CmoCh01G005820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G005820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	YrdC-like domain-containing protein
Location	Cmo_Chr01: 2946461 .. 2949869 (-)
RNA-Seq Expression	CmoCh01G005820
Synteny	CmoCh01G005820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACCCCGCTTGGGGTTGGCTTCTTGGTGACGACGGTTGGAACTAGGGCTCGAGTTGACAGCGGCTGCTATGCTGCCGACCACGATGAACACACTTCCGGCGAAAATGGTTGAGGGTCTCTCTATAATCAGAACGTTTGCAACGTTTCCTTCTTCTCAGCTAGGTTTGCTTTAATCTTTTAACGCTTTTTTAACTGTTTTGTATGATTATTGGAGGATTCAAACATGAATTTATACACTTAATTGCAATTTTAGGTGCTCCGAGTTATGGATTTGTTTCGTTCTTGCATCACAATAGAGGATCGAGGTTGAATTTTCCTAAAACGGTATGGAGTTTGGAAAAATGTAGTATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGGTATGCATTCCTTTTAATGGGTTGTTTCTGTAATTTCCTTTTCTATTTTGTGAGTTTCTTTTCTTTTTGCCAACTATGAAGGAGTTTTATCAATTGTAATATAGATTTTTCTTAAGATGAAGTCTTCATGGTAGGTGTAGGTGGGAAAGAACCTCCGATTCTTCCAAAATTTCTTAAAAATAGAGGATGGTCTTTGTGATCTTGTTTAGTATAAAGGTTTTTGGTTAAAGATCTTGGTTGAGTCAGGAGTACTGGTCGTATGAGCGTGGGTGGCACATGGTTGTTTGACTCTCGCTAGTCGATGTTTGCCTTTCATTGAGATGAGACGCCTTATGAATTCTCCCTATTCAACGAAGAGACAATTGTTTGACCGCACACGATGTTTTTGGCTTAGCTTCACACGATGATTTTGCACCCCTGATTGTGGCGAGTGGGAATAGTTGATCGTTGCCCAAGCTCGTTTTAGCGTATGACGCATGAGTGTCTCTCATGGTTGCTAGGATCGAGAGACTTTTTCGAGTTGGCAGATAGTCTTCTGGGAGAAATGTGGTGGTAAGGGAGAGAACTAGGGGGAGGTCATCTTCTTTAGTACTGTTACTAGGTGGCAGTGGCGTGAAGGATCGCTTTGCTACAATTTAGTTTCATGCCAAGCAAGGGGCTCTTCTTCAGGAAAAGATGTCTTACAGAGGCTTCGGTACGGGTGTAGCTAGTTTTAAATACTAAGGGAAAATGTTGCAGAGTAGCTTGGGAGATTCTTCATGGGAAGGTCTTCGTTCTTTATTTCACAGGCACGGACGAAAACGAGTGGATAATTTTCAAGGAGAAACTAGGAGTACTTTTGTTGCGGAGTTTGAACTTTCCTCCACTCTTTTAATGTCCTTACCCTTCTCTCATCGCTTGGACATCTTTTTCTTTTGAGAAGATGGTTAAGGAATCTGTTGCTTTGCAAGTGGAAGTGTGAATGTTGAAGGAGGGTGTGGTCGAGTTTATTTTTGATACTAGAAGAGTGGTTTTGGTGCTAAGTGAACTCTCTTCTAATTCTTGATCTTTGATTAATAATGGATTGTGAGAAGTCTGAATGTTTGGTAGAATAATTGCATTACTGATTAGATTCTGAGGAAAATACAACATAGTGATATGATGTTATAAGATTGAGGGATGATTATCAAATTCATCATTGTGTTAAAACATAATTGTTTCCACGCTCTTCAGGATCTAAAAATGGTTATCAATTATGCATCCTTTTAGAATAATTTTTCAATCTTTTAAAACGCTCTTCTTTCCTAGTTTGGAGGTGTTATCCTGTCTGTGAAATTATATGCACAAATTAACCATTTCTAAACTTAATAATGTTGCACTCTCCATTTATGTAACTGTGGTTTCTGTTGGGATTAATTTTGCAGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGTTTGTACTACAAATCTCTTTCTTTTGATAATGTAACCTTGACGAGCATTCTTTGATTGAAGAAAGTAGACGAGTAACTATTTTTTTGGGTAGCGTACTCGGCTTCTGTTGGGCGGGTTGAAACAATCTTTTGGATATTCTGTTCTTACGTTGATTAAACCGTTTTAATTTTTTTTAAATGCTAAAGAGTACTCTGGGAGGGGTCCTCTCCCTATGGAAACAAGATATTAATTTGACATATCCCTTATTAATGGATTGGACTGTCACACCTACATATCCAAGAATATGTTCATTTAGATTTTAGTCTCTAACCTTCCTGTAGTCTGAGTTTTTTACATTTAGATTTTTTGTAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGGTATGTTTGTTCTTGTGATTCTTCTATTTTCGTCGAATGACTCAAACAATGGTGTGTATCATAATAATGTTGATTCTACATTTGCAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGAGTATCAGAATCTTCTCCACTTCCCAAACCGTATCTGTTAGTCACTATAGATAGAGATTGCGATGAATTTTTTTAGGCCGAGTGAAAGTAGATCAATTATTATGGTTTAAACTGATATGAACCACGACCAAGGAATTTTCATATGTCAAGGTCCAATTACAAGGACGAGAATCAAAAAGCTACAACAAACTTTATATACTTATATTCAAGCTATGGTGAGCTCATCGTAAGAAATTCTAGAAGACGTTGTAGATCTCTCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAAAGATGAATTAAATGCATTTTAAGTTGCATTTAATGAACATGAGCTCAGCTAAATTTATAGCATATTTTATTTATTGCACTTATAATTTGACTATTTGTTTGTCATATTTAAACTAGTTTTAAATATAGGAGTTAAAAGTTATATTGTAACCCAAAGTTACTATATTCCACCGTTAACTAGTCAGGAGGCTATGAGGGAGTTACCTATCACTAAAGGAAGCCTTCTTTTCTTTGATTAGAGACATCAGAT

mRNA sequence

CAAAACCCCGCTTGGGGTTGGCTTCTTGGTGACGACGGTTGGAACTAGGGCTCGAGTTGACAGCGGCTGCTATGCTGCCGACCACGATGAACACACTTCCGGCGAAAATGGTTGAGGGTCTCTCTATAATCAGAACGTTTGCAACGTTTCCTTCTTCTCAGCTAGGTGCTCCGAGTTATGGATTTGTTTCGTTCTTGCATCACAATAGAGGATCGAGGTTGAATTTTCCTAAAACGGTATGGAGTTTGGAAAAATGTAGTATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGAGTATCAGAATCTTCTCCACTTCCCAAACCGTATCTGTTAGTCACTATAGATAGAGATTGCGATGAATTTTTTTAGGCCGAGTGAAAGTAGATCAATTATTATGGTTTAAACTGATATGAACCACGACCAAGGAATTTTCATATGTCAAGGTCCAATTACAAGGACGAGAATCAAAAAGCTACAACAAACTTTATATACTTATATTCAAGCTATGGTGAGCTCATCGTAAGAAATTCTAGAAGACGTTGTAGATCTCTCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAAAGATGAATTAAATGCATTTTAAGTTGCATTTAATGAACATGAGCTCAGCTAAATTTATAGCATATTTTATTTATTGCACTTATAATTTGACTATTTGTTTGTCATATTTAAACTAGTTTTAAATATAGGAGTTAAAAGTTATATTGTAACCCAAAGTTACTATATTCCACCGTTAACTAGTCAGGAGGCTATGAGGGAGTTACCTATCACTAAAGGAAGCCTTCTTTTCTTTGATTAGAGACATCAGAT

Coding sequence (CDS)

ATGCTGCCGACCACGATGAACACACTTCCGGCGAAAATGGTTGAGGGTCTCTCTATAATCAGAACGTTTGCAACGTTTCCTTCTTCTCAGCTAGGTGCTCCGAGTTATGGATTTGTTTCGTTCTTGCATCACAATAGAGGATCGAGGTTGAATTTTCCTAAAACGGTATGGAGTTTGGAAAAATGTAGTATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGA

Protein sequence

MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA

Homology

[Close]

BLAST of CmoCh01G005820 vs. ExPASy Swiss-Prot
Match: Q0VC80 (YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 8.1e-48
Identity = 100/202 (49.50%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 84  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 143
           A+  L+AG V+AVPTDTLYGLAC A  SEA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 144 VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 203
               +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++  G 
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 204 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 263
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G F
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 264 KIIRAGSAKEQTVATLERYSLL 281
            IIR G A E T A L+ Y LL
Sbjct: 251 GIIRPGCALESTSAILQEYGLL 269

[Close]

BLAST of CmoCh01G005820 vs. ExPASy Swiss-Prot
Match: Q3U5F4 (YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-44
Identity = 98/210 (46.67%), Postives = 135/210 (64.29%), Query Frame = 0


Query: 84  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 143
           A+  L+AG V+AVPTDTLYGLAC A SS A++ +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 144 VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 203
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++  G 
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 204 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 263
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 264 KIIRAGSAKEQTVATL-ERYSLLEEADSAA 288
            IIR G A E T + L ++Y LL    S +
Sbjct: 254 GIIRPGCALENTTSILQQKYGLLPSQGSCS 280

[Close]

BLAST of CmoCh01G005820 vs. ExPASy Swiss-Prot
Match: Q499R4 (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Yrdc PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-44
Identity = 98/210 (46.67%), Postives = 135/210 (64.29%), Query Frame = 0


Query: 84  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 143
           A+  L+AG V+AVPTDTLYGLAC A  S A++ +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 144 VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 203
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++  G 
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 193

Query: 204 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 263
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 253

Query: 264 KIIRAGSAKEQTVATLE-RYSLLEEADSAA 288
            IIR+G A E T A L+ +Y LL    S +
Sbjct: 254 GIIRSGCALENTTAILQGKYGLLPSQGSCS 280

[Close]

BLAST of CmoCh01G005820 vs. ExPASy Swiss-Prot
Match: Q86U90 (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-43
Identity = 100/221 (45.25%), Postives = 138/221 (62.44%), Query Frame = 0


Query: 69  SLQALRPASEAFAQ---EAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 128
           ++QA  P    + +    A+  L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR  
Sbjct: 55  AVQAASPERAGWTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 114

Query: 129 TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 188
             PLA+C+G V+D+ R+     +P GLL  LLPGPVT+V++R E   L K LNP    +G
Sbjct: 115 AKPLAVCLGRVADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVG 174

Query: 189 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL----- 248
           +R+PD  F++ +++     LALTSANLS Q SS+ V +F++LW   + V DGG +     
Sbjct: 175 IRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQS 234

Query: 249 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATL-ERYSLL 281
           P  R GST++DL+  G F IIR G A E T A L ++Y LL
Sbjct: 235 PECRLGSTVVDLSVPGKFGIIRPGCALESTTAILQQKYGLL 272

[Close]

BLAST of CmoCh01G005820 vs. ExPASy Swiss-Prot
Match: Q60369 (Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0062 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.8e-21
Identity = 62/182 (34.07%), Postives = 103/182 (56.59%), Query Frame = 0


Query: 64  MRVENSLQALRPASEAFAQEAIEALKA----GKVIAVPTDTLYGLACDACSSEAVNRIYE 123
           M ++N +  +   +E   ++ +E LK     GK++   TDTLYG++ +A + +AV ++Y 
Sbjct: 1   MGLKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYN 60

Query: 124 IKGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKR--GESSILEKSL 183
           IK R+   PL+ICV D ++I ++A  + L   ++D  LPGP+T++LK+  G   I+ K  
Sbjct: 61  IKRREFNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAK-- 120

Query: 184 NPGLESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFE-NLWQHCAYVYD 239
               + IG+R+PD   IR +S      L  TSAN+SG+ S   V + +  + +   YV D
Sbjct: 121 ----DYIGIRIPDEPIIRELSI---VPLTTTSANISGKESPTTVDEIDKEVLKKVDYVID 173

[Close]

BLAST of CmoCh01G005820 vs. ExPASy TrEMBL
Match: A0A6J1G9Z7 (yrdC domain-containing protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111452294 PE=3 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 1.0e-157
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0


Query: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60
           MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE
Sbjct: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60

Query: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120
           KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI
Sbjct: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120

Query: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180
           KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG
Sbjct: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180

Query: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL 240
           LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL
Sbjct: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL 240

Query: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 288
           PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

[Close]

BLAST of CmoCh01G005820 vs. ExPASy TrEMBL
Match: A0A6J1KDV4 (yrdC domain-containing protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492950 PE=3 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.5e-153
Identity = 278/287 (96.86%), Postives = 283/287 (98.61%), Query Frame = 0


Query: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60
           MLPTTMNT PAKMVEGLS+IRTFATFPSSQLGAP+YGFVSFLHHNRGSRLNFPKT WSLE
Sbjct: 1   MLPTTMNTFPAKMVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTAWSLE 60

Query: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120
           KCSMRVENSLQALRPASEAFAQEA EALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI
Sbjct: 61  KCSMRVENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120

Query: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180
           KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG
Sbjct: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180

Query: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL 240
           LESIGVRVPDADFIRLISRRSGTALALTSANLSG+PSSVCV+DFENLWQHCAYVYDGG+L
Sbjct: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGRPSSVCVNDFENLWQHCAYVYDGGVL 240

Query: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 288
           PAGRAGSTIIDLTKRG FKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 241 PAGRAGSTIIDLTKRGMFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

[Close]

BLAST of CmoCh01G005820 vs. ExPASy TrEMBL
Match: A0A0A0LUP4 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=3 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.0e-134
Identity = 244/278 (87.77%), Postives = 262/278 (94.24%), Query Frame = 0


Query: 6   MNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65
           MNTLPAKM + LS+IRTF TFPSSQLG+ +YG VSFL  NRGSR++F KT WSLEKC MR
Sbjct: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60

Query: 66  VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 125
           VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 126 TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 185
           TSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIG
Sbjct: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 186 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 245
           VRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 246 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 284
           GSTIIDLT++GTFKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAA 278

[Close]

BLAST of CmoCh01G005820 vs. ExPASy TrEMBL
Match: A0A5A7T5W1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00620 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.4e-132
Identity = 238/278 (85.61%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 6   MNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65
           MNTLPAKM + LS+IRTFATFPSS LG+ +YG VSFL  NRGSR++F KT WSLEKC M 
Sbjct: 1   MNTLPAKMADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMP 60

Query: 66  VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 125
           VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 126 TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 185
           TSPLAICVG VSDITR+A+ DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIG
Sbjct: 121 TSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 186 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 245
           VRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 246 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 284
           GSTI+DLT+RGTFKIIRAGSA++QT+ATL+RYSLLE A
Sbjct: 241 GSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAA 278

[Close]

BLAST of CmoCh01G005820 vs. ExPASy TrEMBL
Match: A0A1S3CNI2 (yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502936 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.4e-132
Identity = 238/278 (85.61%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 6   MNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65
           MNTLPAKM + LS+IRTFATFPSS LG+ +YG VSFL  NRGSR++F KT WSLEKC M 
Sbjct: 1   MNTLPAKMADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMP 60

Query: 66  VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 125
           VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 126 TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 185
           TSPLAICVG VSDITR+A+ DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIG
Sbjct: 121 TSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 186 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 245
           VRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 246 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 284
           GSTI+DLT+RGTFKIIRAGSA++QT+ATL+RYSLLE A
Sbjct: 241 GSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAA 278

[Close]

BLAST of CmoCh01G005820 vs. NCBI nr
Match: XP_022948702.1 (yrdC domain-containing protein, mitochondrial [Cucurbita moschata])

HSP 1 Score: 565.8 bits (1457), Expect = 2.1e-157
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0


Query: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60
           MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE
Sbjct: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60

Query: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120
           KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI
Sbjct: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120

Query: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180
           KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG
Sbjct: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180

Query: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL 240
           LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL
Sbjct: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL 240

Query: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 288
           PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

[Close]

BLAST of CmoCh01G005820 vs. NCBI nr
Match: KAG6607198.1 (YrdC domain-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 558.5 bits (1438), Expect = 3.3e-155
Identity = 284/287 (98.95%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60
           MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE
Sbjct: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60

Query: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120
           KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI
Sbjct: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120

Query: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180
           KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG
Sbjct: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180

Query: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL 240
           LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSV V+DFENLWQHCAYVYDGG+L
Sbjct: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVYVNDFENLWQHCAYVYDGGVL 240

Query: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 288
           PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

[Close]

BLAST of CmoCh01G005820 vs. NCBI nr
Match: XP_023521571.1 (yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523156.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 556.2 bits (1432), Expect = 1.6e-154
Identity = 280/287 (97.56%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60
           MLPTTMNTLPAKMVEGLS+IRTFATFPSSQLGAP+YGFVSFLHHNRGSRLNFPKTVWSLE
Sbjct: 1   MLPTTMNTLPAKMVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTVWSLE 60

Query: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120
           KCSMRVENSLQALRPASEAFAQEA EALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI
Sbjct: 61  KCSMRVENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120

Query: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180
           KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG
Sbjct: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180

Query: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL 240
           LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+L
Sbjct: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL 240

Query: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 288
           PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATL+RYSLLE+ADSAA
Sbjct: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLKRYSLLEDADSAA 287

[Close]

BLAST of CmoCh01G005820 vs. NCBI nr
Match: XP_022998259.1 (yrdC domain-containing protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 552.0 bits (1421), Expect = 3.1e-153
Identity = 278/287 (96.86%), Postives = 283/287 (98.61%), Query Frame = 0


Query: 1   MLPTTMNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLE 60
           MLPTTMNT PAKMVEGLS+IRTFATFPSSQLGAP+YGFVSFLHHNRGSRLNFPKT WSLE
Sbjct: 1   MLPTTMNTFPAKMVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTAWSLE 60

Query: 61  KCSMRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120
           KCSMRVENSLQALRPASEAFAQEA EALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI
Sbjct: 61  KCSMRVENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEI 120

Query: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180
           KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG
Sbjct: 121 KGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPG 180

Query: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL 240
           LESIGVRVPDADFIRLISRRSGTALALTSANLSG+PSSVCV+DFENLWQHCAYVYDGG+L
Sbjct: 181 LESIGVRVPDADFIRLISRRSGTALALTSANLSGRPSSVCVNDFENLWQHCAYVYDGGVL 240

Query: 241 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 288
           PAGRAGSTIIDLTKRG FKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 241 PAGRAGSTIIDLTKRGMFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

[Close]

BLAST of CmoCh01G005820 vs. NCBI nr
Match: XP_038893581.1 (yrdC domain-containing protein, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 498.4 bits (1282), Expect = 4.0e-137
Identity = 250/280 (89.29%), Postives = 264/280 (94.29%), Query Frame = 0


Query: 6   MNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65
           MN LPAKMVE LS+IRTF TFPSS LG+P+YG VSFL  NRGSR++FPKT WSLEKC MR
Sbjct: 1   MNILPAKMVESLSLIRTFVTFPSSHLGSPNYGLVSFLQQNRGSRVSFPKTTWSLEKCCMR 60

Query: 66  VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 125
           VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACSSEAV+RIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKL 120

Query: 126 TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 185
           TSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIG
Sbjct: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIG 180

Query: 186 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 245
           VRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 246 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADS 286
           GSTIIDLT+RGT+KI+RAGSAKEQTVA LERYSLLEEA S
Sbjct: 241 GSTIIDLTERGTYKILRAGSAKEQTVAILERYSLLEEAAS 280

[Close]

BLAST of CmoCh01G005820 vs. TAIR 10
Match: AT5G60590.2 (DHBP synthase RibB-like alpha/beta domain )

HSP 1 Score: 347.1 bits (889), Expect = 1.4e-95
Identity = 182/277 (65.70%), Postives = 210/277 (75.81%), Query Frame = 0


Query: 9   LPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNF-PKTVWSLEKCSMRVE 68
           L  ++ E L  I    + P  + G       S  + +R  R     K VWSLE+    V 
Sbjct: 3   LSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVV 62

Query: 69  NSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTS 128
           +    + PA+EA+AQEAIEA+K+ KVIAVPTDTLYG ACDACS EAV+RIYEIKGRKLTS
Sbjct: 63  SKSCLVHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTS 122

Query: 129 PLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVR 188
           PLAICVGDV DI R A   HLPHGLLDSLLPGPVT+VL+RGESSILEKSLNPG+ +IGVR
Sbjct: 123 PLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVR 182

Query: 189 VPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGS 248
           VPD +FIR +SR SG+ LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+LP+GRAGS
Sbjct: 183 VPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSGRAGS 242

Query: 249 TIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEAD 285
           TI+DLTK G +KIIR GSAK+ TVA LE+Y L EE +
Sbjct: 243 TIVDLTKVGKYKIIRPGSAKQATVAILEKYLLEEEEE 279

[Close]

BLAST of CmoCh01G005820 vs. TAIR 10
Match: AT5G60590.1 (DHBP synthase RibB-like alpha/beta domain )

HSP 1 Score: 169.5 bits (428), Expect = 4.0e-42
Identity = 93/160 (58.13%), Postives = 109/160 (68.12%), Query Frame = 0


Query: 9   LPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNF-PKTVWSLEKCSMRVE 68
           L  ++ E L  I    + P  + G       S  + +R  R     K VWSLE+    V 
Sbjct: 3   LSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVV 62

Query: 69  NSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTS 128
           +    + PA+EA+AQEAIEA+K+ KVIAVPTDTLYG ACDACS EAV+RIYEIKGRKLTS
Sbjct: 63  SKSCLVHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTS 122

Query: 129 PLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKR 168
           PLAICVGDV DI R A   HLPHGLLDSLLPGPVT+VL+R
Sbjct: 123 PLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQR 162

[Close]

BLAST of CmoCh01G005820 vs. TAIR 10
Match: AT3G01920.1 (DHBP synthase RibB-like alpha/beta domain )

HSP 1 Score: 65.9 bits (159), Expect = 6.2e-11
Identity = 61/207 (29.47%), Postives = 93/207 (44.93%), Query Frame = 0


Query: 82  QEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITR 141
           Q  I+ LK G V  +PTDT+Y +ACD  +  AV R+  IK  + + PL+I    + DI  
Sbjct: 84  QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 143

Query: 142 FAVADHLPHG----------LLDSLLPGPVTVVLKRGESSILEKSLNPGLES-------- 201
           F +    P G           +   LPGP T +L      + ++ +  G  S        
Sbjct: 144 FTMG--FPRGDGHGHANVFRAVKQCLPGPYTFIL-TASKELPKQCVGYGTTSVKYASRKN 203

Query: 202 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLW-----QHCAYVYDGG 261
           +GVR+ D    + I ++    L  TS  + G   +  + D   +      +   +V DGG
Sbjct: 204 VGVRISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVVDGG 263

Query: 262 ILPAGRAGSTIIDLTKRGTF-KIIRAG 265
           I  A    STI+D+T  G + K+IR G
Sbjct: 264 IRVA--EPSTIVDMT--GPYPKVIREG 281

The following BLAST results are available for this feature:

BLAST of CmoCh01G005820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0VC80	8.1e-48	49.50	YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2...	[more]
Q3U5F4	1.1e-44	46.67	YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc P...	[more]
Q499R4	1.4e-44	46.67	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Y...	[more]
Q86U90	2.1e-43	45.25	YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE...	[more]
Q60369	3.8e-21	34.07	Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain...	[more]

BLAST of CmoCh01G005820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9Z7	1.0e-157	100.00	yrdC domain-containing protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1KDV4	1.5e-153	96.86	yrdC domain-containing protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0LUP4	2.0e-134	87.77	YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 P...	[more]
A0A5A7T5W1	9.4e-132	85.61	YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CNI2	9.4e-132	85.61	yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

BLAST of CmoCh01G005820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948702.1	2.1e-157	100.00	yrdC domain-containing protein, mitochondrial [Cucurbita moschata]	[more]
KAG6607198.1	3.3e-155	98.95	YrdC domain-containing protein, mitochondrial, partial [Cucurbita argyrosperma s...	[more]
XP_023521571.1	1.6e-154	97.56	yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_022998259.1	3.1e-153	96.86	yrdC domain-containing protein, mitochondrial [Cucurbita maxima]	[more]
XP_038893581.1	4.0e-137	89.29	yrdC domain-containing protein, mitochondrial isoform X1 [Benincasa hispida]	[more]

BLAST of CmoCh01G005820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60590.2	1.4e-95	65.70	DHBP synthase RibB-like alpha/beta domain	[more]
AT5G60590.1	4.0e-42	58.13	DHBP synthase RibB-like alpha/beta domain	[more]
AT3G01920.1	6.2e-11	29.47	DHBP synthase RibB-like alpha/beta domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006070	YrdC-like domain	TIGRFAM	TIGR00057	TIGR00057	coord: 80..270 e-value: 1.4E-43 score: 146.5
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 86..264 e-value: 7.1E-47 score: 159.2
IPR006070	YrdC-like domain	PROSITE	PS51163	YRDC	coord: 78..266 score: 26.345156
None	No IPR available	GENE3D	3.90.870.10	DHBP synthase	coord: 70..275 e-value: 6.1E-58 score: 197.1
None	No IPR available	PANTHER	PTHR17490:SF10	YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL	coord: 33..284
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 33..284
IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	SUPERFAMILY	55821	YrdC/RibB	coord: 79..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G005820.1	CmoCh01G005820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000049	tRNA binding