CmoCh01G007470 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G007470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 3882017 .. 3882761 (-)
RNA-Seq ExpressionCmoCh01G007470
SyntenyCmoCh01G007470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTAGTAGAAAGGCCTTGCTTTTTGAACGTAGAGATTAGAACGGAGAGATTGGAGTTTGGTGAAGGAAGCAATCCGCTATTGGCATCAGAAAAGCTTGCGGTTTTCGAGTCTCTTCGCCCGAGTTTAACATTCCAAAACGGCCCTCCAAGCTGTATAATCATAACAATAATTAACACTAACTCAACTCAACTCAACTCGACAAGACCTGAAAGAACATACCAATGCAACGGAATCCCGAGCAGCAATAGTCAAGATATCAGCACACGAAACCACGCCAGGACACGACTTCTCAACTCTAGACTTGATTTTATCAATCACATTGAAACTTCTAAGCGAGTTTTTGTTGGGATTTGCATTTTGCTCTCCTACGAATGACCCGTGATCGTCTAGCAACACCGATGCATCGCATCCCTGATAACCATTACTCAACTCAAAAGCTTAAGCGGGCGATCGGGTTATGAACAAGAGTTTGATAATATATATGTGGAGAGAGTGAGAACGAACTTACATTGACGAAACAGTCGTGGAAGTGGAGACGGAGGAGAGAAGCTCCGACGCGTCGTTCCTTTGAGATTTCATGTTTAAGGATGGATTTGACGATGGGGAAGAGGTTAGGACAGCTGGTGTGGTAGAACTTTTTGGAGAGATGAGAGGAGGAGCTGCCGGCGGCTGCCGTGCCGGAAACCGCCGTGAAAAGCAAGGCCGCGAATATTATAATATTCATCTTGTCAATAATTGA

mRNA sequence

ATGTCGGTAGTAGAAAGGCCTTGCTTTTTGAACGTAGAGATTAGAACGGAGAGATTGGAGTTTGGTGAAGGAAGCAATCCGCTATTGGCATCAGAAAAGCTTGCGGTTTTCGAGTCTCTTCGCCCGAGTTTAACATTCCAAAACGGCCCTCCAAGCTATTTCATGTTTAAGGATGGATTTGACGATGGGGAAGAGGTTAGGACAGCTGGTGTGGTAGAACTTTTTGGAGAGATGAGAGGAGGAGCTGCCGGCGGCTGCCGTGCCGGAAACCGCCGTGAAAAGCAAGGCCGCGAATATTATAATATTCATCTTGTCAATAATTGA

Coding sequence (CDS)

ATGTCGGTAGTAGAAAGGCCTTGCTTTTTGAACGTAGAGATTAGAACGGAGAGATTGGAGTTTGGTGAAGGAAGCAATCCGCTATTGGCATCAGAAAAGCTTGCGGTTTTCGAGTCTCTTCGCCCGAGTTTAACATTCCAAAACGGCCCTCCAAGCTATTTCATGTTTAAGGATGGATTTGACGATGGGGAAGAGGTTAGGACAGCTGGTGTGGTAGAACTTTTTGGAGAGATGAGAGGAGGAGCTGCCGGCGGCTGCCGTGCCGGAAACCGCCGTGAAAAGCAAGGCCGCGAATATTATAATATTCATCTTGTCAATAATTGA

Protein sequence

MSVVERPCFLNVEIRTERLEFGEGSNPLLASEKLAVFESLRPSLTFQNGPPSYFMFKDGFDDGEEVRTAGVVELFGEMRGGAAGGCRAGNRREKQGREYYNIHLVNN
Homology
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BLAST of CmoCh01G007470 vs. ExPASy TrEMBL
Match: A0A371F3D8 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_47685 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.1e-04
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 2  SVVERPCFLNVEIRTERLEFGEGSNPLLASEKLAVFESLRPSLTFQNGPPS 53
          S+VE P  LN+E+   R E G G  PLLA++ LAV  SL PSLTFQ GPPS
Sbjct: 46 SLVESPRALNLEMSWLRFEVG-GGMPLLAADWLAVLASLLPSLTFQVGPPS 95

The following BLAST results are available for this feature:
BLAST of CmoCh01G007470 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G007470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A371F3D88.1e-0458.82Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_47685 P... [more]
BLAST of CmoCh01G007470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh01G007470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G007470.1CmoCh01G007470.1mRNA