CmoCh01G012060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G012060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	photosynthetic NDH subunit of lumenal location 3, chloroplastic
Location	Cmo_Chr01: 9758877 .. 9759897 (+)
RNA-Seq Expression	CmoCh01G012060
Synteny	CmoCh01G012060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTCTGCCTCTTTCTATTGCCAATTCCTCCGTTTCTCTTCAAAGCTTTGCATCAATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAATGGGGCTTCTCGAGAAACAAGCGGAGGTTTCCTCTCATGAAGTCTCATTGACAAGAAGATTAGCTCTTACCAGTCTCACATCTGTCGCTCTCTTTGGCAATGCATCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTCTGCCAATCCCTTCTGTTTATAACAGTAAGCTTTCTGTTTCTTCATGTAGAATAAGTTGTAAGTCGTTTGGTGTTTGTTAGTTCATGATGAATTCTTTGTTACAGACATAGCGAACGAGAAAACAGGTACTCGATCGTTTTTGAAGACGGGGATTTACATAGCTAACATAGGGACGGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAACTATGTGAGGAAATATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGACTTAGCAAACCGATTATTCGACAACTTCGAGAAGGTAAAGAACAAAAAAGCTTACAAAAATCTGCAATTCTTGAAGCTGAAGTTTCTTGTTTCGTGTGTTTGTAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAAACTGTGGAAGTTTTTGAGAAGATTAAGGATCAGTTTCCTTTTTTTTCCACTGTTCTTCTGTTGTTCTTGTTTATAATTCGATTCGATTTTGCATCCATATATAAATGTGGCGTAACGATGCAATAATAGTGGTTCGAGTGTTTAATCTTAGTTCAAC

mRNA sequence

AAGCTCTGCCTCTTTCTATTGCCAATTCCTCCGTTTCTCTTCAAAGCTTTGCATCAATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAATGGGGCTTCTCGAGAAACAAGCGGAGGTTTCCTCTCATGAAGTCTCATTGACAAGAAGATTAGCTCTTACCAGTCTCACATCTGTCGCTCTCTTTGGCAATGCATCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTCTGCCAATCCCTTCTGTTTATAACAACATAGCGAACGAGAAAACAGGTACTCGATCGTTTTTGAAGACGGGGATTTACATAGCTAACATAGGGACGGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAACTATGTGAGGAAATATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGACTTAGCAAACCGATTATTCGACAACTTCGAGAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAAACTGTGGAAGTTTTTGAGAAGATTAAGGATCAGTTTCCTTTTTTTTCCACTGTTCTTCTGTTGTTCTTGTTTATAATTCGATTCGATTTTGCATCCATATATAAATGTGGCGTAACGATGCAATAATAGTGGTTCGAGTGTTTAATCTTAGTTCAAC

Coding sequence (CDS)

ATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAATGGGGCTTCTCGAGAAACAAGCGGAGGTTTCCTCTCATGAAGTCTCATTGACAAGAAGATTAGCTCTTACCAGTCTCACATCTGTCGCTCTCTTTGGCAATGCATCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTCTGCCAATCCCTTCTGTTTATAACAACATAGCGAACGAGAAAACAGGTACTCGATCGTTTTTGAAGACGGGGATTTACATAGCTAACATAGGGACGGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAACTATGTGAGGAAATATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGACTTAGCAAACCGATTATTCGACAACTTCGAGAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAA

Protein sequence

MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTSVALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA

Homology

[Close]

BLAST of CmoCh01G012060 vs. ExPASy Swiss-Prot
Match: Q9SGH4 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 9.5e-65
Identity = 130/223 (58.30%), Postives = 164/223 (73.54%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAE--VSSHEVSLTRRLALTSL 60
           MA   +LN ++   + +P L KL ++RK  K  G   ++ E       V +TRR+ L   
Sbjct: 1   MAHFIDLNSLT---NTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFA 60

Query: 61  TSVAL---FGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTE 120
            S+ L    G  +V +A  N +W+DGPLPIP +YNNI NEKTGTR+F+K G+Y+A+IGT+
Sbjct: 61  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTD 180
           GR YR+K+ AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAA   +KQPLTD
Sbjct: 121 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           LANRLFDNFEKLEDAAK KNL+ETE+ Y+ T  +LQEVM RMA
Sbjct: 181 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of CmoCh01G012060 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-13
Identity = 60/223 (26.91%), Postives = 104/223 (46.64%), Query Frame = 0


Query: 1   MARLANLNGVSEK-FSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLT 60
           MA +  L+G S        K++   +     ++      +  V + +   T R ++  L 
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNASVEIASANEYWLD-GPLPIPSVYNNIANEKTG-TRSF---LKTGIYIANIGT 120
           +  L G + V+   A+   +  GP P PS       + +   R F   LK   Y+  +  
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPP 120

Query: 121 EGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT 180
                R K  A D++ +  LI +    YV+  LR K++++ YD + +IS+    EK+ L 
Sbjct: 121 TEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLK 180

Query: 181 DLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 DLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CmoCh01G012060 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 57/188 (30.32%), Postives = 89/188 (47.34%), Query Frame = 0


Query: 35  LLEKQAEVSSHEVSLTRRLALTSLTSVALFGNASVE--IASANEYWLDGPLPIPSVYNNI 94
           ++  Q  VS  E S   R ++  L +  L G + V+   A A    + GP P+PS     
Sbjct: 46  VIRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPG 105

Query: 95  ANEKTGTRSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRL 154
            +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL
Sbjct: 106 TDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRL 165

Query: 155 KSTFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPI 214
           +++++ YD + VISA    EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   
Sbjct: 166 RASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSS 225

Query: 215 LQEVMDRM 218
           L  V+ ++
Sbjct: 226 LNNVLAKL 229

[Close]

BLAST of CmoCh01G012060 vs. ExPASy Swiss-Prot
Match: P12301 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBQ PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 62/229 (27.07%), Postives = 106/229 (46.29%), Query Frame = 0


Query: 1   MARLANLNGVSE-------KFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRL 60
           MA +A L G S+       + S   +LS    +R     MGL  +  +VS+   + T R 
Sbjct: 5   MASMAGLRGASQAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAE--AETSRR 64

Query: 61  ALTSLTSVALFGNASVE--IASANEYWLDGPLPIPSVYNNIANE---KTGTRSFLKTGIY 120
           A+    +  L   + V+  +A A    +  P P+        N    + GT  + K   Y
Sbjct: 65  AMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFY 124

Query: 121 IANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDG 180
           +  +       R K  A ++L +   I +     ++  LRL+++++ YD   VISA    
Sbjct: 125 LQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKD 184

Query: 181 EKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           EK+ L +L ++LF + + L+ AAK K+ +E E YY QT   + EV+ ++
Sbjct: 185 EKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231

[Close]

BLAST of CmoCh01G012060 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-10
Identity = 45/169 (26.63%), Postives = 79/169 (46.75%), Query Frame = 0


Query: 50  TRRLALTSLTSVALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYI 109
           TRR  LTSL +  + G A+   +SA                 +A EK GTRSF+K   ++
Sbjct: 42  TRRRTLTSLITFTVIGGAT---SSA-----------------LAQEKWGTRSFIKEKYFM 101

Query: 110 ANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGE 169
             +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   +  
Sbjct: 102 PGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESR 161

Query: 170 KQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           +      AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 162 RNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CmoCh01G012060 vs. ExPASy TrEMBL
Match: A0A6J1FHS2 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445892 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.9e-114
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of CmoCh01G012060 vs. ExPASy TrEMBL
Match: A0A6J1IZZ5 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480674 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.3e-112
Identity = 213/218 (97.71%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNGVSEKFSAIPKLSKL+KTRKRSKIMGLLEKQAEVSSH +SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of CmoCh01G012060 vs. ExPASy TrEMBL
Match: A0A6J1CCI9 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010414 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.4e-105
Identity = 200/218 (91.74%), Postives = 206/218 (94.50%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNGVS+KFSAIPKL KLQ  RKR KI+G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of CmoCh01G012060 vs. ExPASy TrEMBL
Match: A0A0A0L7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.7e-97
Identity = 189/218 (86.70%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNG   KFSAIP L KLQ   KR KI G L+KQ +VSSH++SLTRRLALTSL S
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWLDGPLP+PSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of CmoCh01G012060 vs. ExPASy TrEMBL
Match: A0A5A7TX10 (Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00750 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.7e-96
Identity = 188/218 (86.24%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNG   KFSAIP L KLQ   K+ KI G L+KQ +VSSH++SLTRRLALTSL S
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWLDGPLP+PSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLE+AAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of CmoCh01G012060 vs. NCBI nr
Match: XP_022940191.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 420.6 bits (1080), Expect = 8.1e-114
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of CmoCh01G012060 vs. NCBI nr
Match: XP_022981605.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 213/218 (97.71%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNGVSEKFSAIPKLSKL+KTRKRSKIMGLLEKQAEVSSH +SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of CmoCh01G012060 vs. NCBI nr
Match: KAG7015220.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412.5 bits (1059), Expect = 2.2e-111
Identity = 213/218 (97.71%), Postives = 214/218 (98.17%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKI GLLEKQ EVSSHE+SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of CmoCh01G012060 vs. NCBI nr
Match: KAG6607822.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 212/218 (97.25%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKI GLLEKQ EVSSHE+SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIA IGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIAKIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of CmoCh01G012060 vs. NCBI nr
Match: XP_023525405.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.7 bits (1049), Expect = 3.2e-110
Identity = 211/218 (96.79%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKI G LEKQAEVSSHE+SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLK GIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of CmoCh01G012060 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 248.1 bits (632), Expect = 6.7e-66
Identity = 130/223 (58.30%), Postives = 164/223 (73.54%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAE--VSSHEVSLTRRLALTSL 60
           MA   +LN ++   + +P L KL ++RK  K  G   ++ E       V +TRR+ L   
Sbjct: 1   MAHFIDLNSLT---NTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFA 60

Query: 61  TSVAL---FGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTE 120
            S+ L    G  +V +A  N +W+DGPLPIP +YNNI NEKTGTR+F+K G+Y+A+IGT+
Sbjct: 61  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTD 180
           GR YR+K+ AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAA   +KQPLTD
Sbjct: 121 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           LANRLFDNFEKLEDAAK KNL+ETE+ Y+ T  +LQEVM RMA
Sbjct: 181 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of CmoCh01G012060 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 78.6 bits (192), Expect = 7.1e-15
Identity = 60/222 (27.03%), Postives = 103/222 (46.40%), Query Frame = 0


Query: 1   MARLANLNGVSEK-FSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLT 60
           MA +  L+G S        K++   +     ++      +  V + +   T R ++  L 
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNASVEIASANEYWLD-GPLPIPSVYNNIANEKTGTRSF---LKTGIYIANIGTE 120
           +  L G + V+   A+   +  GP P PS      +     R F   LK   Y+  +   
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQPLPPT 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTD 180
               R K  A D++ +  LI +    YV+  LR K++++ YD + +IS+    EK+ L D
Sbjct: 121 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           L  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of CmoCh01G012060 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-14
Identity = 60/223 (26.91%), Postives = 104/223 (46.64%), Query Frame = 0


Query: 1   MARLANLNGVSEK-FSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLT 60
           MA +  L+G S        K++   +     ++      +  V + +   T R ++  L 
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNASVEIASANEYWLD-GPLPIPSVYNNIANEKTG-TRSF---LKTGIYIANIGT 120
           +  L G + V+   A+   +  GP P PS       + +   R F   LK   Y+  +  
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPP 120

Query: 121 EGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT 180
                R K  A D++ +  LI +    YV+  LR K++++ YD + +IS+    EK+ L 
Sbjct: 121 TEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLK 180

Query: 181 DLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 DLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CmoCh01G012060 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 57/188 (30.32%), Postives = 89/188 (47.34%), Query Frame = 0


Query: 35  LLEKQAEVSSHEVSLTRRLALTSLTSVALFGNASVE--IASANEYWLDGPLPIPSVYNNI 94
           ++  Q  VS  E S   R ++  L +  L G + V+   A A    + GP P+PS     
Sbjct: 46  VIRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPG 105

Query: 95  ANEKTGTRSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRL 154
            +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL
Sbjct: 106 TDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRL 165

Query: 155 KSTFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPI 214
           +++++ YD + VISA    EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   
Sbjct: 166 RASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSS 225

Query: 215 LQEVMDRM 218
           L  V+ ++
Sbjct: 226 LNNVLAKL 229

[Close]

BLAST of CmoCh01G012060 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-11
Identity = 45/169 (26.63%), Postives = 79/169 (46.75%), Query Frame = 0


Query: 50  TRRLALTSLTSVALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYI 109
           TRR  LTSL +  + G A+   +SA                 +A EK GTRSF+K   ++
Sbjct: 42  TRRRTLTSLITFTVIGGAT---SSA-----------------LAQEKWGTRSFIKEKYFM 101

Query: 110 ANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGE 169
             +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   +  
Sbjct: 102 PGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESR 161

Query: 170 KQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           +      AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 162 RNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

The following BLAST results are available for this feature:

BLAST of CmoCh01G012060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGH4	9.5e-65	58.30	Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t...	[more]
Q9XFT3	3.8e-13	26.91	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41932	1.6e-11	30.32	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P12301	1.6e-11	27.07	Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 G...	[more]
Q9XI73	3.0e-10	26.63	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]

BLAST of CmoCh01G012060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHS2	3.9e-114	100.00	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1IZZ5	6.3e-112	97.71	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita max...	[more]
A0A6J1CCI9	7.4e-105	91.74	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica cha...	[more]
A0A0A0L7N1	5.7e-97	86.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1	[more]
A0A5A7TX10	1.7e-96	86.24	Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of CmoCh01G012060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940191.1	8.1e-114	100.00	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita mosch...	[more]
XP_022981605.1	1.3e-111	97.71	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxim...	[more]
KAG7015220.1	2.2e-111	97.71	Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyr...	[more]
KAG6607822.1	1.1e-110	97.25	Photosynthetic NDH subunit of lumenal location 3, chloroplastic, partial [Cucurb...	[more]
XP_023525405.1	3.2e-110	96.79	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita pepo ...	[more]

BLAST of CmoCh01G012060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01440.1	6.7e-66	58.30	PsbQ-like 1	[more]
AT4G21280.1	7.1e-15	27.03	photosystem II subunit QA	[more]
AT4G21280.2	2.7e-14	26.91	photosystem II subunit QA	[more]
AT4G05180.1	1.1e-12	30.32	photosystem II subunit Q-2	[more]
AT1G14150.1	2.1e-11	26.63	PsbQ-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 24..218 e-value: 2.4E-55 score: 187.4
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..218
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 80..218 e-value: 2.1E-45 score: 156.4
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 108..218
None	No IPR available	PANTHER	PTHR33399:SF2	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC	coord: 1..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G012060.1	CmoCh01G012060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity