CmoCh01G006240 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G006240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 3220144 .. 3221588 (-)
RNA-Seq ExpressionCmoCh01G006240
SyntenyCmoCh01G006240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGGGTTTCCTTTTTTTTCTTTTGGGTCTCTTTTTACACGGTGATTCGAATGAATTGGGCTACAAAAAGCAGCAGCCAATTTTCCTTCCTGTAATTCGTTCCGTCGATTTCCATCTCTGTGTGGTGTAAATTAAAAGAAATCATACTGGTTTTGGAGATCTGCGGTGGTTTCAGTTTTGGATTTGCAGGTGTTTATGAGCAGCGAAAATGGTGGAGGGACGGAAGGAAGGAAGGAAGGGGAAGCAATTTGTGGCTCAGAGATGTTGCCTCCTCATGTGTCATCTTCCCCAACAGATCAGGTTTCGTTTGTTTGGTTGCAGCCATTTCTCTGGGCTCTAGCTCTGCACAAGCCAAACTCCGAGGATCAGCTCTAAGGTAATTTCATTTTAATTTAAAAAAAAAAAAAAAAAAAAAAAACATTAGTTTCATCTTTATTGTTAATTTCATGTACAGACATTAATTAATTAGAAACAAAGTTTGATTAGGATTTAAAAAATGATTTGAGATGGTTATTATATAATACATAGAAATTAAACACAAAACTAAAAATAAAATTGTGTGTAACTTTTGTTAGTGGATTATATTAATGTTTCTTAATAATTAAAAAGTAAAAAATTTGATCTTTTTTTGTTCCCACAACTTGTATACCTTTCTTGCTTTGGTCACTAAATTTATGAATATTCGATGCATTTTATTTTAATCTAGATAATCATTATTCTATTATCGATTAAAATTAAATTACAAATTTGAAGTTTCACAAATAATTTTTAATTAAATGTTGGGTAGAAATTTGAAATTATTATTAGATACTAGAATAATTTAATAGTATTAAAAAAAGAAAAAGAAGGATAATGTGGTAGGAAAAGAAAAAGAGTGATATTATGACTATTATTAAATTATAGGAGCTAGGGATTAGGTGGAATGCCAGCTAGAAAGTGGAAGACGAAGGTTGGCCCACAGGTTTTGGAGTTGCTTGAGTGGAGCTCCAGATCTATGCCCCCACACGTGACCCTAAACTAAAGTGGATGACAGGATGGCATTATCTGGACGACTCTGATTGTTTGTCCCCCTACAAAACCGACGGTCACGATCAACCCAACTTCATAGGCCTTCTCCCATTCTCTACCCCCCTTGTGTCTGGGTTCGAATGAATTTAAAAATCTTTTATACTATGGATGAAGATAATCGATTCCATCATACAGAGTAGGGTCGATATTCCCTTTGTCTATGATGTAGCCTGCATCCAAATTCCGTATGATTAACAACTCTACCGTTTATTGTCTTGGTTGATTGTGAAGTAGATTAGTTATTGTCTTGTTCACTCATTCCGCATCTTGATTAGTTATAAAATTATTATTAAGCATTTGTTAATAAACTACTTTGCCCCAATTGCATTTAAAAGTTTAAACGTTTTAAAGGGATGCAACTATTAAGGGTCTA

mRNA sequence

ATGTTGCGGGTTTCCTTTTTTTTCTTTTGGGTCTCTTTTTACACGGTGATTCGAATGAATTGGGCTACAAAAAGCAGCAGCCAATTTTCCTTCCTTTTTGGATTTGCAGGTGTTTATGAGCAGCGAAAATGGTGGAGGGACGGAAGGAAGGAAGGAAGGGGAAGCAATTTGTGGCTCAGAGATGTTGCCTCCTCATGTGTCATCTTCCCCAACAGATCAGGTTTCGTTTGTTTGGTTGCAGCCATTTCTCTGGGCTCTAGCTCTGCACAAGCCAAACTCCGAGGATCAGCTCTAAGGAGCTAGGGATTAGGTGGAATGCCAGCTAGAAAGTGGAAGACGAAGGTTGGCCCACAGGTTTTGGAGTTGCTTGAGTGGAGCTCCAGATCTATGCCCCCACACGTGACCCTAAACTAAAGTGGATGACAGGATGGCATTATCTGGACGACTCTGATTGTTTGTCCCCCTACAAAACCGACGGTCACGATCAACCCAACTTCATAGGCCTTCTCCCATTCTCTACCCCCCTTGTGTCTGGGTTCGAATGAATTTAAAAATCTTTTATACTATGGATGAAGATAATCGATTCCATCATACAGAGTAGGGTCGATATTCCCTTTGTCTATGATGTAGCCTGCATCCAAATTCCGTATGATTAACAACTCTACCGTTTATTGTCTTGGTTGATTGTGAAGTAGATTAGTTATTGTCTTGTTCACTCATTCCGCATCTTGATTAGTTATAAAATTATTATTAAGCATTTGTTAATAAACTACTTTGCCCCAATTGCATTTAAAAGTTTAAACGTTTTAAAGGGATGCAACTATTAAGGGTCTA

Coding sequence (CDS)

ATGTTGCGGGTTTCCTTTTTTTTCTTTTGGGTCTCTTTTTACACGGTGATTCGAATGAATTGGGCTACAAAAAGCAGCAGCCAATTTTCCTTCCTTTTTGGATTTGCAGGTGTTTATGAGCAGCGAAAATGGTGGAGGGACGGAAGGAAGGAAGGAAGGGGAAGCAATTTGTGGCTCAGAGATGTTGCCTCCTCATGTGTCATCTTCCCCAACAGATCAGGTTTCGTTTGTTTGGTTGCAGCCATTTCTCTGGGCTCTAGCTCTGCACAAGCCAAACTCCGAGGATCAGCTCTAAGGAGCTAG

Protein sequence

MLRVSFFFFWVSFYTVIRMNWATKSSSQFSFLFGFAGVYEQRKWWRDGRKEGRGSNLWLRDVASSCVIFPNRSGFVCLVAAISLGSSSAQAKLRGSALRS
Homology
[Close]
BLAST of CmoCh01G006240 vs. NCBI nr
Match: KAG6607240.1 (Fasciclin-like arabinogalactan protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 36  AGVYEQRKWWRDGRKE----GRGSNLWLRDVASSCVIFPNRSGFVCLVAAISLGSSSAQA 95
           AGVYEQRKWW DGRKE    GRGSNLWLRDVASSCVIFPNRSGFVCLVAAISLGSSSAQA
Sbjct: 402 AGVYEQRKWWTDGRKEGRKVGRGSNLWLRDVASSCVIFPNRSGFVCLVAAISLGSSSAQA 461

Query: 96  KLRGSALRS 101
           +LRGSALRS
Sbjct: 462 ELRGSALRS 470

The following BLAST results are available for this feature:
BLAST of CmoCh01G006240 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G006240 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G006240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607240.11.6e-2491.30Fasciclin-like arabinogalactan protein 4, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of CmoCh01G006240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G006240.1CmoCh01G006240.1mRNA