CmoCh01G008810 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G008810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 4808144 .. 4808475 (-)
RNA-Seq ExpressionCmoCh01G008810
SyntenyCmoCh01G008810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAAGTTGATCGAGTTTTGCTCTCTTATCATTTCTTCTCCTCAGCCTTGTATCCATTTCTCACTCTATGGGTAAGCCTTTGATACTCCTTACTAAGAAATATCTGGTTTCAATCGCTTAAGTTTTTGGAAATCATTGCATTGCAGATCAATCAAAGACTTGCCCAGAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCAATGGTGCCAACTCTCGCATTTGTCGTTGCAATACTCTGTCCCTAA

mRNA sequence

ATGGAGAAGAAGTTGATCGAGTTTTGCTCTCTTATCATTTCTTCTCCTCAGCCTTGTATCCATTTCTCACTCTATGGACTTGCCCAGAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCAATGGTGCCAACTCTCGCATTTGTCGTTGCAATACTCTGTCCCTAA

Coding sequence (CDS)

ATGGAGAAGAAGTTGATCGAGTTTTGCTCTCTTATCATTTCTTCTCCTCAGCCTTGTATCCATTTCTCACTCTATGGACTTGCCCAGAAGAATTTCATTCGAAGGGAACATGTGGACATTGGACTGGAATCTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGAAATATCCCACCCAAGGGTTGCGAATGCATTCCCAATGGTGCCAACTCTCGCATTTGTCGTTGCAATACTCTGTCCCTAA

Protein sequence

MEKKLIEFCSLIISSPQPCIHFSLYGLAQKNFIRREHVDIGLESQNATVNQWQGMEISHPRVANAFPMVPTLAFVVAILCP
Homology
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BLAST of CmoCh01G008810 vs. NCBI nr
Match: KAG6607503.1 (hypothetical protein SDJN03_00845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 3.3e-12
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 27 LAQKNFIRREHVDIGLESQNATVNQWQGMEISHPRVANAFPMVPTLAFVVAIL 80
          LA KNF+++EHV+ GLESQNATVNQWQ MEISH R ANAF MV TLAF VA+L
Sbjct: 20 LAHKNFVQQEHVEAGLESQNATVNQWQEMEISHQRAANAFLMVWTLAFAVAML 72

The following BLAST results are available for this feature:
BLAST of CmoCh01G008810 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G008810 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G008810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607503.13.3e-1275.47hypothetical protein SDJN03_00845, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh01G008810 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G008810.1CmoCh01G008810.1mRNA