CmoCh01G007130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G007130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 3654773 .. 3657368 (-)
RNA-Seq Expression	CmoCh01G007130
Synteny	CmoCh01G007130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACTGCATCGTCTCGAATCGCTGGTTGATTCTCCGGTGTCCAGCCTTCTTCCTTCAGCCGTTCGTTTGCATTTGGAGACGAGCCATTATTCACTGAGAGCAGTCGGACTTTTTTCGCCGCGTCGCCATGAGAGCTAAGGTAATTGATTTTAAGATCTATCAATGGATTCAACTTGTTTTGAGCTTTTACATCTTTTTCGAGATGCTTTATGGGATCTGATGTTTTCTATTTCGTTTTCTGGCAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGCCATTGTCTGAGGGATGGTTTCGACCTAGGGTTTTGGTTACTGTTTAGATTTCTTTACGTTATATTTAGTTTTTTATTTTATTGTTTGACCGTTTTGAACTGTTCTTAATTGCTATGTGATCGATACATTTAGTTGTTTTAATCGAGAACTGGATTTCCAGCTTTATAGTTTCTATCAATCGAGTTTTATAAGCTTTCTTGTGTTCTTCCGATGGTTCTGTCAAAGCATCAGTCGTTATTTTCTGCGACAATTGGTTTATTATTTAGCTTTTGGCTGCTGGATTAGGATTCTTTGATATATATTATCTGTGTCTATTCTCTTTAAACATGAGCCGTTGCCAAACTTCTGAAGGTGTTTCAATTTGGAATTATTGGTGAATGAATTATGTAGCTGATAAAAAAGTTTCCAGGACTTCTAGATTCGATTACATTCCTTATAGATTCATTATTGCATTGCAATGCATTTTGATCAAAACTAACCATTCCGGAAGGTAGACGTGAATAAGTTGCAATAAGCATAGGATTGATTGTGTATAGAACTTCCCATTCAATCATTCATATTACATCCCTTTTCTGAATGTGGTCTGCTGCAATGTTGATTCTTACAAGTGCTGTTAACTATAACTTATCACCAAAGAACCCTATTTTCTTTGATTAAGCTGCAGCCCAACTTGCTTCATTCCTTCAAAAGCCACTATAGCTTCCGAATCAAAACCTCCTGCATACTGAAAAGATACCGAGTGTTATTGTTGAGTATCATAAAATGTGATTAGTTAGTATGTCTTTGTAGCTTACCTGGTGCACCCTGTAAGCAAAGCGAACCCCTTGAAGAAAAAGGTTTTCTGTTTGTGGGGTTTCGTTCAATTGTTTCTCTTTTGTTATCCTCCGCATGCATTCCTTCACTAGCCTCAATGAGCTCAGCTTCATCTGCAACCAATTGTGTTTTACAGTTTTTCATTTTTATGTTCTCTAGTCTAGAAGGTGAAACATTGTTCGTGGTTACCTCTACAATGGTATGATATTCTGCACTTTGAGCAGCTTATGATTTTGCTTTTAGTTTTACCCTAAATGTCTAGTACCAATAGATATAGTGGTTCTTACTGATAAACTCATGATCAACCCCCTTATTAACCGAATGTGGGACTTATTAATCGAACGTGGGACTTCTCTCCCAACAATCCTTTTATAGAAAAAAAAAGCATATCTCAAAGTACACCATAGAACTTCCCTTGAGGCCTATGGAGCTCTCGAGCTACCTCCCCTTAATCAAGGTTTGACTCCTATTGAGCCTTCGAACAAAGTATACTTTTTGTTCTACACTTGGTTACTTTTGATTACACTTTTAAGGCTCACAACTTTTTTGTGTTGGACATTTGAGGATTCTATTGACATGACAAAATGAAGGGCATGCCTCGGATACTTGGTTAGAAACCATGAATCTTCATAATGGTACGATATTGTCTACATTGAGCATAAGTTTTCATGATTTTGCTTTTAGTTTATCTAAAAGGTCTCAAGCTTTCATGATTTTGCTTTTAGTACGAGATAGTGTTTTTTAGTTATAAACCCATGACCAATCTCTTAGAGACTCCTCTCCTAACTGGACGGAAGTGGACGGAAGTGGTGTTCATGGTTTTTCGTTTAGAAGCTAGCTTTGATTAAGAGTTAACCTGGGCTGGCAAGCCAGAGTCCAGCATCCATTGGCAAGGGATTTGAAACTTGTTGTACTTCTTACAGTTGAACTCCCTCGTCCTCTCCACATTGCTCACGCTCTGCTCCAACCTGCACAGTTCCAAGCATTTCTCTAGTTCATCAGTCACTTCCCAACTCTGCTTCACCTTATTAGTAACATGAAATACAACAGATTGTACATGCTCGCCTGTCTTGCAAGGCCTGAGCCCTCTTCAACATTGCATTCGTCTCCTCCTTTGGATTCTCTCTAAACGAACACACTTCACCTTCCAAGCTCTTCAGATCCTTGTAGCTGAATGCCGCCTCCCGCAGTGCGTCTGCCTTCCCCTCCGGCCACCGTGGGAAGTGCTTGAGCACCGCCCTCTCGTCCACGAGCGATGCCAGCTCCCCGTCTAGCCACTTCACGAACCTCTCCACCTCCGCTATGTCTCTTGGCGCTGCCGCTTCCACTTCTCTGATCAGCCGGTTCACAAACTCCCCATGTGTCTCCACCTCCGATTTTATCTGTGCCCATGCTTTCATTCACTTGCCTTTTTCGTCTTTCTCATCCAAAACTTTCCATGTTCTTACAATTCTATCTCTAATTTAA

mRNA sequence

ATTACTGCATCGTCTCGAATCGCTGGTTGATTCTCCGGTGTCCAGCCTTCTTCCTTCAGCCGTTCGTTTGCATTTGGAGACGAGCCATTATTCACTGAGAGCAGTCGGACTTTTTTCGCCGCGTCGCCATGAGAGCTAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGCCATTGTCTGAGGGATGGTTTCGACCTAGGGTTTTGGTTACTGTTTAGATTTCTTTACGTTATATTTAGTTTTTTATTTTATTGTTTGACCGTTTTGAACTGTTCTTAATTGCTATGTGATCGATACATTTAGTTGTTTTAATCGAGAACTGGATTTCCAGCTTTATAGTTTCTATCAATCGAGTTTTATAAGCTTTCTTGTGTTCTTCCGATGGTTCTGTCAAAGCATCAGTCGTTATTTTCTGCGACAATTGGTTTATTATTTAGCTTTTGGCTGCTGGATTAGGATTCTTTGATATATATTATCTGTGTCTATTCTCTTTAAACATGAGCCGTTGCCAAACTTCTGAAGCTTACCTGGTGCACCCTGTAAGCAAAGCGAACCCCTTGAAGAAAAAGCTGAATGCCGCCTCCCGCAGTGCGTCTGCCTTCCCCTCCGGCCACCGTGGGAAGTGCTTGAGCACCGCCCTCTCGTCCACGAGCGATGCCAGCTCCCCGTCTAGCCACTTCACGAACCTCTCCACCTCCGCTATGTCTCTTGGCGCTGCCGCTTCCACTTCTCTGATCAGCCGGTTCACAAACTCCCCATGTGTCTCCACCTCCGATTTTATCTGTGCCCATGCTTTCATTCACTTGCCTTTTTCGTCTTTCTCATCCAAAACTTTCCATGTTCTTACAATTCTATCTCTAATTTAA

Coding sequence (CDS)

ATGAGCCGTTGCCAAACTTCTGAAGCTTACCTGGTGCACCCTGTAAGCAAAGCGAACCCCTTGAAGAAAAAGCTGAATGCCGCCTCCCGCAGTGCGTCTGCCTTCCCCTCCGGCCACCGTGGGAAGTGCTTGAGCACCGCCCTCTCGTCCACGAGCGATGCCAGCTCCCCGTCTAGCCACTTCACGAACCTCTCCACCTCCGCTATGTCTCTTGGCGCTGCCGCTTCCACTTCTCTGATCAGCCGGTTCACAAACTCCCCATGTGTCTCCACCTCCGATTTTATCTGTGCCCATGCTTTCATTCACTTGCCTTTTTCGTCTTTCTCATCCAAAACTTTCCATGTTCTTACAATTCTATCTCTAATTTAA

Protein sequence

MSRCQTSEAYLVHPVSKANPLKKKLNAASRSASAFPSGHRGKCLSTALSSTSDASSPSSHFTNLSTSAMSLGAAASTSLISRFTNSPCVSTSDFICAHAFIHLPFSSFSSKTFHVLTILSLI

Homology

[Close]

BLAST of CmoCh01G007130 vs. ExPASy TrEMBL
Match: A0A7J6F7M0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_009453 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 45/76 (59.21%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 21  LKKKLNAASRSASAFPSGHRGKCLSTALSSTSDASSPSSHFTNLSTSAMSLGAAASTSLI 80
           ++  L AASR  SAF SGH GKCL TALSST + S  SS  T  STS + L AA STSLI
Sbjct: 26  VQDNLQAASRMVSAFRSGHCGKCLRTALSSTKEDSCSSSQVTKASTSEILLWAADSTSLI 85

Query: 81  SRFTNSPCVSTSDFIC 97
           ++  NS C STSDF C
Sbjct: 86  NKLMNSACFSTSDFTC 101

[Close]

BLAST of CmoCh01G007130 vs. NCBI nr
Match: KAF4365730.1 (hypothetical protein G4B88_009453 [Cannabis sativa])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-08
Identity = 45/76 (59.21%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 21  LKKKLNAASRSASAFPSGHRGKCLSTALSSTSDASSPSSHFTNLSTSAMSLGAAASTSLI 80
           ++  L AASR  SAF SGH GKCL TALSST + S  SS  T  STS + L AA STSLI
Sbjct: 26  VQDNLQAASRMVSAFRSGHCGKCLRTALSSTKEDSCSSSQVTKASTSEILLWAADSTSLI 85

Query: 81  SRFTNSPCVSTSDFIC 97
           ++  NS C STSDF C
Sbjct: 86  NKLMNSACFSTSDFTC 101

The following BLAST results are available for this feature:

BLAST of CmoCh01G007130 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G007130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6F7M0	1.2e-08	59.21	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_009453 PE=3 SV=1	[more]

BLAST of CmoCh01G007130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4365730.1	2.6e-08	59.21	hypothetical protein G4B88_009453 [Cannabis sativa]	[more]

BLAST of CmoCh01G007130 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G007130.1	CmoCh01G007130.1	mRNA