTGTGGACACACCATCCATCAAAGTTGCTTGAATGCGATGAGAGATCACTTTCAATTTGCTTGTCCTCTCTGCTCCAAGTCCGTTTGTGATATGTCCAAGGTGTGGGAAAAATTTGACATGGAAATTGCAGCTACTCCAATTCCAGAGCCATACCAAAATAAAGTGGTTTGGATTCTTTGCAACGATTGCGGGAAAACGTCGAAGGTGCAGTATCATGTTGTGGCTCAAAAATGCTTGAATTGCAGGTCCTACAACACCAGACTGATTGGCTAA

Protein sequence

MMIHLRSSITVMAVEFVESGGGRNSSTAISVYLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG

Homology

[Close]

BLAST of CmoCh01G015870 vs. ExPASy Swiss-Prot
Match: Q5JL96 (Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-36
Identity = 68/102 (66.67%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLF+STNDVSV+PCGHTIH  CL  M +H QFACPLCSKSVCDMSK WE+ D E+A   I
Sbjct: 203 YLFESTNDVSVLPCGHTIHVKCLREMEEHCQFACPLCSKSVCDMSKAWERLDEELAT--I 262

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLI 134
            +   NK+V ILCNDCG TS+VQ+H++A KC  C+SYNTR I
Sbjct: 263 SDTCDNKMVRILCNDCGATSEVQFHLIAHKCQKCKSYNTRQI 302

[Close]

BLAST of CmoCh01G015870 vs. ExPASy Swiss-Prot
Match: Q9FFB6 (E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.1e-34
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDST D++V+ CGHT+H  C   M  H ++ CP+CSKS+CDMS +W+K D E+AA P+
Sbjct: 169 YLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPM 228

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR 132
           P+ Y+NK+VWILCNDCG  + V++H++A KC +C SYNTR
Sbjct: 229 PKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTR 268

[Close]

BLAST of CmoCh01G015870 vs. ExPASy Swiss-Prot
Match: Q8VZK0 (E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-32
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDS  D +VM CGHT+H  C N M    +F CP+CS+SV DMSK W++ D EI AT +
Sbjct: 159 YLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQRLDEEIEATAM 218

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLI 134
           P  Y++K VWILCNDC  T++V +H++ QKC +CRSYNTR I
Sbjct: 219 PSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTRAI 260

[Close]

BLAST of CmoCh01G015870 vs. ExPASy Swiss-Prot
Match: Q96PM5 (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 42  VMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVW 101
           V+PCGH +H++C   M     + CPLC  S  DM++ W + D E+A TP+P  YQN  V 
Sbjct: 161 VLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVD 220

Query: 102 ILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           ILCNDC   S VQ+H++  KC  C SYNT   G
Sbjct: 221 ILCNDCNGRSTVQFHILGMKCKICESYNTAQAG 252

[Close]

BLAST of CmoCh01G015870 vs. ExPASy Swiss-Prot
Match: Q9CR50 (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-21
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 42  VMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVW 101
           V+PCGH +H++C   M     + CPLC  S  DM++ W + D E+A TP+P  YQN  V 
Sbjct: 161 VLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVD 220

Query: 102 ILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           ILCNDC   S VQ+H++  KC  C SYNT   G
Sbjct: 221 ILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAG 252

[Close]

BLAST of CmoCh01G015870 vs. ExPASy TrEMBL
Match: A0A6J1FKD4 (probable E3 ubiquitin-protein ligase RZFP34 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446548 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.9e-57
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI
Sbjct: 191 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 250

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 251 PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 293

[Close]

BLAST of CmoCh01G015870 vs. ExPASy TrEMBL
Match: A0A6J1FLP2 (probable E3 ubiquitin-protein ligase RZFP34 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446548 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.9e-57
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI
Sbjct: 163 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 222

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 223 PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 265

[Close]

BLAST of CmoCh01G015870 vs. ExPASy TrEMBL
Match: A0A6J1IY99 (probable E3 ubiquitin-protein ligase RZFP34 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481022 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATP+
Sbjct: 191 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPV 250

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNK+VWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 251 PEPYQNKLVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 293

[Close]

BLAST of CmoCh01G015870 vs. ExPASy TrEMBL
Match: A0A6J1J3U7 (probable E3 ubiquitin-protein ligase RZFP34 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481022 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATP+
Sbjct: 163 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPV 222

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNK+VWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 223 PEPYQNKLVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 265

[Close]

BLAST of CmoCh01G015870 vs. ExPASy TrEMBL
Match: A0A6J1BQ41 (probable E3 ubiquitin-protein ligase RZFP34 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004617 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 91/100 (91.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDV+VMPCGHTIHQ+CL  MRDHFQ+ACPLCSKSVCDMSKVWEK+DMEIAATPI
Sbjct: 204 YLFDSTNDVTVMPCGHTIHQNCLKEMRDHFQYACPLCSKSVCDMSKVWEKYDMEIAATPI 263

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR 132
           PEPYQNK+VWILCNDCGKTSKVQYH+VAQKCLNC+SYNTR
Sbjct: 264 PEPYQNKMVWILCNDCGKTSKVQYHIVAQKCLNCKSYNTR 303

[Close]

BLAST of CmoCh01G015870 vs. NCBI nr
Match: XP_022941168.1 (probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucurbita moschata] >XP_022941169.1 probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucurbita moschata] >XP_022941170.1 probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucurbita moschata] >XP_022941171.1 probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucurbita moschata])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI
Sbjct: 191 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 250

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 251 PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 293

[Close]

BLAST of CmoCh01G015870 vs. NCBI nr
Match: XP_022941172.1 (probable E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucurbita moschata])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI
Sbjct: 163 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 222

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 223 PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 265

[Close]

BLAST of CmoCh01G015870 vs. NCBI nr
Match: KAG7031826.1 (putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI
Sbjct: 149 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 208

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 209 PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 251

[Close]

BLAST of CmoCh01G015870 vs. NCBI nr
Match: KAG6608184.1 (putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI
Sbjct: 163 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 222

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 223 PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 265

[Close]

BLAST of CmoCh01G015870 vs. NCBI nr
Match: XP_022982063.1 (probable E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 4.7e-56
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATP+
Sbjct: 163 YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPV 222

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 135
           PEPYQNK+VWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
Sbjct: 223 PEPYQNKLVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG 265

[Close]

BLAST of CmoCh01G015870 vs. TAIR 10
Match: AT5G25560.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 190.7 bits (483), Expect = 7.8e-49
Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           +LF+S NDV+V+PCGHTIHQ CL  MRDH+Q+ACPLCSKSVCDMSKVWEKFDMEIAATP+
Sbjct: 205 FLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPM 264

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR 132
           PEPYQN++V ILCNDCGK ++VQYHVVAQKC NC+SYNTR
Sbjct: 265 PEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 304

[Close]

BLAST of CmoCh01G015870 vs. TAIR 10
Match: AT5G25560.3 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 190.7 bits (483), Expect = 7.8e-49
Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           +LF+S NDV+V+PCGHTIHQ CL  MRDH+Q+ACPLCSKSVCDMSKVWEKFDMEIAATP+
Sbjct: 215 FLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPM 274

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR 132
           PEPYQN++V ILCNDCGK ++VQYHVVAQKC NC+SYNTR
Sbjct: 275 PEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 314

[Close]

BLAST of CmoCh01G015870 vs. TAIR 10
Match: AT5G25560.4 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 190.7 bits (483), Expect = 7.8e-49
Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           +LF+S NDV+V+PCGHTIHQ CL  MRDH+Q+ACPLCSKSVCDMSKVWEKFDMEIAATP+
Sbjct: 200 FLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPM 259

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR 132
           PEPYQN++V ILCNDCGK ++VQYHVVAQKC NC+SYNTR
Sbjct: 260 PEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 299

[Close]

BLAST of CmoCh01G015870 vs. TAIR 10
Match: AT5G22920.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-35
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDST D++V+ CGHT+H  C   M  H ++ CP+CSKS+CDMS +W+K D E+AA P+
Sbjct: 169 YLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPM 228

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR 132
           P+ Y+NK+VWILCNDCG  + V++H++A KC +C SYNTR
Sbjct: 229 PKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTR 268

[Close]

BLAST of CmoCh01G015870 vs. TAIR 10
Match: AT5G18650.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 32  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPI 91
           YLFDS  D +VM CGHT+H  C N M    +F CP+CS+SV DMSK W++ D EI AT +
Sbjct: 159 YLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQRLDEEIEATAM 218

Query: 92  PEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLI 134
           P  Y++K VWILCNDC  T++V +H++ QKC +CRSYNTR I
Sbjct: 219 PSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTRAI 260

The following BLAST results are available for this feature:

BLAST of CmoCh01G015870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5JL96	1.9e-36	66.67	Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9FFB6	3.1e-34	57.00	E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=...	[more]
Q8VZK0	1.7e-32	56.86	E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 ...	[more]
Q96PM5	1.4e-21	47.31	RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9...	[more]
Q9CR50	1.8e-21	47.31	RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=1...	[more]

BLAST of CmoCh01G015870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKD4	7.9e-57	100.00	probable E3 ubiquitin-protein ligase RZFP34 isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1FLP2	7.9e-57	100.00	probable E3 ubiquitin-protein ligase RZFP34 isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1IY99	2.3e-56	98.06	probable E3 ubiquitin-protein ligase RZFP34 isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1J3U7	2.3e-56	98.06	probable E3 ubiquitin-protein ligase RZFP34 isoform X2 OS=Cucurbita maxima OX=36...	[more]
A0A6J1BQ41	1.3e-51	91.00	probable E3 ubiquitin-protein ligase RZFP34 isoform X1 OS=Momordica charantia OX...	[more]

BLAST of CmoCh01G015870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941168.1	1.6e-56	100.00	probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucurbita moschata] >XP_...	[more]
XP_022941172.1	1.6e-56	100.00	probable E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucurbita moschata]	[more]
KAG7031826.1	1.6e-56	100.00	putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma sub...	[more]
KAG6608184.1	1.6e-56	100.00	putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma sub...	[more]
XP_022982063.1	4.7e-56	98.06	probable E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucurbita maxima]	[more]

BLAST of CmoCh01G015870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25560.1	7.8e-49	81.00	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.3	7.8e-49	81.00	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.4	7.8e-49	81.00	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G22920.1	2.2e-35	57.00	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G18650.1	1.2e-33	56.86	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039512	RCHY1, zinc-ribbon	PFAM	PF14599	zinc_ribbon_6	coord: 73..131 e-value: 9.5E-27 score: 92.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 18..82 e-value: 1.3E-8 score: 36.1
None	No IPR available	PFAM	PF14447	Prok-RING_4	coord: 37..75 e-value: 9.5E-7 score: 28.6
None	No IPR available	GENE3D	2.20.28.10		coord: 97..134 e-value: 9.7E-18 score: 65.2
None	No IPR available	PANTHER	PTHR21319	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	coord: 31..132
None	No IPR available	PANTHER	PTHR21319:SF53	CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN	coord: 31..132
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 38..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G015870.1	CmoCh01G015870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding