CmoCh01G011070 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G011070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	heterogeneous nuclear ribonucleoprotein 1-like
Location	Cmo_Chr01: 9201609 .. 9204747 (-)
RNA-Seq Expression	CmoCh01G011070
Synteny	CmoCh01G011070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCAATTCGGAATTCCACTGAAAACCTAAATCAACGATCTTTCATCTTCTTCTCCACGTCTTATCGATCTTCTTCGACAACACATCCGCCAGCCAAATTCCTCATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCAGGGTTTGTTTCTTTTCCTTTCTCAATTTTTATTTTCTTTTCGTGTTTCTCTGAGAATGTTTGATGAGTTGGGGAAAAGGGCTTTCTTAAGCGCCAGATTCCATTCCTATATGTCGTCCCCCTCTCAGGCCTGTCAAACAGTTCCTTTGTCTTGATTTTCTTTAGATCTCGATTTTGTGTTCTCACTTTTTTGCTATTTTTGTTTTCCCAGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACAGTGAGTTTTTGTTTTATTTTAATCATGTATTAGGAACGAGTTTCTGTACCCATGTTTAATTCTGCTGAAATTACCTGTTATTCTTGATGGGTGTTCATTTTTTGAATGGCTAGCTTAGCACCTCTTCTATTGCGGTTCATTGATAATTAAATAAATTCTTGATTTGCTAATTCTGTATATTGATTAAGTGCAATGTTAGCTTAGATTCGGCTGCAGCTGATGTTCTTTTTCATTGTGTTCTTGGAAAAATTAGCTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACACGTCATCAATGGAAAACAGGTACGTCTTCTTAATTATTTTGTTTTTCTTCTTCCTGCTAACTGGCTTACACCACATTATATTCTACTGGATTGTTGAATGGCGTAAAATATTTTTGTTTTCCGTGGTCTTATGAGGTTAATTATGAGTCTTTTTCTGTATTTTATTGGATGGTTTATAATTTTCCCTTGTTATTACCCTTCATCCCCTTTTTTCGTGATACAGTTGTAATATGATTGTTGTTGCATGAATTTGTTCTTTATTTATTTTATTTCTGGGATTTACTTTGCTAAATGGAGATAGGTTGAAATCAAGAGAACCATCCCAAAAGGACAAGGTCAATCAAAGGATTTTAAGACTAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGGTAAGGTTATTGAGTTATATGTTGAAGCGTGTTCTTTATTGGCAGAACCAGTGTTTGTTTCAGCCACTTTTTATTTGTTCTTCTCATATTGATGTAGTTTCTATGTTGTGTTTTAATATGTTTATTACGTATCTTGCTTGTAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATAAACGGACCGCAAGTGAGCAAAGTGTAAACCAAATTGTGTTTCCCATGGGTTTTGCACCATCGTATTTTCCAGTTTTAATAACAATGGACAATTTTCAACCCTTTCACTTTATACAATCGTATCTTTTAAGTATTATGCGATTAGCTGCTTCTTTTTGCTACTAATTTTAGGTTGAGGTTATACAGGTATAGATCTTCTAAGGCAAGGGCTATCAGAATAGTTAAATTGCAGAAGATCTAGGTTAACTAAGTTACTTTGTTGTAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATAGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTCGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGTAGGATCGTTGCGTAGTCAGTACCGTCCATCTCCTTGGAAGCTAGAACAGAAGTCTCACTCGAACGCTGTCTCGCCTAAGAATTGCCATAGAGTTTTTCAAACACACAGGTTCCTTTAGGTTTGTGGCCCAGTGATAGGCAGTGTTCTCTCACAAATACTAGAGGTCCAAGGATGCTTTGGAAAAAGACGAGAAAGAGTGTATTAGACTTTTTATTGTATGGTTTTAGACACTATTATGTAGACTACACTACTGCAAGCTAGTTTATGCCTAATATGGTTGTCCCCATCTAGTACAATTTCAATGTAGTGTGCTGTGCTGCTCTGCTGTAGGCTTTAGCATACACTTATATTTCTCGGTTATGTTTATTCGTCACGTTAGTTCGATAAACTAGATAGAGAGATTAGATGTATATTATTTCCTAACACGCCCTGGTAGTCTTATACTCTTTATTTTAGTTTACAGAACGTGATAGACACAGGAAGAGTAAAATATAATCCTCCCAGTTCTTACTGATAGTTTTAGGGGACCGAGCGGGAAATGTAGGATGAGGCACATCACGTTTATCGATATGTTGATTAGATAGATAGAGGATTCTTGTTTTGATATTGAGATTAATTCATTATGTTCTTGGCCTTTTGAGTGATCTGCTGAAGCTGTACTGGTGCTTGCCATGGAAGCTATTTCTACAATTATTTTTTTATTTTATTTTATTTTTAATGATTTTAGGGTAAATAATATTGAAGCCAAGTTACCATGCACAATTGAAGTCTCTGTAATTTCTTCATTAATTTTTTTTTATTTTTTTGTAATGAAGTTTATTTGTTAA

mRNA sequence

CTCTTTCAATTCGGAATTCCACTGAAAACCTAAATCAACGATCTTTCATCTTCTTCTCCACGTCTTATCGATCTTCTTCGACAACACATCCGCCAGCCAAATTCCTCATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCAGGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACACTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACACGTCATCAATGGAAAACAGGTTGAAATCAAGAGAACCATCCCAAAAGGACAAGGTCAATCAAAGGATTTTAAGACTAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGGTAAGGTTATTGAGTTATATGTTGAAGCGTGTTCTTTATTGGCAGAACCATTTCTATGTTGTGTTTTAATATGTTTATTACGTATCTTGCTTGTAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATAAACGGACCGCAAGTGAGCAAAGTGTAAACCAAATTGTGTTTCCCATGGGTTTTGCACCATCGTATTTTCCAGTTTTAATAACAATGGACAATTTTCAACCCTTTCACTTTATACAATCGTTGAGGTTATACAGGTATAGATCTTCTAAGGCAAGGGCTATCAGAATAGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATAGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTCGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGGTAAATAATATTGAAGCCAAGTTACCATGCACAATTGAAGTCTCTTTTATTTGTTAA

Coding sequence (CDS)

ATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCAGGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACACTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACACGTCATCAATGGAAAACAGGTTGAAATCAAGAGAACCATCCCAAAAGGACAAGGTCAATCAAAGGATTTTAAGACTAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGGTAAGGTTATTGAGTTATATGTTGAAGCGTGTTCTTTATTGGCAGAACCATTTCTATGTTGTGTTTTAATATGTTTATTACGTATCTTGCTTGTAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATAAACGGACCGCAAGTGAGCAAAGTGTAAACCAAATTGTGTTTCCCATGGGTTTTGCACCATCGTATTTTCCAGTTTTAATAACAATGGACAATTTTCAACCCTTTCACTTTATACAATCGTTGAGGTTATACAGGTATAGATCTTCTAAGGCAAGGGCTATCAGAATAGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATAGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTCGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGGTAAATAATATTGAAGCCAAGTTACCATGCACAATTGAAGTCTCTTTTATTTGTTAA

Protein sequence

MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEGKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLITMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYARVNNIEAKLPCTIEVSFIC

Homology

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BLAST of CmoCh01G011070 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.6e-27
Identity = 135/443 (30.47%), Postives = 201/443 (45.37%), Query Frame = 0


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GG++ +T   +  +HF +YGE++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 79  DTHVINGKQVEIKRTI----------------PKGQGQSKDFKTKKIFVGGIPSTVTEGK 138
           + H I+ ++V++KR +                 +  G     KTKKIFVGG+P T+T+  
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD-- 125

Query: 139 VIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRGF 198
                                         +E + +F  +G V +  I+ D  TNR RGF
Sbjct: 126 ------------------------------EEFRQYFEVYGPVTDVAIMYDQATNRPRGF 185

Query: 199 GFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLITM 258
           GF+ FD E+ VD +L K    D+SG QV + +    + +       MG   S        
Sbjct: 186 GFVSFDSEDAVDSVLHK-TFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGS-------- 245

Query: 259 DNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGF 318
             +Q +   +S   Y  R    R ++   +    P   S+   A  YG+ S    +   +
Sbjct: 246 GGYQGYGGNES--SYDGRMDSNRFLQHQSVGNGLPSYGSSGYGA-GYGNGSNGAGYG-AY 305

Query: 319 GGYGGSYGDFDAGFGPGPFRTAG-GLGGRIGGGYGYGSG--------GDFGGGYGGFGSS 378
           GGY GS G + AG       TAG G     G GYG  +G             GYG  G  
Sbjct: 306 GGYTGSAGGYGAG------ATAGYGATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYG 365

Query: 379 SLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPG 437
           S   + G    G +      SG    GY   G GGY     GYG+    G  GG  SG G
Sbjct: 366 SGAAHSGYGVPGAAPPTQSPSGYSNQGY---GYGGYSGSDSGYGNQAAYGVVGGRPSGGG 394

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BLAST of CmoCh01G011070 vs. ExPASy Swiss-Prot
Match: P21522 (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana OX=7009 GN=HNRNP PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-19
Identity = 140/442 (31.67%), Postives = 185/442 (41.86%), Query Frame = 0


Query: 8   ENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITY 67
           EN H G+     K+FIGGL   TT     +HF  +GEI D V+MKD  T + RGFGFITY
Sbjct: 7   ENDH-GEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 66

Query: 68  ADPSVVDKVIE-DTHVINGKQVEIKRTIPKGQ-GQSKDFKT-KKIFVGGIPSTVTEGKVI 127
           +   +VD       H ++G+ VE KR +P+ + G+ +   T KK+FVGGI   + E    
Sbjct: 67  SRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEE---- 126

Query: 128 ELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRGFGF 187
                                       ++L+ +F ++G VV   I+ D ET + RGF F
Sbjct: 127 ----------------------------NDLRDYFKQYGTVVSAAIVVDKETRKKRGFAF 186

Query: 188 IVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLITMDN 247
           + FD+ + VD+I    N                                           
Sbjct: 187 VEFDDYDPVDKICLSRN------------------------------------------- 246

Query: 248 FQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGG 307
               H I+               + +++KKA PK  +        G   R        GG
Sbjct: 247 ----HQIRG--------------KHIDVKKALPKGDA----PGGRGGGGRGGVGGGAGGG 306

Query: 308 YGGSYGDFDAGFGPG---------PFRTA--------GGLGGRIGGGYGYGSGGDFGGG- 367
           +GG  GD+    G G         P+           GG GG +GGG  +G GG  GGG 
Sbjct: 307 WGGGRGDWGGSAGGGGGGGWGGADPWENGRGGGGDRWGGGGGGMGGGDRWGGGGGMGGGD 338

Query: 368 -YGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYG 427
            YGG G  S GG+   S+ GY+S  GP S GFGGGY  S  GG  RG  GYG    + Y 
Sbjct: 367 RYGGGGGRS-GGW---SNDGYNS--GPQSDGFGGGYKQSYGGGAVRGSSGYGGSRSAPYS 338

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BLAST of CmoCh01G011070 vs. ExPASy Swiss-Prot
Match: P09651 (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-18
Identity = 130/432 (30.09%), Postives = 176/432 (40.74%), Query Frame = 0


Query: 5   SKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGF 64
           SKSE+P   +     K+FIGGL+ +TT      HF  +G +TD V+M+D  T + RGFGF
Sbjct: 2   SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 61

Query: 65  ITYADPSVVDKVIE-DTHVINGKQVEIKRTIPKGQGQ--SKDFKTKKIFVGGIPSTVTEG 124
           +TYA    VD  +    H ++G+ VE KR + +   Q        KKIFVGGI     E 
Sbjct: 62  VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEE- 121

Query: 125 KVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRG 184
                                            L+ +F ++GK+   +I+ D  + + RG
Sbjct: 122 -------------------------------HHLRDYFEQYGKIEVIEIMTDRGSGKKRG 181

Query: 185 FGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLIT 244
           F F+ FD+ + VD+I+                                            
Sbjct: 182 FAFVTFDDHDSVDKIV-------------------------------------------- 241

Query: 245 MDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDG 304
               Q +H +                        E +K+ +     +  S+ R RS +  
Sbjct: 242 ---IQKYHTVNG-------------------HNCEVRKALSKQEMASASSSQRGRSGSGN 301

Query: 305 F-GGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 364
           F GG GG +G  D     G F   GG GG  GGG GYG  GD   GY GFG+   GGY G
Sbjct: 302 FGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGG-GYGGSGD---GYNGFGND--GGY-G 322

Query: 365 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 424
               GYS     Y  G G GYG  G  GYG G   Y SY   G GGG+  G G+++GG G
Sbjct: 362 GGGPGYSGGSRGYGSG-GQGYGNQG-SGYG-GSGSYDSYNNGG-GGGFGGGSGSNFGGGG 322

Query: 425 GLYGRGGYSGSS 433
                G Y+  S
Sbjct: 422 SYNDFGNYNNQS 322

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BLAST of CmoCh01G011070 vs. ExPASy Swiss-Prot
Match: Q8BG05 (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-18
Identity = 135/442 (30.54%), Postives = 177/442 (40.05%), Query Frame = 0


Query: 20  KIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 79
           K+FIGGL+ +TT     +HF  +G +TD V+M+D  T + RGFGF+TY+    VD  +  
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 80  DTHVINGKQVEIKRTIPKGQG--QSKDFKTKKIFVGGIPSTVTEGKVIELYVEACSLLAE 139
             H ++G+ VE KR + +            KKIFVGGI     E                
Sbjct: 96  RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEE---------------- 155

Query: 140 PFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEI 199
                             L+ +F K+GK+   +++ D ++ + RGF F+ FD+ + VD+I
Sbjct: 156 ----------------YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 215

Query: 200 LSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLITMDNFQPFHFIQSLRL 259
           +                                                Q +H I     
Sbjct: 216 V-----------------------------------------------VQKYHTING--- 275

Query: 260 YRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 319
                         E+KKA  K+        + GS       +  F G GG++G     F
Sbjct: 276 -----------HNCEVKKALSKQEMQ-----SAGSQRGRGGGSGNFMGRGGNFGGGGGNF 335

Query: 320 G-PGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSG 379
           G  G F   GG GG  GG  G   GGD  GGY GFG    G Y G    GYSSR G Y G
Sbjct: 336 GRGGNFGGRGGYGGGGGGSRGSYGGGD--GGYNGFGGDG-GNYGG--GPGYSSR-GGYGG 372

Query: 380 GFGGGYGT--SGLGGYGRGVDGY---GSYGGSGYGGG----------------YDSGPGA 431
           G G GYG    G GG G G DGY   G++GG  YGGG                Y    G 
Sbjct: 396 G-GPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGG 372

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BLAST of CmoCh01G011070 vs. ExPASy Swiss-Prot
Match: Q6URK4 (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-18
Identity = 135/442 (30.54%), Postives = 177/442 (40.05%), Query Frame = 0


Query: 20  KIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 79
           K+FIGGL+ +TT     +HF  +G +TD V+M+D  T + RGFGF+TY+    VD  +  
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 80  DTHVINGKQVEIKRTIPKGQG--QSKDFKTKKIFVGGIPSTVTEGKVIELYVEACSLLAE 139
             H ++G+ VE KR + +            KKIFVGGI     E                
Sbjct: 96  RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEE---------------- 155

Query: 140 PFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEI 199
                             L+ +F K+GK+   +++ D ++ + RGF F+ FD+ + VD+I
Sbjct: 156 ----------------YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 215

Query: 200 LSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLITMDNFQPFHFIQSLRL 259
           +                                                Q +H I     
Sbjct: 216 V-----------------------------------------------VQKYHTING--- 275

Query: 260 YRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 319
                         E+KKA  K+        + GS       +  F G GG++G     F
Sbjct: 276 -----------HNCEVKKALSKQEMQ-----SAGSQRGRGGGSGNFMGRGGNFGGGGGNF 335

Query: 320 G-PGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSG 379
           G  G F   GG GG  GG  G   GGD  GGY GFG    G Y G    GYSSR G Y G
Sbjct: 336 GRGGNFGGRGGYGGGGGGSRGSYGGGD--GGYNGFGGDG-GNYGG--GPGYSSR-GGYGG 372

Query: 380 GFGGGYGT--SGLGGYGRGVDGY---GSYGGSGYGGG----------------YDSGPGA 431
           G G GYG    G GG G G DGY   G++GG  YGGG                Y    G 
Sbjct: 396 G-GPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGG 372

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BLAST of CmoCh01G011070 vs. ExPASy TrEMBL
Match: A0A6J1IWT7 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480620 PE=4 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 4.2e-174
Identity = 347/439 (79.04%), Postives = 347/439 (79.04%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DELKHFFSKFGKVVEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DELKHFFSKFGKVVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVFDEEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNPPPAPAYGSNSRARSFND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG
Sbjct: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. ExPASy TrEMBL
Match: A0A6J1FLG0 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446490 PE=4 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 4.2e-174
Identity = 347/439 (79.04%), Postives = 347/439 (79.04%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DELKHFFSKFGKVVEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DELKHFFSKFGKVVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVFDEEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNPPPAPAYGSNSRARSFND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG
Sbjct: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. ExPASy TrEMBL
Match: A0A5A7U1Z1 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001410 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 4.9e-167
Identity = 333/439 (75.85%), Postives = 340/439 (77.45%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DE KHFFSK+GK+VEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DEFKHFFSKYGKIVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVF+EEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFEEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNP PAPAYGSNSRARSFND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPLPAPAYGSNSRARSFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFR  GG+GGRIG GYGYGSGGDFGGGYGGFG +SLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           +SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYG SGYGGGYDSGPGASYGGAG
Sbjct: 361 DSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. ExPASy TrEMBL
Match: A0A1S3CI79 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501266 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 4.9e-167
Identity = 333/439 (75.85%), Postives = 340/439 (77.45%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DE KHFFSK+GK+VEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DEFKHFFSKYGKIVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVF+EEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFEEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNP PAPAYGSNSRARSFND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPLPAPAYGSNSRARSFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFR  GG+GGRIG GYGYGSGGDFGGGYGGFG +SLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           +SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYG SGYGGGYDSGPGASYGGAG
Sbjct: 361 DSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. ExPASy TrEMBL
Match: A0A0A0K3W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278740 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 1.1e-166
Identity = 332/439 (75.63%), Postives = 340/439 (77.45%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DE KHFFSK+GK+VEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DEFKHFFSKYGKIVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVF+EEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFEEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNP PAPAYGSNSRAR+FND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPLPAPAYGSNSRARTFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFR  GG+GGRIG GYGYGSGGDFGGGYGGFG +SLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           +SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYG SGYGGGYDSGPGASYGGAG
Sbjct: 361 DSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. NCBI nr
Match: KAG7037314.1 (Heterogeneous nuclear ribonucleoprotein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 624.8 bits (1610), Expect = 5.9e-175
Identity = 348/439 (79.27%), Postives = 350/439 (79.73%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DELKHFFSKFGKVVEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DELKHFFSKFGKVVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVFDEEEVVDEILSKGNMIDMSGTQV + +                          
Sbjct: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQ-------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNPPPAPAYGSNSRARSFND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 352

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG
Sbjct: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 352

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 352

[Close]

BLAST of CmoCh01G011070 vs. NCBI nr
Match: XP_022941092.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata] >XP_022981531.1 heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima] >KAG6607739.1 Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 620.9 bits (1600), Expect = 8.6e-174
Identity = 347/439 (79.04%), Postives = 347/439 (79.04%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DELKHFFSKFGKVVEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DELKHFFSKFGKVVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVFDEEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNPPPAPAYGSNSRARSFND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG
Sbjct: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. NCBI nr
Match: XP_023525200.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 618.6 bits (1594), Expect = 4.3e-173
Identity = 346/439 (78.82%), Postives = 346/439 (78.82%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DELKHFFSKFGKVVEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DELKHFFSKFGKVVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVFDEEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNPPPAPAYGSNSRARSFND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGY GGYDSGPGASYGGAG
Sbjct: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYSGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. NCBI nr
Match: XP_008463022.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo] >KAA0048257.1 heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa] >TYK08000.1 heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 597.4 bits (1539), Expect = 1.0e-166
Identity = 333/439 (75.85%), Postives = 340/439 (77.45%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DE KHFFSK+GK+VEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DEFKHFFSKYGKIVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVF+EEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFEEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNP PAPAYGSNSRARSFND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPLPAPAYGSNSRARSFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFR  GG+GGRIG GYGYGSGGDFGGGYGGFG +SLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           +SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYG SGYGGGYDSGPGASYGGAG
Sbjct: 361 DSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. NCBI nr
Match: XP_004149406.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN44390.1 hypothetical protein Csa_015841 [Cucumis sativus])

HSP 1 Score: 596.3 bits (1536), Expect = 2.3e-166
Identity = 332/439 (75.63%), Postives = 340/439 (77.45%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 GKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSR 180
                                           DE KHFFSK+GK+VEHQIIRDHETNRSR
Sbjct: 121 --------------------------------DEFKHFFSKYGKIVEHQIIRDHETNRSR 180

Query: 181 GFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLI 240
           GFGFIVF+EEEVVDEILSKGNMIDMSGTQ                               
Sbjct: 181 GFGFIVFEEEEVVDEILSKGNMIDMSGTQ------------------------------- 240

Query: 241 TMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFND 300
                                        VEIKKAEPKKSSNP PAPAYGSNSRAR+FND
Sbjct: 241 -----------------------------VEIKKAEPKKSSNPLPAPAYGSNSRARTFND 300

Query: 301 GFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRG 360
           GFGGYGGSYGDFDAGFGPGPFR  GG+GGRIG GYGYGSGGDFGGGYGGFG +SLGGYRG
Sbjct: 301 GFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRG 347

Query: 361 ESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAG 420
           +SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYG SGYGGGYDSGPGASYGGAG
Sbjct: 361 DSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAG 347

Query: 421 GLYGRGGYSGSSRYHPYAR 440
           GLYGRGGYSGSSRYHPYAR
Sbjct: 421 GLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmoCh01G011070 vs. TAIR 10
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 416.4 bits (1069), Expect = 3.0e-116
Identity = 266/452 (58.85%), Postives = 290/452 (64.16%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M S+S+++N  +GDGASPGKIFIGGL KDTT T FNKHFG YGEITDSVIM+DR+TGQPR
Sbjct: 1   MGSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQG--QSKDFKTKKIFVGGIPSTV 120
           GFGFIT+ADPSVVDKVIEDTHVINGKQVEIKRTIPKG G  QSKD KTKKIFVGGIPSTV
Sbjct: 61  GFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTV 120

Query: 121 TEGKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNR 180
           TE                                DELK FF+K+G VVEHQ+IRDHETNR
Sbjct: 121 TE--------------------------------DELKDFFAKYGNVVEHQVIRDHETNR 180

Query: 181 SRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPV 240
           SRGFGF++FD EEVVDE+LSKGNMIDM+ TQ                             
Sbjct: 181 SRGFGFVIFDSEEVVDELLSKGNMIDMADTQ----------------------------- 240

Query: 241 LITMDNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSF 300
                                          VEIKKAEPKKS N  P P+YGS+ R RS 
Sbjct: 241 -------------------------------VEIKKAEPKKSLNRSP-PSYGSHPRGRSS 300

Query: 301 NDGFGGYGGSYGDFDAGFG--PGPFRTAGGLGGRIGGGYGYGSGG---DFGGGYGGFGSS 360
           ND +  YGG YG FD G+G  PGP R+ GG   R  GGYGYG G    +FGGGY  +G  
Sbjct: 301 NDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGG 358

Query: 361 SLGGYRGESSLGYSSRFGPYSGGFGG-GYGTSGLG---GYGR-GVDGYGSYGGSGYGGGY 420
           SLGGYR E  LGYSSRFGPY  GFGG GYG  G G   GY R G +GYG YGG GYGG Y
Sbjct: 361 SLGGYRNEPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGGAY 358

Query: 421 DS-GPGASYGGAGGLYGRGGYSGSSRYHPYAR 440
           +S GPG SY GAGG YGR GYS SSRYHPYAR
Sbjct: 421 ESGGPGGSYEGAGGPYGR-GYSSSSRYHPYAR 358

[Close]

BLAST of CmoCh01G011070 vs. TAIR 10
Match: AT3G13224.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 300.1 bits (767), Expect = 3.1e-81
Identity = 154/216 (71.30%), Postives = 169/216 (78.24%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M S+S+++N  +GDGASPGKIFIGGL KDTT T FNKHFG YGEITDSVIM+DR+TGQPR
Sbjct: 1   MGSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQG--QSKDFKTKKIFVGGIPSTV 120
           GFGFIT+ADPSVVDKVIEDTHVINGKQVEIKRTIPKG G  QSKD KTKKIFVGGIPSTV
Sbjct: 61  GFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTV 120

Query: 121 TEGKVIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNR 180
           TE                                DELK FF+K+G VVEHQ+IRDHETNR
Sbjct: 121 TE--------------------------------DELKDFFAKYGNVVEHQVIRDHETNR 180

Query: 181 SRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVSLYK 215
           SRGFGF++FD EEVVDE+LSKGNMIDM+ TQVSLYK
Sbjct: 181 SRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSLYK 184

[Close]

BLAST of CmoCh01G011070 vs. TAIR 10
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 278.1 bits (710), Expect = 1.3e-74
Identity = 213/488 (43.65%), Postives = 259/488 (53.07%), Query Frame = 0


Query: 10  PHTGDGA-SPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYA 69
           PH+G G  S GKIF+GGLA++TT  +F KHFG YGEITDSVIMKDR TGQPRGFGF+TYA
Sbjct: 32  PHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA 91

Query: 70  DPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEGKVIELYV 129
           D SVVDKVI+D H+I GKQVEIKRTIP+G   S DFKTKKIFVGGIPS+V +        
Sbjct: 92  DSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDD-------- 151

Query: 130 EACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFD 189
                                   DE K FF +FG++ EHQI+RDH T RSRGFGF+ ++
Sbjct: 152 ------------------------DEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYE 211

Query: 190 EEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLITMDNFQPF 249
            E++VD +L+KGN I++SGTQ                                       
Sbjct: 212 SEDMVDHLLAKGNRIELSGTQ--------------------------------------- 271

Query: 250 HFIQSLRLYRYRSSKARAIRIVEIKKAEPKK-SSNPPPAPAYGSNSRARSFNDGFG-GYG 309
                                VEIKKAEPKK +S   P+  +G +SR+ +F  G+G GYG
Sbjct: 272 ---------------------VEIKKAEPKKPNSVTTPSKRFG-DSRS-NFGGGYGDGYG 331

Query: 310 GSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGY 369
           G +G    G G GP+++ GG GG   GGYG G GG+FGG  GG     +G YRGE +LGY
Sbjct: 332 GGHGGGYGGPG-GPYKSGGGYGGGRSGGYG-GYGGEFGGYGGGGYGGGVGPYRGEPALGY 391

Query: 370 SSRFGPYSGG---------------------------------------FGGGYGTSGLG 429
           S R+G   GG                                       +GGGYG+SG+G
Sbjct: 392 SGRYGGGGGGYNRGGYSMGGGGGYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIG 423

Query: 430 GYGRGVDGYGSYG------------GSGYGGGYDSGPGASYGGA--GGLYGRGGY--SGS 440
           GYG G+ G G  G            G G  GGY +G G + GG+  GG  GRGGY   GS
Sbjct: 452 GYGGGMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYGGGGGRGGYGGGGS 423

[Close]

BLAST of CmoCh01G011070 vs. TAIR 10
Match: AT1G17640.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.3 bits (386), Expect = 4.7e-37
Identity = 139/435 (31.95%), Postives = 194/435 (44.60%), Query Frame = 0


Query: 16  ASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDK 75
           +SPGK+F+GG++ +TT   F  +FG +GE+ DSVIM DR TG PRGFGF+T+AD +V +K
Sbjct: 63  SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122

Query: 76  VIEDTHVINGKQVEIKRTIPKGQGQS---KDFKTKKIFVGGIPSTVTEGKVIELYVEACS 135
           V+E+ HVI+ ++V++KRT+P+G   +      KT+KIFVGG+P  + E            
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEE------------ 182

Query: 136 LLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEV 195
                               DELK++F  +G ++EHQI+ DH T RSRGFGF+ F  E+ 
Sbjct: 183 --------------------DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDS 242

Query: 196 VDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLITMDNFQPFHFIQ 255
           VD + S G + ++   Q                                           
Sbjct: 243 VDRLFSDGKVHELGDKQ------------------------------------------- 302

Query: 256 SLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDF 315
                            VEIK+AEPK++                  ++ F  YG S    
Sbjct: 303 -----------------VEIKRAEPKRTGR----------------DNSFRSYGAS---- 362

Query: 316 DAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGP 375
                 G +       G+    Y   SG    GGYGG+G+     Y G S +  +  +G 
Sbjct: 363 ------GKYDQEDSYSGKANEDYSMYSG---YGGYGGYGA-----YAGNSMVNPAGFYG- 369

Query: 376 YSGGFGGGYGTS--------GLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYG 435
           Y GG+G GYG          G GGY     GYG    + YGGG   G G +   +G   G
Sbjct: 423 YGGGYGYGYGYGGQMFNMGYGAGGYSHMGSGYGVAAAAAYGGGKSHGNGNNGSSSGKGNG 369

Query: 436 RGGYSGSSRYHPYAR 440
             G SG  RYHPY +
Sbjct: 483 TNG-SGPDRYHPYQK 369

[Close]

BLAST of CmoCh01G011070 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.9 bits (307), Expect = 6.8e-28
Identity = 135/443 (30.47%), Postives = 201/443 (45.37%), Query Frame = 0


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GG++ +T   +  +HF +YGE++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 79  DTHVINGKQVEIKRTI----------------PKGQGQSKDFKTKKIFVGGIPSTVTEGK 138
           + H I+ ++V++KR +                 +  G     KTKKIFVGG+P T+T+  
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD-- 125

Query: 139 VIELYVEACSLLAEPFLCCVLICLLRILLVDELKHFFSKFGKVVEHQIIRDHETNRSRGF 198
                                         +E + +F  +G V +  I+ D  TNR RGF
Sbjct: 126 ------------------------------EEFRQYFEVYGPVTDVAIMYDQATNRPRGF 185

Query: 199 GFIVFDEEEVVDEILSKGNMIDMSGTQVSLYKRTASEQSVNQIVFPMGFAPSYFPVLITM 258
           GF+ FD E+ VD +L K    D+SG QV + +    + +       MG   S        
Sbjct: 186 GFVSFDSEDAVDSVLHK-TFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGS-------- 245

Query: 259 DNFQPFHFIQSLRLYRYRSSKARAIRIVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGF 318
             +Q +   +S   Y  R    R ++   +    P   S+   A  YG+ S    +   +
Sbjct: 246 GGYQGYGGNES--SYDGRMDSNRFLQHQSVGNGLPSYGSSGYGA-GYGNGSNGAGYG-AY 305

Query: 319 GGYGGSYGDFDAGFGPGPFRTAG-GLGGRIGGGYGYGSG--------GDFGGGYGGFGSS 378
           GGY GS G + AG       TAG G     G GYG  +G             GYG  G  
Sbjct: 306 GGYTGSAGGYGAG------ATAGYGATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYG 365

Query: 379 SLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPG 437
           S   + G    G +      SG    GY   G GGY     GYG+    G  GG  SG G
Sbjct: 366 SGAAHSGYGVPGAAPPTQSPSGYSNQGY---GYGGYSGSDSGYGNQAAYGVVGGRPSGGG 394

The following BLAST results are available for this feature:

BLAST of CmoCh01G011070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	9.6e-27	30.47	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
P21522	2.5e-19	31.67	Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americ...	[more]
P09651	1.3e-18	30.09	Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE...	[more]
Q8BG05	3.7e-18	30.54	Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 P...	[more]
Q6URK4	3.7e-18	30.54	Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrn...	[more]

BLAST of CmoCh01G011070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IWT7	4.2e-174	79.04	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FLG0	4.2e-174	79.04	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5A7U1Z1	4.9e-167	75.85	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3CI79	4.9e-167	75.85	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350126...	[more]
A0A0A0K3W8	1.1e-166	75.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278740 PE=4 SV=1	[more]

BLAST of CmoCh01G011070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037314.1	5.9e-175	79.27	Heterogeneous nuclear ribonucleoprotein 1 [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022941092.1	8.6e-174	79.04	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata] >XP_02298153...	[more]
XP_023525200.1	4.3e-173	78.82	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008463022.1	1.0e-166	75.85	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo] >KAA0048257....	[more]
XP_004149406.1	2.3e-166	75.63	heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN44390.1 hypothet...	[more]

BLAST of CmoCh01G011070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13224.2	3.0e-116	58.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.1	3.1e-81	71.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G40490.1	1.3e-74	43.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17640.1	4.7e-37	31.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	6.8e-28	30.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 140..213 e-value: 4.1E-8 score: 43.0 coord: 20..91 e-value: 1.1E-19 score: 81.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 21..88 e-value: 5.3E-14 score: 51.8 coord: 153..206 e-value: 3.9E-11 score: 42.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 107..219 score: 13.61777
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 19..95 score: 15.32331
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 103..214 e-value: 1.8E-18 score: 68.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 19..99 e-value: 5.0E-23 score: 83.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..123 coord: 150..217 coord: 270..439
None	No IPR available	PANTHER	PTHR48033:SF6	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 150..217
None	No IPR available	PANTHER	PTHR48033:SF6	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..123 coord: 270..439
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 153..213
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G011070.1	CmoCh01G011070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding