CmoCh01G005510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G005510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zf-RVT domain-containing protein
Location	Cmo_Chr01: 2746793 .. 2749614 (+)
RNA-Seq Expression	CmoCh01G005510
Synteny	CmoCh01G005510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCCCAATATCTCTGATGAAGATAAGGGACCCAAGAATAGCGGAACAAGAAGCAGGTAGAGAATTTTCTTTGTTCTGCGCGAAAGAACTCACAATTCCTTCTCAATGGAGCTGACTCTGCCTACACCCTTGTTTGCCTCCTCCTCCAAGAGTACGCTTGAATTCTGTTTGCTTTGAATTTCGTTCCATTTCTCTGTTCCCCATGTTGCCAGATTGGGATTTTCCATTGATATCTGTTCATGTGGGTTCTTAGAGCTCTAACTTTCTTTCGCCATTTCTTTTCTTGCGATTGCCCTTTCGTTGTTTTCGGTCTTTCTGCAACAGGGTTTTGGTGGGTTTATCCATCAGTGTTGGGATTTTCCATGCCGGCGTGTTGTTTGACAAAAGTCGTTTGCCATAATTTGGTTGTTTTTGAAAGGTTTGAGGCCTGAGAGACTAGATTTGTGGGTTTGCTATGATTCATGTGATTGTTTGGTTGCTTACTCATCTTTAGTAATGGTTAATTAAGATGAATCTTTGGTTGGCGAGCATTGCTTAGTTGTTTGGACGGGATGGATTAGGACTATTGAGTGTTATGACGGGTGACAACAAAGGGGTTGTATACCATATTGCTGAAACCAAGGAGGCTTATGATTAAGGTCTTTTAGTTCATGTAAATTTGAGAAATGTAGGTCACGAAGTAGTGCAATGTACCACTATTGAAGACGTTGGTTTTGTATTGGGGTGGTTTAAGGGCACTCTGTAGCCTCAAGGTACCGATTGTCACAAAGAGGAGCCCTTAACATGCCTTGAGAAGAAATTTTGTCAACGATATCGTGCCCCTGGAGCGATATTGTGAGATCTCACATTAGTTGGAGAGAAGAACGAAACATTTTTTGTAAAGGTGTGGAAACCTCTCCCTAGCATATGCATTTTAAAACCCTTGAGGGGAAGCCTGAAAAGAACAATATATGCTAGCGGTGGGCTTGAGTCGTTACAAATGGTATAAGAACCAGATACCAGGCGGTGTGCTAGCGAGGACACTGGGCCGTGAAAGGATGTGAATTGTGAGATCCCACATCGATTGAAGAGGCGAACGAGTCTAGTGTTCGGGGTGGATTGTGAGATCCCACGTCGGTTGGAGAAGGGAACGAAACATTCTTTATAAGGGTGTGGAAACGTCTCCCTAGCAAATGTGTTTTAAAAACCTTGAGAGGAAGCCCTTAAGCAATCGTGACATGTTATTTCCGCTAGCTATTTGACTGTGATTGTTTACACAACTGTTTGATGCAACTCTTAGCAGAAAAGTGGTGTCAAAGCTGTTGATCATTGTTCTTTGCCTAACATTACAATGTCTTGTTAAAGCTCTACATTATGAATTTATGATGTGACATGTAAACTTTCTGCTGATTGAAATTCTGTTATTGTGAAGTAATTAGGGATCCTAAGCTAATCAACCATGGACTTCGGTTGTTGGACACCAATCCTATTTCAGCCGATTTGAAGCTACAAGGAGGGAGAAGAACACTGCCTATAGCTTCTTCCCTACCTGAAACAGCTGCTTCTGTGGCCATTGCTGCTACAGTTGTAGGTGCAGCAGCCACCTTCCTTTCCAGAAGAAACAAAGATTCTGAGGCGAAGGAGGTTGGCTTCAGATCTAAAACACCATTTATATGCCATTATCATATAGAATCAAGTGTTTGAAACCTGCATCTTGTCAGTTACTACACCGTTTTTGTTTTTGTGTCGTTACTGAAAAAGCACGGAAGCTTTAGTTTGGCTAACATGCTCGTGTCTAACACATATAGACACTTGGATGCTTGTTAGACATGTGCTAGATACTTGATAGCACAATAAACGTGAGACCCCACATTGATTAGAAAGGGGAACGAGTGTCAGCCAGAACGTTGGGCGGTGGGATTGTGGGATCTCACATCGGTTGGAGAGGAGAACAAAATATTCTTTATAAGGGTGTGGAAACCCTCCTTAGTAGACGCGTTTTTAAAACCTCAAGGGAAACCTCAAAGAGGACAATATCTGTTACTAATGAACTTGAGCTGTTACAAATGGTATCTGAGTCAATCACCTGGTCGGAGTAGGGCTAGACCCTCTCTATAGTAGATGTGTTTTGAAAACCGTGAGGCTGACAGTGATATGTAACGAGCCAAAACAGACAATATATACTAGCGGTGGGCTTGAGCTGTTATAATAAATACGTTAGACACATGCATAGGTTACTTATTTCGAATTCAAAACTTGTTCTTATCGTATTTGTATCATGTCATATCGATGTCTCGTGTCCATATCCTTGCTTCTTTTATTCGTATCTTTGTATGCAACTCTTGTGCTGATTTTGTCCATAAAATTCAGATTCCTTTGAGACCATGTGAAGACTGTGGAGGTTCAGGCCTGTGTTCTGAATGCAAAGGTGAAGGGTTTGTGCTGAAGAAACTGTCGGATGAAAATGCAGAGCGGGCACGGTTGGCTGCGAAGAACATGGCCACTCGGTTCACCGCAGCGTACAAATTTCTTGTCTTGTCTCTCTTTTTCTTGTTAGAAACCTTCAACTTTCAACTTATATCTGATCTTAATCCTTTCTCAGGCTTCCTAAAAAATGGAGCTACTGTTCCAAGTGTTCTTCTGCTCGTTCTTGTAGTACTTGTGGTGGCACGGGGACGTTCAACTCTTAGTCTTACAACCCGACAAACTCCTTATATCTCCGCATATTTTTCTGTCTCGTAAATTTCTCTCATTAGGAGTGTTCATAAGAATTCGATGACTCACAAAATTTAATCAACCCAATCTAATTCCTATGACTTGAATGGGGTTGAGTTCAAATAAA

mRNA sequence

TGTTCCCAATATCTCTGATGAAGATAAGGGACCCAAGAATAGCGGAACAAGAAGCAGGTAGAGAATTTTCTTTGTTCTGCGCGAAAGAACTCACAATTCCTTCTCAATGGAGCTGACTCTGCCTACACCCTTGTTTGCCTCCTCCTCCAAGATAATTAGGGATCCTAAGCTAATCAACCATGGACTTCGGTTGTTGGACACCAATCCTATTTCAGCCGATTTGAAGCTACAAGGAGGGAGAAGAACACTGCCTATAGCTTCTTCCCTACCTGAAACAGCTGCTTCTGTGGCCATTGCTGCTACAGTTGTAGGTGCAGCAGCCACCTTCCTTTCCAGAAGAAACAAAGATTCTGAGGCGAAGGAGGTTGGCTTCAGATCTAAAACACCATTTATATGCCATTATCATATAGAATCAAACTGTGGAGGTTCAGGCCTGTGTTCTGAATGCAAAGGTGAAGGGTTTGTGCTGAAGAAACTGTCGGATGAAAATGCAGAGCGGGCACGGTTGGCTGCGAAGAACATGGCCACTCGGTTCACCGCAGCGCTTCCTAAAAAATGGAGCTACTGTTCCAAGTGTTCTTCTGCTCGTTCTTGTAGTACTTGTGGTGGCACGGGGACGTTCAACTCTTAGTCTTACAACCCGACAAACTCCTTATATCTCCGCATATTTTTCTGTCTCGTAAATTTCTCTCATTAGGAGTGTTCATAAGAATTCGATGACTCACAAAATTTAATCAACCCAATCTAATTCCTATGACTTGAATGGGGTTGAGTTCAAATAAA

Coding sequence (CDS)

ATGGAGCTGACTCTGCCTACACCCTTGTTTGCCTCCTCCTCCAAGATAATTAGGGATCCTAAGCTAATCAACCATGGACTTCGGTTGTTGGACACCAATCCTATTTCAGCCGATTTGAAGCTACAAGGAGGGAGAAGAACACTGCCTATAGCTTCTTCCCTACCTGAAACAGCTGCTTCTGTGGCCATTGCTGCTACAGTTGTAGGTGCAGCAGCCACCTTCCTTTCCAGAAGAAACAAAGATTCTGAGGCGAAGGAGGTTGGCTTCAGATCTAAAACACCATTTATATGCCATTATCATATAGAATCAAACTGTGGAGGTTCAGGCCTGTGTTCTGAATGCAAAGGTGAAGGGTTTGTGCTGAAGAAACTGTCGGATGAAAATGCAGAGCGGGCACGGTTGGCTGCGAAGAACATGGCCACTCGGTTCACCGCAGCGCTTCCTAAAAAATGGAGCTACTGTTCCAAGTGTTCTTCTGCTCGTTCTTGTAGTACTTGTGGTGGCACGGGGACGTTCAACTCTTAG

Protein sequence

MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFVLKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS

Homology

[Close]

BLAST of CmoCh01G005510 vs. ExPASy TrEMBL
Match: A0A6J1G9T1 (uncharacterized protein LOC111452109 OS=Cucurbita moschata OX=3662 GN=LOC111452109 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 158/174 (90.80%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS
Sbjct: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFV 120
           VAIAATVVGAAATFLSRRNKDSEAKE+  R      C      +CGGSGLCSECKGEGFV
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRP-----C-----EDCGGSGLCSECKGEGFV 120

Query: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 164

[Close]

BLAST of CmoCh01G005510 vs. ExPASy TrEMBL
Match: A0A6J1KI37 (uncharacterized protein LOC111493423 OS=Cucurbita maxima OX=3661 GN=LOC111493423 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.5e-73
Identity = 153/174 (87.93%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLFASSSKIIRDPK INHGLRL D+NPISADLKLQGGRRTL IASSLPETAAS
Sbjct: 1   MELTLPTPLFASSSKIIRDPKPINHGLRLFDSNPISADLKLQGGRRTLTIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFV 120
           VAIAATVVGAAATFLSRRNKDSEA+E+  R      C      +CGGSGLCSECKGEGFV
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAEEIPLRP-----C-----EDCGGSGLCSECKGEGFV 120

Query: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 164

[Close]

BLAST of CmoCh01G005510 vs. ExPASy TrEMBL
Match: A0A0A0LVE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097700 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 6.0e-65
Identity = 141/174 (81.03%), Postives = 150/174 (86.21%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLF S  KI+R+ K  N+GL LLD+NP+SAD+KLQGGRRTL IASSLPETAAS
Sbjct: 1   MELTLPTPLFVSIPKIVRNSKPNNNGLCLLDSNPLSADVKLQGGRRTLTIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFV 120
           VAIAATVVGAAATFLSRRNK+SEA EV      P I       +CGGSGLCSECKGEGFV
Sbjct: 61  VAIAATVVGAAATFLSRRNKNSEAVEV------PLITC----EDCGGSGLCSECKGEGFV 120

Query: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGG+GT NS
Sbjct: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGSGTLNS 164

[Close]

BLAST of CmoCh01G005510 vs. ExPASy TrEMBL
Match: A0A1S3CIP4 (uncharacterized protein LOC103501412 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501412 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.9e-64
Identity = 140/174 (80.46%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLF S  KI+R  K  NHGL LL++ P+SAD+KLQGGRRTL IASSLPETAAS
Sbjct: 1   MELTLPTPLFVSIPKIVRSSKPNNHGLCLLNSIPLSADMKLQGGRRTLTIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFV 120
           VAIAATVVGAAATFLSRRNKDSEA EV      P I       +CGGSGLCSECKGEGFV
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAVEV------PLITC----EDCGGSGLCSECKGEGFV 120

Query: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGG+GT +S
Sbjct: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGSGTLSS 164

[Close]

BLAST of CmoCh01G005510 vs. ExPASy TrEMBL
Match: A0A1S3CJ25 (uncharacterized protein LOC103501412 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501412 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.8e-62
Identity = 139/180 (77.22%), Postives = 149/180 (82.78%), Query Frame = 0


Query: 1   MELTLPTPLF------ASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSL 60
           MELTLPTPLF       SS +++R  K  NHGL LL++ P+SAD+KLQGGRRTL IASSL
Sbjct: 1   MELTLPTPLFVSIPKKCSSCEVVRSSKPNNHGLCLLNSIPLSADMKLQGGRRTLTIASSL 60

Query: 61  PETAASVAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSEC 120
           PETAASVAIAATVVGAAATFLSRRNKDSEA EV      P I       +CGGSGLCSEC
Sbjct: 61  PETAASVAIAATVVGAAATFLSRRNKDSEAVEV------PLITC----EDCGGSGLCSEC 120

Query: 121 KGEGFVLKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           KGEGFVLKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGG+GT +S
Sbjct: 121 KGEGFVLKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGSGTLSS 170

[Close]

BLAST of CmoCh01G005510 vs. NCBI nr
Match: XP_022948420.1 (uncharacterized protein LOC111452109 [Cucurbita moschata] >KAG6607166.1 hypothetical protein SDJN03_00508, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036854.1 hypothetical protein SDJN02_00474 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 5.4e-76
Identity = 158/174 (90.80%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS
Sbjct: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFV 120
           VAIAATVVGAAATFLSRRNKDSEAKE+  R      C      +CGGSGLCSECKGEGFV
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRP-----C-----EDCGGSGLCSECKGEGFV 120

Query: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 164

[Close]

BLAST of CmoCh01G005510 vs. NCBI nr
Match: XP_023525360.1 (uncharacterized protein LOC111788983 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.9 bits (738), Expect = 2.9e-74
Identity = 155/174 (89.08%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLFASSSKIIRDPK INHGLRL D+NPISADLKLQGGRRTLPIASSLPETAAS
Sbjct: 1   MELTLPTPLFASSSKIIRDPKPINHGLRLFDSNPISADLKLQGGRRTLPIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFV 120
           VAIAATVVGAAATFLSRRNKDSEAKE+  R      C      +CGGSGLCSECKGEGFV
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRP-----C-----EDCGGSGLCSECKGEGFV 120

Query: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 164

[Close]

BLAST of CmoCh01G005510 vs. NCBI nr
Match: XP_022998903.1 (uncharacterized protein LOC111493423 [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 7.3e-73
Identity = 153/174 (87.93%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLFASSSKIIRDPK INHGLRL D+NPISADLKLQGGRRTL IASSLPETAAS
Sbjct: 1   MELTLPTPLFASSSKIIRDPKPINHGLRLFDSNPISADLKLQGGRRTLTIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFV 120
           VAIAATVVGAAATFLSRRNKDSEA+E+  R      C      +CGGSGLCSECKGEGFV
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAEEIPLRP-----C-----EDCGGSGLCSECKGEGFV 120

Query: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 LKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 164

[Close]

BLAST of CmoCh01G005510 vs. NCBI nr
Match: XP_023522425.1 (uncharacterized protein LOC111786358, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.8 bits (665), Expect = 8.6e-66
Identity = 139/160 (86.88%), Postives = 144/160 (90.00%), Query Frame = 0


Query: 15  KIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATF 74
           ++IRDPK INHGLRL D+NPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATF
Sbjct: 2   EVIRDPKPINHGLRLFDSNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATF 61

Query: 75  LSRRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFVLKKLSDENAERARL 134
           LSRRNKDSEAKE+  R      C      +CGGSGLCSECKGEGFVLKKLSDENAERARL
Sbjct: 62  LSRRNKDSEAKEIPLRP-----C-----EDCGGSGLCSECKGEGFVLKKLSDENAERARL 121

Query: 135 AAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           AAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 122 AAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 151

[Close]

BLAST of CmoCh01G005510 vs. NCBI nr
Match: XP_023522036.1 (uncharacterized protein LOC111785907, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 2.5e-65
Identity = 139/158 (87.97%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 17  IRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATFLS 76
           IRDPK INHGLRL D+NPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATFLS
Sbjct: 1   IRDPKPINHGLRLFDSNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATFLS 60

Query: 77  RRNKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFVLKKLSDENAERARLAA 136
           RRNKDSEAKE+  R      C      +CGGSGLCSECKGEGFVLKKLSDENAERARLAA
Sbjct: 61  RRNKDSEAKEIPLRP-----C-----EDCGGSGLCSECKGEGFVLKKLSDENAERARLAA 120

Query: 137 KNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 175
           KNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 KNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 148

[Close]

BLAST of CmoCh01G005510 vs. TAIR 10
Match: AT3G45050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 145.2 bits (365), Expect = 4.9e-35
Identity = 87/162 (53.70%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 10  FASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVG 69
           F SS   ++D + +N  L+             Q  +R+  +  +L ETA S+AIAATVVG
Sbjct: 13  FPSSVSSVKDVRFLNLDLK----------SSHQRAKRSSTVVPALAETAVSIAIAATVVG 72

Query: 70  AAATFLSRR-NKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFVLKKLSDEN 129
            AAT L RR NK SE  E   +      C       C GSG+C ECKGEGFVLKKLSD N
Sbjct: 73  TAATILVRRNNKASEEAEASMKE-----C-----EACLGSGICPECKGEGFVLKKLSDAN 132

Query: 130 AERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTG 171
           AE+ARLAAKNMATR+TA LPKKWSYC+KCSS RSC  CGG+G
Sbjct: 133 AEKARLAAKNMATRYTAGLPKKWSYCTKCSSTRSCMICGGSG 154

[Close]

BLAST of CmoCh01G005510 vs. TAIR 10
Match: AT3G45050.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 145.2 bits (365), Expect = 4.9e-35
Identity = 87/162 (53.70%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 10  FASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVG 69
           F SS   ++D + +N  L+             Q  +R+  +  +L ETA S+AIAATVVG
Sbjct: 13  FPSSVSSVKDVRFLNLDLK----------SSHQRAKRSSTVVPALAETAVSIAIAATVVG 72

Query: 70  AAATFLSRR-NKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFVLKKLSDEN 129
            AAT L RR NK SE  E   +      C       C GSG+C ECKGEGFVLKKLSD N
Sbjct: 73  TAATILVRRNNKASEEAEASMKE-----C-----EACLGSGICPECKGEGFVLKKLSDAN 132

Query: 130 AERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTG 171
           AE+ARLAAKNMATR+TA LPKKWSYC+KCSS RSC  CGG+G
Sbjct: 133 AEKARLAAKNMATRYTAGLPKKWSYCTKCSSTRSCMICGGSG 154

[Close]

BLAST of CmoCh01G005510 vs. TAIR 10
Match: AT3G45050.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 145.2 bits (365), Expect = 4.9e-35
Identity = 87/162 (53.70%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 10  FASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVG 69
           F SS   ++D + +N  L+             Q  +R+  +  +L ETA S+AIAATVVG
Sbjct: 13  FPSSVSSVKDVRFLNLDLK----------SSHQRAKRSSTVVPALAETAVSIAIAATVVG 72

Query: 70  AAATFLSRR-NKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFVLKKLSDEN 129
            AAT L RR NK SE  E   +      C       C GSG+C ECKGEGFVLKKLSD N
Sbjct: 73  TAATILVRRNNKASEEAEASMKE-----C-----EACLGSGICPECKGEGFVLKKLSDAN 132

Query: 130 AERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTG 171
           AE+ARLAAKNMATR+TA LPKKWSYC+KCSS RSC  CGG+G
Sbjct: 133 AEKARLAAKNMATRYTAGLPKKWSYCTKCSSTRSCMICGGSG 154

[Close]

BLAST of CmoCh01G005510 vs. TAIR 10
Match: AT3G45050.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-22
Identity = 68/137 (49.64%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 10  FASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVG 69
           F SS   ++D + +N  L+             Q  +R+  +  +L ETA S+AIAATVVG
Sbjct: 13  FPSSVSSVKDVRFLNLDLK----------SSHQRAKRSSTVVPALAETAVSIAIAATVVG 72

Query: 70  AAATFLSRR-NKDSEAKEVGFRSKTPFICHYHIESNCGGSGLCSECKGEGFVLKKLSDEN 129
            AAT L RR NK SE  E   +      C       C GSG+C ECKGEGFVLKKLSD N
Sbjct: 73  TAATILVRRNNKASEEAEASMKE-----C-----EACLGSGICPECKGEGFVLKKLSDAN 129

Query: 130 AERARLAAKNMATRFTA 146
           AE+ARLAAKNMATR+TA
Sbjct: 133 AEKARLAAKNMATRYTA 129

The following BLAST results are available for this feature:

BLAST of CmoCh01G005510 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G005510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9T1	2.6e-76	90.80	uncharacterized protein LOC111452109 OS=Cucurbita moschata OX=3662 GN=LOC1114521...	[more]
A0A6J1KI37	3.5e-73	87.93	uncharacterized protein LOC111493423 OS=Cucurbita maxima OX=3661 GN=LOC111493423...	[more]
A0A0A0LVE3	6.0e-65	81.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097700 PE=4 SV=1	[more]
A0A1S3CIP4	3.9e-64	80.46	uncharacterized protein LOC103501412 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CJ25	2.8e-62	77.22	uncharacterized protein LOC103501412 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmoCh01G005510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948420.1	5.4e-76	90.80	uncharacterized protein LOC111452109 [Cucurbita moschata] >KAG6607166.1 hypothet...	[more]
XP_023525360.1	2.9e-74	89.08	uncharacterized protein LOC111788983 [Cucurbita pepo subsp. pepo]	[more]
XP_022998903.1	7.3e-73	87.93	uncharacterized protein LOC111493423 [Cucurbita maxima]	[more]
XP_023522425.1	8.6e-66	86.88	uncharacterized protein LOC111786358, partial [Cucurbita pepo subsp. pepo]	[more]
XP_023522036.1	2.5e-65	87.97	uncharacterized protein LOC111785907, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G005510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45050.2	4.9e-35	53.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G45050.4	4.9e-35	53.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G45050.3	4.9e-35	53.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G45050.1	1.6e-22	49.64	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37230	OS06G0731300 PROTEIN	coord: 32..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G005510.1	CmoCh01G005510.1	mRNA