CmoCh01G006260 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G006260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	metallothionein-like protein LSC54
Location	Cmo_Chr01: 3229068 .. 3229482 (+)
RNA-Seq Expression	CmoCh01G006260
Synteny	CmoCh01G006260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTGGGTGCAAATGTGGTGACAGTTGCTCCTGTGGAGATAGCTGCAACTGCCAATCTGGGTATCTATCTATATATCTTCTTTTTCTCCACCTTCTACTTACAAGTCGCTTCATTTATTAACCCATTTTTCCAATCTTTGCAGGTCTATCACAGAGGCCTTCATCCTCAACAAGTAATAATGATTTTGATTGATTTATATTTTGTTTAAATTCTAATACCACGACCATCCGGTGTCAAATTTGGTTTCTGAATCGATTAAAAAGATTTCAAACGGGAAGAACGAAAAGTTTACAGAAATCGTTTATGATCTTTTATCTCTAGGTTTGTAATGTTGTATACAAATGAACTATGCAGGGATGGGTGCAGCTGTGGGAGTAGCTGTTCATGTGACCCATGCAACTGCAAGTGA

mRNA sequence

ATGGCTTCTGGGTGCAAATGTGGTGACAGTTGCTCCTGTGGAGATAGCTGCAACTGCCAATCTGGGTCTATCACAGAGGCCTTCATCCTCAACAAGTTTGTAATGTTGTATACAAATGAACTATGCAGGGATGGGTGCAGCTGTGGGAGTAGCTGTTCATGTGACCCATGCAACTGCAAGTGA

Coding sequence (CDS)

ATGGCTTCTGGGTGCAAATGTGGTGACAGTTGCTCCTGTGGAGATAGCTGCAACTGCCAATCTGGGTCTATCACAGAGGCCTTCATCCTCAACAAGTTTGTAATGTTGTATACAAATGAACTATGCAGGGATGGGTGCAGCTGTGGGAGTAGCTGTTCATGTGACCCATGCAACTGCAAGTGA

Protein sequence

MASGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSCDPCNCK

Homology

[Close]

BLAST of CmoCh01G006260 vs. ExPASy Swiss-Prot
Match: Q39458 (Metallothionein-like protein 1 OS=Cicer arietinum OX=3827 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-08
Identity = 32/74 (43.24%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GC 61
          SGC CG SC+CGD C C         ++G  TE  +L        F     +    D GC
Sbjct: 2  SGCNCGSSCNCGDQCKCNKRSGLSYVEAGETTETVVLGVGPTKIHFEGAEMSVAAEDGGC 61

[Close]

BLAST of CmoCh01G006260 vs. ExPASy Swiss-Prot
Match: P43399 (Metallothionein-like protein 1 OS=Trifolium repens OX=3899 GN=MT1B PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-08
Identity = 34/74 (45.95%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNCQSGS---------ITEAFILN------KFVMLYTNELCRD-GC 61
          SGC CG SC+CGDSC C   S          TE  IL       +F          D GC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLNYVEAETTETVILGVGPAKIQFEDAEMGVAAEDSGC 61

[Close]

BLAST of CmoCh01G006260 vs. ExPASy Swiss-Prot
Match: P20830 (Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-07
Identity = 32/74 (43.24%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNCQSGS---------ITEAFILN------KFVMLYTNELCRD-GC 61
          SGC CG SC+CGDSC C   S          TE  IL       +F     +    D GC
Sbjct: 2  SGCGCGSSCNCGDSCKCNKRSSGLSYSEMETTETVILGVGPAKIQFEGAEMSAASEDGGC 61

[Close]

BLAST of CmoCh01G006260 vs. ExPASy Swiss-Prot
Match: Q41670 (Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-06
Identity = 27/74 (36.49%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNC--QSGSITEAFILNKFVML--------------YTNELCRDGC 61
          SGC CG SC+CGDSC C  +S  ++ + +  K  ++               +      GC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLSYSEVETKETVILGVGPAKIQFEGAEMSFASKEGGC 61

[Close]

BLAST of CmoCh01G006260 vs. ExPASy Swiss-Prot
Match: P20238 (Metallothionein-like protein 1 OS=Erythranthe guttata OX=4155 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.0e-06
Identity = 27/72 (37.50%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 1  MASGCKCGDSCSCGDSCNC-----QSGSITEAFILNKFVMLYTNELCR--------DGCS 60
          M+SGC CG  C CGD+C+C        + T   I     +   +E           +GC 
Sbjct: 1  MSSGCSCGSGCKCGDNCSCSMYPDMETNTTVTMIEGVAPLKMYSEGSEKSFGAEGGNGCK 60

[Close]

BLAST of CmoCh01G006260 vs. ExPASy TrEMBL
Match: A0A6J1KD42 (metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.5e-18
Identity = 48/60 (80.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1  MASGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSCDPCNCK 60
          M SGCKCGDSCSCGDSCNCQSGSITEAFILNK           DGCSCGSSCSCDPCNCK
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNK-----------DGCSCGSSCSCDPCNCK 78

[Close]

BLAST of CmoCh01G006260 vs. ExPASy TrEMBL
Match: A0A3Q7K738 (metallothionein-like protein 1 OS=Cicer arietinum OX=3827 GN=MT-1 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 33/74 (44.59%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GC 61
          SGC CG SC+CGDSC C         ++G  TE  +L        F     +    D GC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSGLSYVEAGETTETVVLGVGPTKIHFEGAEMSVAAEDGGC 61

[Close]

BLAST of CmoCh01G006260 vs. ExPASy TrEMBL
Match: A0A1S2YLR2 (metallothionein-like protein 1 OS=Cicer arietinum OX=3827 GN=LOC101513828 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 33/75 (44.00%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNC----------QSGSITEAFILN------KFVMLYTNELCRD-G 61
          SGC CG SC+CGDSC C          + G  TE  +L       +F     +    D G
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLNYAEGGETTETVVLGVGPTKIQFEGAEMSVAAEDGG 61

[Close]

BLAST of CmoCh01G006260 vs. ExPASy TrEMBL
Match: A0A0K1JSH1 (Metallothionein-like protein OS=Oxytropis ochrocephala OX=483875 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-06
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 1  MASGCKCGDSCSCGDSCNCQSGSITEAFILN---KFVMLYTNELC----RDGCSCGSSCS 60
          M+S C CG SC+CG +C C+ G+ TE  I+      V     E+       GCSCGSSC+
Sbjct: 1  MSSNCGCGSSCNCGSNCTCE-GNTTETMIMGVGPAKVQFEDVEMGVAAETGGCSCGSSCT 60

[Close]

BLAST of CmoCh01G006260 vs. ExPASy TrEMBL
Match: I3T2G0 (Metallothionein OS=Medicago truncatula OX=3880 GN=25491579 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 32/74 (43.24%), Postives = 36/74 (48.65%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNCQS---------GSITEAFILNKFVMLYTNELC-------RDGC 61
          SGCKCG SC+CGD+C C S         G  TE  I+         E           GC
Sbjct: 2  SGCKCGSSCNCGDNCKCNSRSSGLGYLEGETTETVIMGVAPAKIHFEGAEMGVAAEEGGC 61

[Close]

BLAST of CmoCh01G006260 vs. NCBI nr
Match: XP_022997994.1 (metallothionein-like protein LSC54 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 48/60 (80.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1  MASGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSCDPCNCK 60
          M SGCKCGDSCSCGDSCNCQSGSITEAFILNK           DGCSCGSSCSCDPCNCK
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNK-----------DGCSCGSSCSCDPCNCK 78

[Close]

BLAST of CmoCh01G006260 vs. NCBI nr
Match: XP_004506573.1 (metallothionein-like protein 1 [Cicer arietinum])

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-06
Identity = 33/75 (44.00%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNC----------QSGSITEAFILN------KFVMLYTNELCRD-G 61
          SGC CG SC+CGDSC C          + G  TE  +L       +F     +    D G
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLNYAEGGETTETVVLGVGPTKIQFEGAEMSVAAEDGG 61

[Close]

BLAST of CmoCh01G006260 vs. NCBI nr
Match: NP_001351703.1 (metallothionein-like protein 1 [Cicer arietinum])

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-06
Identity = 33/74 (44.59%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GC 61
          SGC CG SC+CGDSC C         ++G  TE  +L        F     +    D GC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSGLSYVEAGETTETVVLGVGPTKIHFEGAEMSVAAEDGGC 61

[Close]

BLAST of CmoCh01G006260 vs. NCBI nr
Match: AKU19651.1 (metallothionein-like protein [Oxytropis ochrocephala])

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 1  MASGCKCGDSCSCGDSCNCQSGSITEAFILN---KFVMLYTNELC----RDGCSCGSSCS 60
          M+S C CG SC+CG +C C+ G+ TE  I+      V     E+       GCSCGSSC+
Sbjct: 1  MSSNCGCGSSCNCGSNCTCE-GNTTETMIMGVGPAKVQFEDVEMGVAAETGGCSCGSSCT 60

[Close]

BLAST of CmoCh01G006260 vs. NCBI nr
Match: Q39458.1 (RecName: Full=Metallothionein-like protein 1; Short=MT-1 [Cicer arietinum] >CAA65008.1 metallothionein [Cicer arietinum])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 32/74 (43.24%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GC 61
          SGC CG SC+CGD C C         ++G  TE  +L        F     +    D GC
Sbjct: 2  SGCNCGSSCNCGDQCKCNKRSGLSYVEAGETTETVVLGVGPTKIHFEGAEMSVAAEDGGC 61

[Close]

BLAST of CmoCh01G006260 vs. TAIR 10
Match: AT3G09390.1 (metallothionein 2A )

HSP 1 Score: 45.1 bits (105), Expect = 2.4e-05
Identity = 25/78 (32.05%), Postives = 31/78 (39.74%), Query Frame = 0


Query: 7  CGDSCSCGDSCNCQSG----------------SITEAFILNKFVML--------YTNELC 61
          CG +C CG  C C +G                + TE F+L     +         +N   
Sbjct: 4  CGGNCGCGSGCKCGNGCGGCKMYPDLGFSGETTTTETFVLGVAPAMKNQYEASGESNNAE 63

[Close]

BLAST of CmoCh01G006260 vs. TAIR 10
Match: AT1G07610.1 (metallothionein 1C )

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-05
Identity = 26/58 (44.83%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSC-DPCNC 60
          S C CG SC CGDSC+C+                  N+ C D CSCGS+CSC   CNC
Sbjct: 4  SNCGCGSSCKCGDSCSCEKN---------------YNKEC-DNCSCGSNCSCGSSCNC 45

[Close]

BLAST of CmoCh01G006260 vs. TAIR 10
Match: AT1G07600.1 (metallothionein 1A )

HSP 1 Score: 44.3 bits (103), Expect = 4.1e-05
Identity = 26/58 (44.83%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 3  SGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSC-DPCNC 60
          S C CG SC CGDSC+C+                  N+ C D CSCGS+CSC   CNC
Sbjct: 4  SNCGCGSSCKCGDSCSCEKN---------------YNKEC-DNCSCGSNCSCGSNCNC 45

[Close]

BLAST of CmoCh01G006260 vs. TAIR 10
Match: AT5G02380.1 (metallothionein 2B )

HSP 1 Score: 41.6 bits (96), Expect = 2.6e-04
Identity = 23/74 (31.08%), Postives = 30/74 (40.54%), Query Frame = 0


Query: 7  CGDSCSCGDSCNCQSG------------SITEAFILNKFVMLYTNELC--------RDGC 61
          CG SC CG +C C +G            + TE  +L     + +             D C
Sbjct: 4  CGGSCGCGSACKCGNGCGGCKRYPDLENTATETLVLGVAPAMNSQYEASGETFVAENDAC 63

The following BLAST results are available for this feature:

BLAST of CmoCh01G006260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39458	2.9e-08	43.24	Metallothionein-like protein 1 OS=Cicer arietinum OX=3827 PE=3 SV=1	[more]
P43399	3.8e-08	45.95	Metallothionein-like protein 1 OS=Trifolium repens OX=3899 GN=MT1B PE=3 SV=1	[more]
P20830	3.2e-07	43.24	Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1	[more]
Q41670	2.7e-06	36.49	Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1	[more]
P20238	8.0e-06	37.50	Metallothionein-like protein 1 OS=Erythranthe guttata OX=4155 PE=3 SV=1	[more]

BLAST of CmoCh01G006260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KD42	5.5e-18	80.00	metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 P...	[more]
A0A3Q7K738	3.7e-06	44.59	metallothionein-like protein 1 OS=Cicer arietinum OX=3827 GN=MT-1 PE=3 SV=1	[more]
A0A1S2YLR2	3.7e-06	44.00	metallothionein-like protein 1 OS=Cicer arietinum OX=3827 GN=LOC101513828 PE=3 S...	[more]
A0A0K1JSH1	6.3e-06	47.76	Metallothionein-like protein OS=Oxytropis ochrocephala OX=483875 PE=2 SV=1	[more]
I3T2G0	1.8e-05	43.24	Metallothionein OS=Medicago truncatula OX=3880 GN=25491579 PE=2 SV=1	[more]

BLAST of CmoCh01G006260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997994.1	1.1e-17	80.00	metallothionein-like protein LSC54 [Cucurbita maxima]	[more]
XP_004506573.1	7.7e-06	44.00	metallothionein-like protein 1 [Cicer arietinum]	[more]
NP_001351703.1	7.7e-06	44.59	metallothionein-like protein 1 [Cicer arietinum]	[more]
AKU19651.1	1.3e-05	47.76	metallothionein-like protein [Oxytropis ochrocephala]	[more]
Q39458.1	2.2e-05	43.24	RecName: Full=Metallothionein-like protein 1; Short=MT-1 [Cicer arietinum] >CAA6...	[more]

BLAST of CmoCh01G006260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09390.1	2.4e-05	32.05	metallothionein 2A	[more]
AT1G07610.1	3.1e-05	44.83	metallothionein 1C	[more]
AT1G07600.1	4.1e-05	44.83	metallothionein 1A	[more]
AT5G02380.1	2.6e-04	31.08	metallothionein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001008	Metallothionein, mollusc	PRINTS	PR00875	MTMOLLUSC	coord: 45..55 score: 53.15 coord: 17..24 score: 25.96 coord: 5..16 score: 51.28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G006260.1	CmoCh01G006260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding