CmoCh01G005930 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G005930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S15a
Location	Cmo_Chr01: 3002898 .. 3004359 (+)
RNA-Seq Expression	CmoCh01G005930
Synteny	CmoCh01G005930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTAGACTCAAACCCTAATGCCCTTTGTTCATAGTTGAAGCTGACGGACGCCTCCTTCTGTGACCCAGGTACTCCTCTCATATCTCTTCAACTCCTCTCAGATCGACCTCTGTTCTACAGTTTTGAGCTTGTGCGTCTCTTTTAGCATTGATTGAACTATTAAATGGTTATTGTAATCACTGGTTCGTCGATGGGGACTCCATTTCGTTGTCGAATGCGGATTTTAAATGCAATTACGTTTGGATTTTTGGTAGTGACTGTAGTATTTTAGCAACGGATTTTCAATGTGTTGGAGTTTTTGCTTTTGGTTTGCTTGTTTTCGTAGACATGTTTTGGATGCGATGATCAAGGATAGATTTTAACGTTTTTGTGGTTTTTTTTTCCTCTCTTTCTCTGCTTCATCTGGAAATCATATGAAGCTTTTAATTTGGAAGGATGGTGAGAATTAGTGTCTTGAACGACGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATGGTTATGCAGAAGCACGGTTTGATTGCTTACTTCACCACCTCCTTGATTTGACTTCACGGCCGCAATTTCTCCCGAGGTCCTGATTTTTATTAATTTTTGTTTTCATAGGATATATTGGGGAATTTGAGTATGTCGACGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGTAGGCTGAACAAGTGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTCAAGGAAATCGAAGGCTGGACTGCTAGGCTGCTCCCTTCCAGACAGGTTTGTTTTCAAAATCTGTTAATTTTCTGAAACGTAATACTTGAGAGTTTTGACTCTCCAAATTTACCTGTAATGGAATTCTCGACTCTTAGAATGTTCTTTTAGAGGGTGAATCAGTCTACTTATGTAATGGATTAGATTCGTATATTTCCAATGGCTGCAAAGTTCATATTGCATTGCTCTAAACTAGCAGTGCTTAGTTCTGCAAATGGTTCTGTATTCTTATTTATAAAATTCATGTCTGCAGTTTGGATTCATTGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAACGTTGGAGGGAAAGTCCTTGGTTTCTTCTATTGAACATGGTTTTGAGCCACACCCATTATGGAATTTTGACATAGCTTTCGCATAGTACTATATTTTCTCGGTAAAGAAAGATCTTATCCTGTAATAACTAGATTTTGTGTTGCCAGTAATTTAATTCCAAGATAATTTGATTGTTTTGGTCAAGACATTTTGGTTTTTTTAAATTATATTGGAAGAGAACCATTGCTTTTTGAATCCCTCAAGTGTCTTTCTATCGGCACCCAACACTTTGTTCTCTGTTACATTTAAGTTCTGAAGTTCTATCAAATTTTGTTTGAGCAGGCCGG

mRNA sequence

TATTTAGACTCAAACCCTAATGCCCTTTGTTCATAGTTGAAGCTGACGGACGCCTCCTTCTGTGACCCAGCTTTTAATTTGGAAGGATGGTGAGAATTAGTGTCTTGAACGACGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATGGTTATGCAGAAGCACGGATATATTGGGGAATTTGAGTATGTCGACGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGTAGGCTGAACAAGTGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTCAAGGAAATCGAAGGCTGGACTGCTAGGCTGCTCCCTTCCAGACAGTTTGGATTCATTGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAACGTTGGAGGGAAAGTCCTTGGTTTCTTCTATTGAACATGGTTTTGAGCCACACCCATTATGGAATTTTGACATAGCTTTCGCATAGTACTATATTTTCTCGGTAAAGAAAGATCTTATCCTGTAATAACTAGATTTTGTGTTGCCAGTAATTTAATTCCAAGATAATTTGATTGTTTTGGTCAAGACATTTTGGTTTTTTTAAATTATATTGGAAGAGAACCATTGCTTTTTGAATCCCTCAAGTGTCTTTCTATCGGCACCCAACACTTTGTTCTCTGTTACATTTAAGTTCTGAAGTTCTATCAAATTTTGTTTGAGCAGGCCGG

Coding sequence (CDS)

ATGGTGAGAATTAGTGTCTTGAACGACGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATGGTTATGCAGAAGCACGGATATATTGGGGAATTTGAGTATGTCGACGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGTAGGCTGAACAAGTGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTCAAGGAAATCGAAGGCTGGACTGCTAGGCTGCTCCCTTCCAGACAGTTTGGATTCATTGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAACGTTGGAGGGAAAGTCCTTGGTTTCTTCTATTGA

Protein sequence

MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY

Homology

[Close]

BLAST of CmoCh01G005930 vs. ExPASy Swiss-Prot
Match: P42798 (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-69
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy Swiss-Prot
Match: Q9LX88 (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 263.1 bits (671), Expect = 1.7e-69
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy Swiss-Prot
Match: Q00332 (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-69
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy Swiss-Prot
Match: Q9AT34 (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-68
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy Swiss-Prot
Match: O80646 (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 245.4 bits (625), Expect = 3.7e-64
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy TrEMBL
Match: A0A6J1I5M1 (40S ribosomal protein S15a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469448 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy TrEMBL
Match: A0A6J1GAW0 (40S ribosomal protein S15a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111452473 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy TrEMBL
Match: I3SJY8 (Putative ribosomal protein S8 OS=Medicago truncatula OX=3880 GN=25493391 PE=2 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy TrEMBL
Match: A0A6J1BY30 (40S ribosomal protein S15a-1 OS=Momordica charantia OX=3673 GN=LOC111006763 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. ExPASy TrEMBL
Match: A0A6J1FJB0 (40S ribosomal protein S15a-1 OS=Cucurbita moschata OX=3662 GN=LOC111444777 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. NCBI nr
Match: XP_022949003.1 (40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965015.1 40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965016.1 40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022970479.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_022970480.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_022997822.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_023520313.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >XP_023520314.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >XP_023523191.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >KAG7019221.1 40S ribosomal protein S15a-1, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7036895.1 40S ribosomal protein S15a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.2 bits (679), Expect = 1.5e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. NCBI nr
Match: XP_022134546.1 (40S ribosomal protein S15a-1 [Momordica charantia] >XP_022143687.1 40S ribosomal protein S15a-1 [Momordica charantia] >XP_022938588.1 40S ribosomal protein S15a-1 [Cucurbita moschata] >XP_022938589.1 40S ribosomal protein S15a-1 [Cucurbita moschata] >XP_022993711.1 40S ribosomal protein S15a-1 [Cucurbita maxima] >XP_023549602.1 40S ribosomal protein S15a-1 [Cucurbita pepo subsp. pepo] >KAG7016248.1 40S ribosomal protein S15a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 4.4e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. NCBI nr
Match: XP_013457334.1 (40S ribosomal protein S15a-1 [Medicago truncatula] >XP_013469871.1 40S ribosomal protein S15a-1 [Medicago truncatula] >AFK33558.1 unknown [Medicago truncatula] >AFK40580.1 unknown [Medicago truncatula] >KEH31365.1 ribosomal protein S8 [Medicago truncatula] >KEH43909.1 ribosomal protein S8 [Medicago truncatula] >RHN62853.1 putative ribosomal protein S8 [Medicago truncatula])

HSP 1 Score: 264.6 bits (675), Expect = 4.4e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. NCBI nr
Match: KAB1217918.1 (40S ribosomal protein S15a-1 [Morella rubra] >KAB1217942.1 40S ribosomal protein S15a-1 [Morella rubra])

HSP 1 Score: 263.8 bits (673), Expect = 7.6e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. NCBI nr
Match: MBA0576079.1 (hypothetical protein [Gossypium lobatum] >MBA0629454.1 hypothetical protein [Gossypium davidsonii] >MBA0665132.1 hypothetical protein [Gossypium klotzschianum] >MBA0696872.1 hypothetical protein [Gossypium aridum] >MBA0749886.1 hypothetical protein [Gossypium gossypioides] >MBA0780614.1 hypothetical protein [Gossypium trilobum])

HSP 1 Score: 263.5 bits (672), Expect = 9.9e-67
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 12  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 71

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 72  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 131

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 132 VGGKVLGFFY 141

[Close]

BLAST of CmoCh01G005930 vs. TAIR 10
Match: AT1G07770.1 (ribosomal protein S15A )

HSP 1 Score: 263.5 bits (672), Expect = 9.2e-71
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. TAIR 10
Match: AT1G07770.2 (ribosomal protein S15A )

HSP 1 Score: 263.5 bits (672), Expect = 9.2e-71
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. TAIR 10
Match: AT5G59850.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 263.5 bits (672), Expect = 9.2e-71
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. TAIR 10
Match: AT3G46040.1 (ribosomal protein S15A D )

HSP 1 Score: 263.1 bits (671), Expect = 1.2e-70
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmoCh01G005930 vs. TAIR 10
Match: AT2G39590.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 245.4 bits (625), Expect = 2.6e-65
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

The following BLAST results are available for this feature:

BLAST of CmoCh01G005930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42798	1.3e-69	98.46	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=...	[more]
Q9LX88	1.7e-69	98.46	40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=...	[more]
Q00332	3.8e-69	97.69	40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3	[more]
Q9AT34	1.9e-68	96.15	40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3	[more]
O80646	3.7e-64	90.77	40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=...	[more]

BLAST of CmoCh01G005930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5M1	7.4e-68	100.00	40S ribosomal protein S15a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469448 PE...	[more]
A0A6J1GAW0	7.4e-68	100.00	40S ribosomal protein S15a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111452473 ...	[more]
I3SJY8	2.2e-67	98.46	Putative ribosomal protein S8 OS=Medicago truncatula OX=3880 GN=25493391 PE=2 SV...	[more]
A0A6J1BY30	2.2e-67	98.46	40S ribosomal protein S15a-1 OS=Momordica charantia OX=3673 GN=LOC111006763 PE=3...	[more]
A0A6J1FJB0	2.2e-67	98.46	40S ribosomal protein S15a-1 OS=Cucurbita moschata OX=3662 GN=LOC111444777 PE=3 ...	[more]

BLAST of CmoCh01G005930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949003.1	1.5e-67	100.00	40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965015.1 40S ribos...	[more]
XP_022134546.1	4.4e-67	98.46	40S ribosomal protein S15a-1 [Momordica charantia] >XP_022143687.1 40S ribosomal...	[more]
XP_013457334.1	4.4e-67	98.46	40S ribosomal protein S15a-1 [Medicago truncatula] >XP_013469871.1 40S ribosomal...	[more]
KAB1217918.1	7.6e-67	98.46	40S ribosomal protein S15a-1 [Morella rubra] >KAB1217942.1 40S ribosomal protein...	[more]
MBA0576079.1	9.9e-67	97.69	hypothetical protein [Gossypium lobatum] >MBA0629454.1 hypothetical protein [Gos...	[more]

BLAST of CmoCh01G005930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07770.1	9.2e-71	98.46	ribosomal protein S15A	[more]
AT1G07770.2	9.2e-71	98.46	ribosomal protein S15A	[more]
AT5G59850.1	9.2e-71	98.46	Ribosomal protein S8 family protein	[more]
AT3G46040.1	1.2e-70	98.46	ribosomal protein S15A D	[more]
AT2G39590.1	2.6e-65	90.77	Ribosomal protein S8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 7..130 e-value: 3.8E-22 score: 78.6
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..130
IPR000630	Ribosomal protein S8	PROSITE	PS00053	RIBOSOMAL_S8	coord: 100..117
IPR000630	Ribosomal protein S8	HAMAP	MF_01302_A	Ribosomal_S8_A	coord: 2..130 score: 32.425301
None	No IPR available	GENE3D	3.30.1490.10		coord: 70..130 e-value: 1.2E-36 score: 126.1
None	No IPR available	GENE3D	3.30.1370.30		coord: 1..69 e-value: 3.1E-36 score: 125.1
None	No IPR available	PANTHER	PTHR11758:SF36	BNAA02G06730D PROTEIN	coord: 1..130
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	56047	Ribosomal protein S8	coord: 4..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G005930.1	CmoCh01G005930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome