CmoCh01G005410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G005410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ABC transporter G family member 28
Location	Cmo_Chr01: 2667842 .. 2668324 (-)
RNA-Seq Expression	CmoCh01G005410
Synteny	CmoCh01G005410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGTCTGTTCCTTGCCTCTCCTTCCTTTCTTAATCTCCATCAATCTCTCATCGATTTCATTTCGTTTTTCTTGTTTCTAATTTGATTTGCAGGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA

mRNA sequence

ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA

Coding sequence (CDS)

ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA

Protein sequence

MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSKGTIKPYTHIPL

Homology

[Close]

BLAST of CmoCh01G005410 vs. ExPASy Swiss-Prot
Match: Q9SJK6 (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana OX=3702 GN=WBC30 PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 7.0e-07
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 47  EGGDGEESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTN 106
           +G D  ++   KA  ++   ++  R++N  +V K D+  + G+CI +   DW+ AFNF  
Sbjct: 31  DGDDYSKTGNPKALVSV-TNLIYTRLQNLKTVLKADVDRDLGYCIKNLKGDWNEAFNFDK 90

Query: 107 NSAFISNCAKKSKGTI 123
           N  F+SNC KK+ G +
Sbjct: 91  NLDFLSNCVKKNDGDL 105

[Close]

BLAST of CmoCh01G005410 vs. ExPASy Swiss-Prot
Match: Q9MAG3 (ABC transporter G family member 24 OS=Arabidopsis thaliana OX=3702 GN=ABCG24 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-06
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 51  GEESAFEK-ATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSA 110
           G+ S F   A   ++ ++V   + N T+    ++     FC+ D DADW+ AFNF++N  
Sbjct: 50  GDTSDFNNPAVLPLVTQMVYRSLSNSTAALNRELGIRAKFCVKDPDADWNRAFNFSSNLN 109

Query: 111 FISNCAKKSKGTI 123
           F+S+C KK++G+I
Sbjct: 110 FLSSCIKKTQGSI 122

[Close]

BLAST of CmoCh01G005410 vs. ExPASy TrEMBL
Match: A0A6J1GAG0 (ABC transporter G family member 28 OS=Cucurbita moschata OX=3662 GN=LOC111452389 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60
           MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT
Sbjct: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60

Query: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK
Sbjct: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 119

[Close]

BLAST of CmoCh01G005410 vs. ExPASy TrEMBL
Match: A0A6J1KFF4 (ABC transporter G family member 28 OS=Cucurbita maxima OX=3661 GN=LOC111493380 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 111/119 (93.28%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60
           MRKEMKFEIIALFSISFLLLLLLRSV+AQE SAA DQEA SE+DYEEGGDG ES FEKAT
Sbjct: 1   MRKEMKFEIIALFSISFLLLLLLRSVEAQEDSAAVDQEANSETDYEEGGDGVESDFEKAT 60

Query: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           SNILA+VVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK
Sbjct: 61  SNILADVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 119

[Close]

BLAST of CmoCh01G005410 vs. ExPASy TrEMBL
Match: A0A6J1DJ25 (ABC transporter G family member 28 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020503 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 64/114 (56.14%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 10  IALFSISFLLLLL---LRSVQAQEVSAATDQEAISESDYEEGGD-GEESAFEKATSNILA 69
           IA+    FL+L+      SV+AQ+ S           DY E  D G++S    AT  ILA
Sbjct: 17  IAICFCFFLVLICSTNFCSVRAQDYS----------EDYTEDYDYGDDSGVNSATGAILA 76

Query: 70  EVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           E+VNDRIKNFT++FKDDI +NFGFCIADA+ DWDGAFNFT NS FIS CA+KSK
Sbjct: 77  ELVNDRIKNFTAIFKDDINKNFGFCIADANVDWDGAFNFTGNSTFISTCARKSK 120

[Close]

BLAST of CmoCh01G005410 vs. ExPASy TrEMBL
Match: A0A6J1DHF9 (ABC transporter G family member 28 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020503 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 64/114 (56.14%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 10  IALFSISFLLLLL---LRSVQAQEVSAATDQEAISESDYEEGGD-GEESAFEKATSNILA 69
           IA+    FL+L+      SV+AQ+ S           DY E  D G++S    AT  ILA
Sbjct: 17  IAICFCFFLVLICSTNFCSVRAQDYS----------EDYTEDYDYGDDSGVNSATGAILA 76

Query: 70  EVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           E+VNDRIKNFT++FKDDI +NFGFCIADA+ DWDGAFNFT NS FIS CA+KSK
Sbjct: 77  ELVNDRIKNFTAIFKDDINKNFGFCIADANVDWDGAFNFTGNSTFISTCARKSK 120

[Close]

BLAST of CmoCh01G005410 vs. ExPASy TrEMBL
Match: A0A0A0LVG3 (ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G118370 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.3e-19
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 1   MRKEMKFEIIALF----SISFLLLLLLRSVQAQEVSAATDQEAISESDY---EEGGDGEE 60
           M KE  F    LF    SIS  LLLLL SV         + +  S  DY   +EGG G  
Sbjct: 1   MNKEKTFH-CTLFSFSSSISIFLLLLLISV------GFVEGQDYSTEDYDYDDEGGGGGG 60

Query: 61  SA------FEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFT-N 120
                    + AT +ILA++VNDRIKNFT+VFKDDIQ++FGFCI+DA+ADWDGAFNFT +
Sbjct: 61  GGGIGGLDLQSATGDILAKLVNDRIKNFTTVFKDDIQKHFGFCISDANADWDGAFNFTRS 120

[Close]

BLAST of CmoCh01G005410 vs. NCBI nr
Match: XP_023523960.1 (ABC transporter G family member 28-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023523961.1 ABC transporter G family member 28-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60
           MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT
Sbjct: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60

Query: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK
Sbjct: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 119

[Close]

BLAST of CmoCh01G005410 vs. NCBI nr
Match: KAG6607153.1 (ABC transporter G family member 28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60
           MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT
Sbjct: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60

Query: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK
Sbjct: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 119

[Close]

BLAST of CmoCh01G005410 vs. NCBI nr
Match: XP_022948848.1 (ABC transporter G family member 28 [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60
           MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT
Sbjct: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60

Query: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK
Sbjct: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 119

[Close]

BLAST of CmoCh01G005410 vs. NCBI nr
Match: KAG7036841.1 (ABC transporter G family member 28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.8 bits (569), Expect = 8.7e-55
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60
           MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT
Sbjct: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60

Query: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           SN+LAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK
Sbjct: 61  SNMLAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 119

[Close]

BLAST of CmoCh01G005410 vs. NCBI nr
Match: XP_022998839.1 (ABC transporter G family member 28 [Cucurbita maxima])

HSP 1 Score: 209.1 bits (531), Expect = 2.2e-50
Identity = 111/119 (93.28%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MRKEMKFEIIALFSISFLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKAT 60
           MRKEMKFEIIALFSISFLLLLLLRSV+AQE SAA DQEA SE+DYEEGGDG ES FEKAT
Sbjct: 1   MRKEMKFEIIALFSISFLLLLLLRSVEAQEDSAAVDQEANSETDYEEGGDGVESDFEKAT 60

Query: 61  SNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 120
           SNILA+VVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK
Sbjct: 61  SNILADVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKSK 119

[Close]

BLAST of CmoCh01G005410 vs. TAIR 10
Match: AT2G37010.1 (non-intrinsic ABC protein 12 )

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-08
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 47  EGGDGEESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTN 106
           +G D  ++   KA  ++   ++  R++N  +V K D+  + G+CI +   DW+ AFNF  
Sbjct: 31  DGDDYSKTGNPKALVSV-TNLIYTRLQNLKTVLKADVDRDLGYCIKNLKGDWNEAFNFDK 90

Query: 107 NSAFISNCAKKSKGTI 123
           N  F+SNC KK+ G +
Sbjct: 91  NLDFLSNCVKKNDGDL 105

[Close]

BLAST of CmoCh01G005410 vs. TAIR 10
Match: AT1G53390.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-07
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 51  GEESAFEK-ATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSA 110
           G+ S F   A   ++ ++V   + N T+    ++     FC+ D DADW+ AFNF++N  
Sbjct: 50  GDTSDFNNPAVLPLVTQMVYRSLSNSTAALNRELGIRAKFCVKDPDADWNRAFNFSSNLN 109

Query: 111 FISNCAKKSKGTI 123
           F+S+C KK++G+I
Sbjct: 110 FLSSCIKKTQGSI 122

The following BLAST results are available for this feature:

BLAST of CmoCh01G005410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJK6	7.0e-07	34.21	Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9MAG3	4.5e-06	35.62	ABC transporter G family member 24 OS=Arabidopsis thaliana OX=3702 GN=ABCG24 PE=...	[more]

BLAST of CmoCh01G005410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAG0	1.9e-55	100.00	ABC transporter G family member 28 OS=Cucurbita moschata OX=3662 GN=LOC111452389...	[more]
A0A6J1KFF4	1.1e-50	93.28	ABC transporter G family member 28 OS=Cucurbita maxima OX=3661 GN=LOC111493380 P...	[more]
A0A6J1DJ25	3.4e-20	56.14	ABC transporter G family member 28 isoform X1 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1DHF9	3.4e-20	56.14	ABC transporter G family member 28 isoform X2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LVG3	8.3e-19	53.38	ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G11...	[more]

BLAST of CmoCh01G005410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523960.1	3.9e-55	100.00	ABC transporter G family member 28-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]
KAG6607153.1	3.9e-55	100.00	ABC transporter G family member 28, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022948848.1	3.9e-55	100.00	ABC transporter G family member 28 [Cucurbita moschata]	[more]
KAG7036841.1	8.7e-55	99.16	ABC transporter G family member 28, partial [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022998839.1	2.2e-50	93.28	ABC transporter G family member 28 [Cucurbita maxima]	[more]

BLAST of CmoCh01G005410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37010.1	5.0e-08	34.21	non-intrinsic ABC protein 12	[more]
AT1G53390.1	3.2e-07	35.62	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G005410.1	CmoCh01G005410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding