CmoCh01G007870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G007870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionMYB transcription factor
LocationCmo_Chr01: 4136122 .. 4136971 (-)
RNA-Seq ExpressionCmoCh01G007870
SyntenyCmoCh01G007870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAGCGCAGGAAGCAACCAAGCCAAGCCAAGCTGTGCGTTTGGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAGGAAGGAAGGCAATCCCTTCTGGATCTAGACGAGCATGACCGTGACACACAGTAGAGGTCACTGGCGCCCTGCGGAAGACCACAAGCTGCAGGAGCTGGTGGAGCGACATGGCCCTCATAACTGGAACGCCATTGCTCAAAGCCTTCAAGGAAGATCCGGTGGGTAAATTATATGTTCTTCATTAAATCTACAATACCCATCTCATTGTTTTTATTCCCTTCAGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCGGTCAAGAATCATTGGCACGTCATCCGGGCTCGAACGTCCAGACGGGCCTCCAAACACCGCGTCAAGACTAGGTTAGGAATAATCGATATTCACAATGGTATGATATTGTCTATTTTAATAATTTTTTTAGAAAAGCCTCGTCCAGTGGAGACAATATCTCTCATAATGGCACGTTTGTGTTACAGATAGCCATCAAGGTGTGGATTTTTACAACTTTCTCCACTTGAATACAGAATCTATTAATGGAAGTGAAGTGACAGACCACTCGAGAAAAGATCGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCTACACCAGCCATGACGTTGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAG

mRNA sequence

ATTGAGCGCAGGAAGCAACCAAGCCAAGCCAAGCTGTGCGTTTGGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAGGAAGGAAGGCAATCCCTTCTGGATCTAGACGAGCATGACCGTGACACACAGTAGAGGTCACTGGCGCCCTGCGGAAGACCACAAGCTGCAGGAGCTGGTGGAGCGACATGGCCCTCATAACTGGAACGCCATTGCTCAAAGCCTTCAAGGAAGATCCGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCGACCACTCGAGAAAAGATCGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCTACACCAGCCATGACGTTGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAG

Coding sequence (CDS)

ATGACCGTGACACACAGTAGAGGTCACTGGCGCCCTGCGGAAGACCACAAGCTGCAGGAGCTGGTGGAGCGACATGGCCCTCATAACTGGAACGCCATTGCTCAAAGCCTTCAAGGAAGATCCGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCGACCACTCGAGAAAAGATCGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCTACACCAGCCATGACGTTGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAG

Protein sequence

MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNATTREKIEKMMKKLIKKLPQPPTPAMTLLFEEPTRMRRR
Homology
[Close]
BLAST of CmoCh01G007870 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.3e-42
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 0 

Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVE+ GPHNWNAIAQ L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 4  SRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEE 63

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLA+H IHGNRW++I+R FPGRTDNA
Sbjct: 64 EEERLLASHRIHGNRWSVIARFFPGRTDNA 93

[Close]
BLAST of CmoCh01G007870 vs. ExPASy Swiss-Prot
Match: Q9FX36 (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.3e-42
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 0 

Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL++LVE++GPHNWNAIA  L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 5  SRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTEE 64

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLAAH IHGNRW+II+RLFPGRTDNA
Sbjct: 65 EEERLLAAHRIHGNRWSIIARLFPGRTDNA 94

[Close]
BLAST of CmoCh01G007870 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.7e-37
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0 

Query: 6   SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+E
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 66  EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           E++RL+ AH ++GN+WA+I+RLFPGRTDN+
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNS 195

[Close]
BLAST of CmoCh01G007870 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 8.7e-37
Identity = 66/90 (73.33%), Postives = 80/90 (88.89%), Query Frame = 0 

Query: 6   SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           +RGHWRPAED KL++LV ++GP NWN IA+ L GRSGKSCRLRWFNQLDPRINR  FT+E
Sbjct: 48  ARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTEE 107

Query: 66  EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           E++RL+AAH  +GN+WA+I+RLFPGRTDNA
Sbjct: 108 EEERLMAAHRAYGNKWALIARLFPGRTDNA 137

[Close]
BLAST of CmoCh01G007870 vs. ExPASy Swiss-Prot
Match: Q9LQX5 (Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-36
Identity = 66/89 (74.16%), Postives = 79/89 (88.76%), Query Frame = 0 

Query: 7   RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           RGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 67  DQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           ++RL+ AH ++GN+WA+I+RLFPGRTDN+
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNS 186

[Close]
BLAST of CmoCh01G007870 vs. ExPASy TrEMBL
Match: A0A6J1GCA0 (transcription factor MYB52-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452656 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
          MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60

Query: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Sbjct: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 95

[Close]
BLAST of CmoCh01G007870 vs. ExPASy TrEMBL
Match: A0A6J1GC83 (transcription factor MYB52-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452656 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
          MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60

Query: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Sbjct: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 95

[Close]
BLAST of CmoCh01G007870 vs. ExPASy TrEMBL
Match: A0A6J1KBV1 (transcription factor MYB52-like OS=Cucurbita maxima OX=3661 GN=LOC111492900 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.5e-44
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1   MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
           M VTHSRGHW  A++HKLQ LVERH PHNWN IAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 10  MIVTHSRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRD 69

Query: 61  PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           PFTQEEDQRLLAAHTIHGNRWAIISRLFP RT+NA
Sbjct: 70  PFTQEEDQRLLAAHTIHGNRWAIISRLFPSRTNNA 104

[Close]
BLAST of CmoCh01G007870 vs. ExPASy TrEMBL
Match: A0A2P5X083 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G281600v1 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.2e-42
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVERHGPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3  SRGHWRPAEDEKLRELVERHGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLL+AH IHGNRWA+I+RLFPGRTDNA
Sbjct: 63 EEERLLSAHRIHGNRWAVIARLFPGRTDNA 92

[Close]
BLAST of CmoCh01G007870 vs. ExPASy TrEMBL
Match: A0A0B0NW29 (Transcription factor MYB44-like protein OS=Gossypium arboreum OX=29729 GN=F383_02330 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.2e-42
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVERHGPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3  SRGHWRPAEDEKLRELVERHGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLL+AH IHGNRWA+I+RLFPGRTDNA
Sbjct: 63 EEERLLSAHRIHGNRWAVIARLFPGRTDNA 92

[Close]
BLAST of CmoCh01G007870 vs. NCBI nr
Match: XP_022949245.1 (transcription factor MYB52-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-50
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
          MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60

Query: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Sbjct: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 95

[Close]
BLAST of CmoCh01G007870 vs. NCBI nr
Match: XP_022949244.1 (transcription factor MYB52-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-50
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
          MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60

Query: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Sbjct: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 95

[Close]
BLAST of CmoCh01G007870 vs. NCBI nr
Match: KAG6607398.1 (Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.5 bits (519), Expect = 5.6e-49
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
          MTVTHSRGHWRP EDHKLQELVERHGPHNWNAIAQSLQ RSGKSCRLRWFNQLDPRINRD
Sbjct: 1  MTVTHSRGHWRPTEDHKLQELVERHGPHNWNAIAQSLQRRSGKSCRLRWFNQLDPRINRD 60

Query: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Sbjct: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 95

[Close]
BLAST of CmoCh01G007870 vs. NCBI nr
Match: KAG7037067.1 (Transcription factor MYB52 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-48
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
          MTVTHSRGHWRP EDHKLQELVERHGPHNWN IAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 1  MTVTHSRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRD 60

Query: 61 PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          PFTQEEDQRLLAAHTI GNRWAIISRLFPGRTDNA
Sbjct: 61 PFTQEEDQRLLAAHTIPGNRWAIISRLFPGRTDNA 95

[Close]
BLAST of CmoCh01G007870 vs. NCBI nr
Match: KAG6607401.1 (Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRS-GKSCRLRWFNQLDPRINR 60
          MTVTHSRGHWRP EDHKLQELVERHGPHNWNAIAQSLQ RS GKSCRLRWFNQLDPRINR
Sbjct: 1  MTVTHSRGHWRPTEDHKLQELVERHGPHNWNAIAQSLQRRSGGKSCRLRWFNQLDPRINR 60

Query: 61 DPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          DPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Sbjct: 61 DPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96

[Close]
BLAST of CmoCh01G007870 vs. TAIR 10
Match: AT1G73410.1 (myb domain protein 54 )

HSP 1 Score: 171.8 bits (434), Expect = 3.7e-43
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 0 

Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL++LVE++GPHNWNAIA  L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 5  SRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTEE 64

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLAAH IHGNRW+II+RLFPGRTDNA
Sbjct: 65 EEERLLAAHRIHGNRWSIIARLFPGRTDNA 94

[Close]
BLAST of CmoCh01G007870 vs. TAIR 10
Match: AT1G17950.1 (myb domain protein 52 )

HSP 1 Score: 171.8 bits (434), Expect = 3.7e-43
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 0 

Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVE+ GPHNWNAIAQ L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 4  SRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEE 63

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLA+H IHGNRW++I+R FPGRTDNA
Sbjct: 64 EEERLLASHRIHGNRWSVIARFFPGRTDNA 93

[Close]
BLAST of CmoCh01G007870 vs. TAIR 10
Match: AT1G69560.1 (myb domain protein 105 )

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-38
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0 

Query: 6   SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+E
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 66  EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           E++RL+ AH ++GN+WA+I+RLFPGRTDN+
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNS 195

[Close]
BLAST of CmoCh01G007870 vs. TAIR 10
Match: AT1G26780.1 (myb domain protein 117 )

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-37
Identity = 66/89 (74.16%), Postives = 79/89 (88.76%), Query Frame = 0 

Query: 7   RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           RGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 67  DQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           ++RL+ AH ++GN+WA+I+RLFPGRTDN+
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNS 186

[Close]
BLAST of CmoCh01G007870 vs. TAIR 10
Match: AT1G26780.2 (myb domain protein 117 )

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-37
Identity = 66/89 (74.16%), Postives = 79/89 (88.76%), Query Frame = 0 

Query: 7   RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           RGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 67  DQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           ++RL+ AH ++GN+WA+I+RLFPGRTDN+
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNS 186

The following BLAST results are available for this feature:
BLAST of CmoCh01G007870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6R0C45.3e-4282.22Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1[more]
Q9FX365.3e-4283.33Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1[more]
Q9SEZ46.7e-3774.44Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1[more]
Q5NBM88.7e-3773.33Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV... [more]
Q9LQX51.9e-3674.16Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1[more]
BLAST of CmoCh01G007870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GCA01.1e-50100.00transcription factor MYB52-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1GC831.1e-50100.00transcription factor MYB52-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1KBV14.5e-4489.47transcription factor MYB52-like OS=Cucurbita maxima OX=3661 GN=LOC111492900 PE=4... [more]
A0A2P5X0833.2e-4287.78Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G281600v1 PE... [more]
A0A0B0NW293.2e-4287.78Transcription factor MYB44-like protein OS=Gossypium arboreum OX=29729 GN=F383_0... [more]
BLAST of CmoCh01G007870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949245.12.3e-50100.00transcription factor MYB52-like isoform X2 [Cucurbita moschata][more]
XP_022949244.12.3e-50100.00transcription factor MYB52-like isoform X1 [Cucurbita moschata][more]
KAG6607398.15.6e-4997.89Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7037067.12.8e-4896.84Transcription factor MYB52 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6607401.11.4e-4796.88Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh01G007870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G73410.13.7e-4383.33myb domain protein 54 [more]
AT1G17950.13.7e-4382.22myb domain protein 52 [more]
AT1G69560.14.7e-3874.44myb domain protein 105 [more]
AT1G26780.11.4e-3774.16myb domain protein 117 [more]
AT1G26780.21.4e-3774.16myb domain protein 117 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 58..107
e-value: 1.1E-8
score: 44.9
coord: 6..55
e-value: 2.4E-12
score: 57.0
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 2..53
score: 10.917064
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 54..94
score: 7.410119
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 61..95
e-value: 6.74742E-8
score: 44.1034
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 10..51
e-value: 3.95861E-12
score: 54.889
NoneNo IPR availableGENE3D1.10.10.60coord: 61..117
e-value: 4.9E-12
score: 47.6
NoneNo IPR availableGENE3D1.10.10.60coord: 7..58
e-value: 1.5E-23
score: 84.5
NoneNo IPR availablePFAMPF13921Myb_DNA-bind_6coord: 10..70
e-value: 1.8E-17
score: 63.4
NoneNo IPR availablePANTHERPTHR45614:SF176OS08G0435700 PROTEINcoord: 4..95
NoneNo IPR availablePANTHERPTHR45614MYB PROTEIN-RELATEDcoord: 4..95
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 2..57
score: 21.251932
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 58..109
score: 15.956504
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 5..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G007870.1CmoCh01G007870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding