CmoCh01G015510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G015510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor HY5
Location	Cmo_Chr01: 11931626 .. 11935000 (+)
RNA-Seq Expression	CmoCh01G015510
Synteny	CmoCh01G015510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATTGTCCCCTCTTCACTCATGCACATCAACTTCTTACGGTGTTGATTTCGCCGGCGCAATGCAGGAACGAACCACCGCCGCCGCCTCCGCCGGTCGTACGCGATCGAGCAGCGAAAGATCGTCGAGTTCCGCGTTTCTACTTGATGTTAAAGAAGGTTTGATTTTAGTTCCTTGTTTTGTCTTTACGATTTCTCGTGGAAAGATTGTACGTGAAGTGCTATTGGACGTCTTCTGTAGTTTTGTTTTGTTCTTTTGGTTGATGGAGACGAGTTTGTTTTGAGAAATCAGTCACCTGGCTTGGCTGTGAATGATTTTATTTGATCATCGTTTGTTTTCCTGGCCTATTTGTACGGTAAAATTGCCAGTGAATCTGTTTCGGAATGAAATAAATTATTCTAACCTGAATTCGTACCAGTTTGATAGTTTCTCCTTGTTGATTCAAGCTTTTGAAATTTTGTTGATGTAGGACCGTATATAATTAATTAATCTTAATTTCCAGGAATCGCATCCTGTTTTTGTTTCTTTGAGGGAGAATTACGTTATGATTTGTTTCTTTACCGAAGATATAGGAGTGGGAAGTGATGAGGAGGAGATAAGCAGAGTGCCGCAGATCTGCGGCAACTCTGCCTCTGCTGCCGGCGGCACTTCAGCATCTGGTAAAGCCCCTGCATCAGATGGCGTAAGGAGCAGAGGACGAAGCTCCGCTGACAAAGAAAGTAAAAGGCTTAAGAGGTAAGGTTTCTAGGTCTAGAATGGGGACCAAAGTAGCGTATTACTGCCAATTTCTTCACTCGTATCGTATGTGGAGGGATTGCAGCATCTCATTTTTGTGACACACTTTATCTCTCTCTCTCTCGTAAAGATTGTTAAGAAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAAAAGGCGTATTTGGGCGACTTGGAAATACGAGCAGCAAACTTGTTGAAAAGGAACTCCGAGCTTGAAGAGAATCTGTCCACGTTACAAAATGAGAATCAGATGCTTAGACACGTACGTCAACCAACCCCCCTCGCTTCCATTTTCTTGTTTTTAAACATTGCATGTTAATTACGTTTCCTTTCCTTTCACATATTTATGGTTATCGTTTCTCATTTTCATATTCATTTATTTCTGGTTGGTTACATCATTGAATTGCCAATAGGTTTGATCAAATTCATCACTGTTTTATCTGGAAGTATTGATTTTCTTCCATTATATTTTGGATCTTTTCTTAGAATTTGCTAGTCTATTACTCATCTTTCAATATTCCTTTTGTTGAAACAAAACATAAAATTCAATACTCATAGAGGTAGACATTTTTAAATTCAAGTATCAATTAAACTTGCTTGAACATCATAATCTATTACACCTTTACTGATTATAAATTGTGTATTTCTGATCAATTGATTTAATACAACATGAGGAGATCAAATGTACCAAGATATAGTATAATGTCGATGGACTTAAGCAATAGATATTGTTGAACGAAAAAAACATGACTATTGTTAAGGATAGTTATCATATTTAATCTTTTATTACAGGGACATTTTATTATATGCATGTATTGCTCTTTCCATTTAATATTAATTTAATTTTCTTAATTCTCAACTATTTCCATTTATTATTCATTTAATTTTCTTAATTCTCAACTATAAAGAGTAGAATCTTTTATCCTTTTCCTTCTCAGTCAAGTTCCATCGAGATTTTTGGATCCATTCTTAGATGGGGTCGGTAAGCACCTAACACTATTAGATAGGCGTTTGCCGTCATCGGAACCCCAAATAGTATCTGTTCGTGGTATAGTTATATGGGTAATTTATTTTGGTAGGTTTGCATTATTTGGGTAATTTATTTTGGTAGGTTTGTAGGGGCCATGGCACAACAGAGAATTATTTGTGCAATGAGGGAAAGAGAATATTTACATTTAGAGTAGATAGACATTTAGTTTTGCCTCTTAATTATTTTATTGTTCAATAAATACGGTGGAGAATTTAACGATGGTAATAGCTGGTTTTTACAACTATTTTGGATCATCATCTCATGAAACACTTGGTTTTTTGTATCTTATTTGTGACCATTATTAATTATGGATCCTTAGCATTCTAACCAGCTGAGGATTTATTGTTTAGGAATCTCTTATCCATTCTTAACCGTATGGATCATTTTGTTTAAATGTTTGAATTTCGAACTTTCCATATCTTGAAAGAATGGGAAATAAACCACTGTTTGATGCTATAGATTCATTAATTCATTAATTAATATCTTGTACCAACAAGTTGTTGAGGATCGGTAGGGAGTCCACGTTGACTAATTTAGGGAATGATCACGAGTTTATAAGTAAAGAATATATCTCCATTAGTATGAGGCTTTTCGGGAAGTCCAAAACTAAGTCATGAGAACTTATGTTCAAATTGGACAATATCATACCATTGTGAAGAGTCGTGATTCCTAACATGGTGTAGAGTATACCTTAAACTGTAAGGACCTAGATCCATTGCTAGTAGATATTGCCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAACACCCTTATAAATGGTGGTTTGTTCTCTTCCCCAACCAATGTGGGACATCACAATCTACCCCCTTCGGGGCCAGCATCCTCGCTGGCACTCTTTCTTTCCTCCAATCAATATGGGAGCACCCCTAAATCCAGTGTCCTTACTGGCACACTGCCTCGTGTCTACCCTCCTTCGGGGAACAGCAAGAAGTGATTGGGAGGAGAGTACATCAACTTAGCCATGTCGCCTCGAAGAGATACTGAAAAAGTGATTGAAGTGTCGAACAACAAAGGAGGTGTAGGTGTAGTATTATATTTGTCTAAGCCTCAAACTTTGTTGTTTAATCGATTGATTTCAACTATTTGTTCATATGCGTGATGAAATTGAACCATATTCTCACTGTTCAGCACTTACGTATGAACATCTTCGGTCTTTGTCTGAATCATTGTACTGGATAATCTTTGACTTTGTAATAATTTCGAAGAACCCATTAATACATCAGCTAATTGCTCTATACAGATACTAAAGAACACAACAACCAACAAGAGAAGTGATGGGGACACTGCTAATGCAAACCAGACTGTATAGCTTGGTATGACTATGTAAGTTATGGTATGTACATATTATTAATGTCGACTCGAAGGGTAAGGAACGAAAAAATGGGTCGCTTTCATTTTGATAAATTGTTTGATGTGACTGCCTCAATTGTTGATATTTTTATGAATAGTCGAATGTGTCTCTAAAGAAATTAGTTCAAATTCTTTTTGTCATTCACAACTTGAATATTTGATGTTCACAACTTGAATATTCACACGACCTATGATTATGACGTG

mRNA sequence

TCATTGTCCCCTCTTCACTCATGCACATCAACTTCTTACGGTGTTGATTTCGCCGGCGCAATGCAGGAACGAACCACCGCCGCCGCCTCCGCCGGTCGTACGCGATCGAGCAGCGAAAGATCGTCGAGTTCCGCGTTTCTACTTGATGTTAAAGAAGGAGTGGGAAGTGATGAGGAGGAGATAAGCAGAGTGCCGCAGATCTGCGGCAACTCTGCCTCTGCTGCCGGCGGCACTTCAGCATCTGGTAAAGCCCCTGCATCAGATGGCGTAAGGAGCAGAGGACGAAGCTCCGCTGACAAAGAAAGTAAAAGGCTTAAGAGATTGTTAAGAAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAAAAGGCGTATTTGGGCGACTTGGAAATACGAGCAGCAAACTTGTTGAAAAGGAACTCCGAGCTTGAAGAGAATCTGTCCACGTTACAAAATGAGAATCAGATGCTTAGACACATACTAAAGAACACAACAACCAACAAGAGAAGTGATGGGGACACTGCTAATGCAAACCAGACTGTATAGCTTGGTATGACTATGTAAGTTATGGTATGTACATATTATTAATGTCGACTCGAAGGGTAAGGAACGAAAAAATGGGTCGCTTTCATTTTGATAAATTGTTTGATGTGACTGCCTCAATTGTTGATATTTTTATGAATAGTCGAATGTGTCTCTAAAGAAATTAGTTCAAATTCTTTTTGTCATTCACAACTTGAATATTTGATGTTCACAACTTGAATATTCACACGACCTATGATTATGACGTG

Coding sequence (CDS)

ATGCAGGAACGAACCACCGCCGCCGCCTCCGCCGGTCGTACGCGATCGAGCAGCGAAAGATCGTCGAGTTCCGCGTTTCTACTTGATGTTAAAGAAGGAGTGGGAAGTGATGAGGAGGAGATAAGCAGAGTGCCGCAGATCTGCGGCAACTCTGCCTCTGCTGCCGGCGGCACTTCAGCATCTGGTAAAGCCCCTGCATCAGATGGCGTAAGGAGCAGAGGACGAAGCTCCGCTGACAAAGAAAGTAAAAGGCTTAAGAGATTGTTAAGAAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAAAAGGCGTATTTGGGCGACTTGGAAATACGAGCAGCAAACTTGTTGAAAAGGAACTCCGAGCTTGAAGAGAATCTGTCCACGTTACAAAATGAGAATCAGATGCTTAGACACATACTAAAGAACACAACAACCAACAAGAGAAGTGATGGGGACACTGCTAATGCAAACCAGACTGTATAG

Protein sequence

MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV

Homology

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BLAST of CmoCh01G015510 vs. ExPASy Swiss-Prot
Match: O24646 (Transcription factor HY5 OS=Arabidopsis thaliana OX=3702 GN=HY5 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-33
Identity = 99/169 (58.58%), Postives = 120/169 (71.01%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQI----CGNSASAAG 60
           MQE+ T++ +A    SSSERSSSSA  L++KEG+ SD EEI RVP+      G   S   
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESD-EEIRRVPEFGGEAVGKETSGRE 60

Query: 61  GTSASG----KAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIR 120
             SA+G    +A   +  R RGR+ A+KE+KRLKRLLRNRVSAQQARERKKAYL +LE R
Sbjct: 61  SGSATGQERTQATVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENR 120

Query: 121 AANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
             +L  +NSELEE LSTLQNENQMLRHILKNTT NKR  G  +NA+ ++
Sbjct: 121 VKDLENKNSELEERLSTLQNENQMLRHILKNTTGNKRGGGGGSNADASL 168

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BLAST of CmoCh01G015510 vs. ExPASy Swiss-Prot
Match: Q9SM50 (Transcription factor HY5 OS=Solanum lycopersicum OX=4081 GN=HY5 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.2e-33
Identity = 98/151 (64.90%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICG-----NSASAA 60
           MQE+ T++ +A    SSSERSSSSA   ++KEG+ SD +EI RVP++ G      SAS  
Sbjct: 1   MQEQATSSIAASSLPSSSERSSSSALHHELKEGMESD-DEIRRVPEMGGEATGTTSASGR 60

Query: 61  GGTSASGKAPASDGV-RSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAA 120
            G SA+G+A  S G  R RGRS ADKE+KRLKRLLRNRVSAQQARERKKAYL DLE R  
Sbjct: 61  DGVSAAGQAQPSAGTQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVK 120

Query: 121 NLLKRNSELEENLSTLQNENQMLRHILKNTT 146
            L  +N+ELEE LSTLQNENQMLRHILKNTT
Sbjct: 121 ELETKNAELEERLSTLQNENQMLRHILKNTT 150

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BLAST of CmoCh01G015510 vs. ExPASy Swiss-Prot
Match: Q8W191 (Transcription factor HY5-like OS=Arabidopsis thaliana OX=3702 GN=HYH PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-14
Identity = 66/140 (47.14%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 15  RSSSERSSSSAFLLDVKEGVGSDEEEISRVPQI------CGNSASAAGGTSASGKAPASD 74
           R +   SSSS+     K      +EE+  VP +      C  S+SA  G +        +
Sbjct: 5   RPNGNSSSSSS---HKKHKTEESDEELLMVPDMEAAGSTCVLSSSADDGVNNPELDQTQN 64

Query: 75  GV----RSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRNSELE 134
           GV    R RGR+  DKE + LKRLLRNRVSAQQARERKK Y+ DLE RA  L   N +LE
Sbjct: 65  GVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYVSDLESRANELQNNNDQLE 124

Query: 135 ENLSTLQNENQMLRHILKNT 145
           E +STL NEN MLR +L NT
Sbjct: 125 EKISTLTNENTMLRKMLINT 141

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BLAST of CmoCh01G015510 vs. ExPASy Swiss-Prot
Match: Q54RZ9 (Probable basic-leucine zipper transcription factor G OS=Dictyostelium discoideum OX=44689 GN=bzpG PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.0e-04
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 80  KESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRNSELEENLSTLQNENQMLR 139
           KE KR KRL++NR SA  +R+RK+  L DLE R   L   + ++ + LS+L+NEN +L+
Sbjct: 276 KELKRQKRLIKNRESAHLSRQRKRERLTDLEHRVEELSSNSIDINKTLSSLENENLILK 334

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BLAST of CmoCh01G015510 vs. ExPASy TrEMBL
Match: A0A6J1FQI7 (transcription factor HY5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446032 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 8.0e-72
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60
           MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA
Sbjct: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60

Query: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120
           SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN
Sbjct: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120

Query: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV
Sbjct: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161

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BLAST of CmoCh01G015510 vs. ExPASy TrEMBL
Match: A0A6J1IVY4 (transcription factor HY5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480422 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60
           MQERTTA ASA RTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA
Sbjct: 1   MQERTTAVASASRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60

Query: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120
           SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN
Sbjct: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120

Query: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV
Sbjct: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161

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BLAST of CmoCh01G015510 vs. ExPASy TrEMBL
Match: A0A6J1FK24 (transcription factor HY5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446032 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.6e-70
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKE--GVGSDEEEISRVPQICGNSASAAGGT 60
           MQERTTAAASAGRTRSSSERSSSSAFLLDVKE  GVGSDEEEISRVPQICGNSASAAGGT
Sbjct: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEDIGVGSDEEEISRVPQICGNSASAAGGT 60

Query: 61  SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK 120
           SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK
Sbjct: 61  SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK 120

Query: 121 RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV
Sbjct: 121 RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 163

[Close]

BLAST of CmoCh01G015510 vs. ExPASy TrEMBL
Match: A0A6J1IYV9 (transcription factor HY5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480422 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.7e-69
Identity = 159/163 (97.55%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKE--GVGSDEEEISRVPQICGNSASAAGGT 60
           MQERTTA ASA RTRSSSERSSSSAFLLDVKE  GVGSDEEEISRVPQICGNSASAAGGT
Sbjct: 1   MQERTTAVASASRTRSSSERSSSSAFLLDVKEDIGVGSDEEEISRVPQICGNSASAAGGT 60

Query: 61  SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK 120
           SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK
Sbjct: 61  SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK 120

Query: 121 RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV
Sbjct: 121 RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 163

[Close]

BLAST of CmoCh01G015510 vs. ExPASy TrEMBL
Match: A0A6J1CN91 (transcription factor HY5-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012541 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 139/173 (80.35%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MQERTTAAA----SAGRTRSSSERSSSSAFLL--DVKE--GVGSDEEEISRVPQICGNSA 60
           MQER+ AAA    +AGR RSSSERSSSSAF L  ++KE  GV SDEEEISRVPQICGNSA
Sbjct: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEDIGVDSDEEEISRVPQICGNSA 60

Query: 61  SAAGGTSASGKAPA----SDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGD 120
           S AGGTSASGKA A    SDG RSRGRS+ADKESKRLKRLLRNRVSAQQARERKKAYL +
Sbjct: 61  S-AGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNE 120

Query: 121 LEIRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           LEIRA NL KRNSELEE LSTLQNENQMLR ILKNTTTNKRSDGD ANAN+++
Sbjct: 121 LEIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 172

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BLAST of CmoCh01G015510 vs. NCBI nr
Match: XP_022940420.1 (transcription factor HY5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 279.6 bits (714), Expect = 1.7e-71
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60
           MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA
Sbjct: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60

Query: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120
           SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN
Sbjct: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120

Query: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV
Sbjct: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161

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BLAST of CmoCh01G015510 vs. NCBI nr
Match: XP_022981221.1 (transcription factor HY5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-70
Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60
           MQERTTA ASA RTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA
Sbjct: 1   MQERTTAVASASRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60

Query: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120
           SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN
Sbjct: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120

Query: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV
Sbjct: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161

[Close]

BLAST of CmoCh01G015510 vs. NCBI nr
Match: XP_022940419.1 (transcription factor HY5-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 274.6 bits (701), Expect = 5.3e-70
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKE--GVGSDEEEISRVPQICGNSASAAGGT 60
           MQERTTAAASAGRTRSSSERSSSSAFLLDVKE  GVGSDEEEISRVPQICGNSASAAGGT
Sbjct: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEDIGVGSDEEEISRVPQICGNSASAAGGT 60

Query: 61  SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK 120
           SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK
Sbjct: 61  SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK 120

Query: 121 RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV
Sbjct: 121 RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 163

[Close]

BLAST of CmoCh01G015510 vs. NCBI nr
Match: XP_023524406.1 (transcription factor HY5-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 157/161 (97.52%), Postives = 157/161 (97.52%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSA 60
           MQERT A ASAGRTRSSSERSSSSAFLLDVKEGVGSDEEE SRVPQICGNSASAAGGTSA
Sbjct: 1   MQERTAAVASAGRTRSSSERSSSSAFLLDVKEGVGSDEEETSRVPQICGNSASAAGGTSA 60

Query: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120
           SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN
Sbjct: 61  SGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRN 120

Query: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQ V
Sbjct: 121 SELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQAV 161

[Close]

BLAST of CmoCh01G015510 vs. NCBI nr
Match: XP_022981220.1 (transcription factor HY5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 7.7e-69
Identity = 159/163 (97.55%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKE--GVGSDEEEISRVPQICGNSASAAGGT 60
           MQERTTA ASA RTRSSSERSSSSAFLLDVKE  GVGSDEEEISRVPQICGNSASAAGGT
Sbjct: 1   MQERTTAVASASRTRSSSERSSSSAFLLDVKEDIGVGSDEEEISRVPQICGNSASAAGGT 60

Query: 61  SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK 120
           SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK
Sbjct: 61  SASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLK 120

Query: 121 RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
           RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV
Sbjct: 121 RNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 163

[Close]

BLAST of CmoCh01G015510 vs. TAIR 10
Match: AT5G11260.1 (Basic-leucine zipper (bZIP) transcription factor family protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-34
Identity = 99/169 (58.58%), Postives = 120/169 (71.01%), Query Frame = 0


Query: 1   MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQI----CGNSASAAG 60
           MQE+ T++ +A    SSSERSSSSA  L++KEG+ SD EEI RVP+      G   S   
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESD-EEIRRVPEFGGEAVGKETSGRE 60

Query: 61  GTSASG----KAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIR 120
             SA+G    +A   +  R RGR+ A+KE+KRLKRLLRNRVSAQQARERKKAYL +LE R
Sbjct: 61  SGSATGQERTQATVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENR 120

Query: 121 AANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 162
             +L  +NSELEE LSTLQNENQMLRHILKNTT NKR  G  +NA+ ++
Sbjct: 121 VKDLENKNSELEERLSTLQNENQMLRHILKNTTGNKRGGGGGSNADASL 168

[Close]

BLAST of CmoCh01G015510 vs. TAIR 10
Match: AT3G17609.1 (HY5-homolog )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 56/101 (55.45%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 48  CGNSASAAGGTSASGKAPASDGV----RSRGRSSADKESKRLKRLLRNRVSAQQARERKK 107
           C  S+SA  G +        +GV    R RGR+  DKE + LKRLLRNRVSAQQARERKK
Sbjct: 27  CVLSSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKK 86

Query: 108 AYLGDLEIRAANLLKRNSELEENLSTLQNENQMLRHILKNT 145
            Y+ DLE RA  L   N +LEE +STL NEN MLR +L NT
Sbjct: 87  VYVSDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 127

[Close]

BLAST of CmoCh01G015510 vs. TAIR 10
Match: AT3G17609.2 (HY5-homolog )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 66/140 (47.14%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 15  RSSSERSSSSAFLLDVKEGVGSDEEEISRVPQI------CGNSASAAGGTSASGKAPASD 74
           R +   SSSS+     K      +EE+  VP +      C  S+SA  G +        +
Sbjct: 5   RPNGNSSSSSS---HKKHKTEESDEELLMVPDMEAAGSTCVLSSSADDGVNNPELDQTQN 64

Query: 75  GV----RSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRNSELE 134
           GV    R RGR+  DKE + LKRLLRNRVSAQQARERKK Y+ DLE RA  L   N +LE
Sbjct: 65  GVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYVSDLESRANELQNNNDQLE 124

Query: 135 ENLSTLQNENQMLRHILKNT 145
           E +STL NEN MLR +L NT
Sbjct: 125 EKISTLTNENTMLRKMLINT 141

[Close]

BLAST of CmoCh01G015510 vs. TAIR 10
Match: AT3G17609.3 (HY5-homolog )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 56/101 (55.45%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 48  CGNSASAAGGTSASGKAPASDGV----RSRGRSSADKESKRLKRLLRNRVSAQQARERKK 107
           C  S+SA  G +        +GV    R RGR+  DKE + LKRLLRNRVSAQQARERKK
Sbjct: 12  CVLSSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKK 71

Query: 108 AYLGDLEIRAANLLKRNSELEENLSTLQNENQMLRHILKNT 145
            Y+ DLE RA  L   N +LEE +STL NEN MLR +L NT
Sbjct: 72  VYVSDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 112

[Close]

BLAST of CmoCh01G015510 vs. TAIR 10
Match: AT3G17609.4 (HY5-homolog )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 56/101 (55.45%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 48  CGNSASAAGGTSASGKAPASDGV----RSRGRSSADKESKRLKRLLRNRVSAQQARERKK 107
           C  S+SA  G +        +GV    R RGR+  DKE + LKRLLRNRVSAQQARERKK
Sbjct: 26  CVLSSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKK 85

Query: 108 AYLGDLEIRAANLLKRNSELEENLSTLQNENQMLRHILKNT 145
            Y+ DLE RA  L   N +LEE +STL NEN MLR +L NT
Sbjct: 86  VYVSDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 126

The following BLAST results are available for this feature:

BLAST of CmoCh01G015510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24646	3.2e-33	58.58	Transcription factor HY5 OS=Arabidopsis thaliana OX=3702 GN=HY5 PE=1 SV=1	[more]
Q9SM50	9.2e-33	64.90	Transcription factor HY5 OS=Solanum lycopersicum OX=4081 GN=HY5 PE=2 SV=1	[more]
Q8W191	4.3e-14	47.14	Transcription factor HY5-like OS=Arabidopsis thaliana OX=3702 GN=HYH PE=1 SV=1	[more]
Q54RZ9	9.0e-04	45.76	Probable basic-leucine zipper transcription factor G OS=Dictyostelium discoideum...	[more]

BLAST of CmoCh01G015510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQI7	8.0e-72	100.00	transcription factor HY5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IVY4	1.2e-70	98.76	transcription factor HY5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FK24	2.6e-70	98.77	transcription factor HY5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IYV9	3.7e-69	97.55	transcription factor HY5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1CN91	1.2e-51	80.35	transcription factor HY5-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CmoCh01G015510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940420.1	1.7e-71	100.00	transcription factor HY5-like isoform X2 [Cucurbita moschata]	[more]
XP_022981221.1	2.4e-70	98.76	transcription factor HY5-like isoform X2 [Cucurbita maxima]	[more]
XP_022940419.1	5.3e-70	98.77	transcription factor HY5-like isoform X1 [Cucurbita moschata]	[more]
XP_023524406.1	2.6e-69	97.52	transcription factor HY5-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022981220.1	7.7e-69	97.55	transcription factor HY5-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh01G015510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11260.1	2.2e-34	58.58	Basic-leucine zipper (bZIP) transcription factor family protein	[more]
AT3G17609.1	3.1e-15	55.45	HY5-homolog	[more]
AT3G17609.2	3.1e-15	47.14	HY5-homolog	[more]
AT3G17609.3	3.1e-15	55.45	HY5-homolog	[more]
AT3G17609.4	3.1e-15	55.45	HY5-homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..140
None	No IPR available	COILS	Coil	Coil	coord: 78..98
None	No IPR available	GENE3D	1.20.5.490	Single helix bin	coord: 102..143 e-value: 2.4E-16 score: 61.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60
None	No IPR available	PANTHER	PTHR46714:SF6	TRANSCRIPTIONAL ACTIVATOR HAC1	coord: 1..150
None	No IPR available	CDD	cd14704	bZIP_HY5-like	coord: 84..135 e-value: 6.33524E-16 score: 65.6734
None	No IPR available	SUPERFAMILY	57959	Leucine zipper domain	coord: 83..141
IPR004827	Basic-leucine zipper domain	SMART	SM00338	brlzneu	coord: 79..143 e-value: 1.3E-12 score: 58.0
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 80..140 e-value: 9.9E-12 score: 44.8
IPR004827	Basic-leucine zipper domain	PROSITE	PS00036	BZIP_BASIC	coord: 86..101
IPR004827	Basic-leucine zipper domain	PROSITE	PS50217	BZIP	coord: 81..144 score: 11.507094
IPR044280	Transcriptional activator Hac1/HY5	PANTHER	PTHR46714	TRANSCRIPTIONAL ACTIVATOR HAC1	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G015510.1	CmoCh01G015510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0010099	regulation of photomorphogenesis
biological_process	GO:0010218	response to far red light
biological_process	GO:0010114	response to red light
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003700	DNA-binding transcription factor activity