CmoCh01G004740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G004740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L7/L12
Location	Cmo_Chr01: 2264307 .. 2264888 (+)
RNA-Seq Expression	CmoCh01G004740
Synteny	CmoCh01G004740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGATTGCAGTTGCACAATCCCTTCAAGCCCGTTCCACACTTCCTAAAATCATTGGGTTGTTGCAGGTCCGCTTCTTCCAGCCTGATTTTACTCCCAGAGACCCGAATGCCAAGCCAAAAAGATACAAGTATCCACCTTTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTAATAAAATCATTCAGCTAGCTGAAAGAATTGCAGCACTGCCTGTCGATGAGCGTTGCCAGATTGGTCCCGCACTCACTGAAAGGCTTAAACATCCTAAGCTGGAGCAAATTTCAGTTGATGGTATGGACATGGGTTCCGGAGGAGGAGCAGCCACAGGATCTTCCAAAGTAGAGGAGAAAAAGGAGAAAACCGCTTTCGACGTGAAGTTAGAGAAGTTCGAGGCAGCTGCCAAAATTAAGGTGATTAAAGAAGTGAGGGCTTTCACTAATTTGGGTCTGAAAGAGGCAAAAGACTTAGTAGAGAAAGTACCTGCAATTCTTAAGCAAGGAGTGACCAAGGAGGAAGCGAACAGCATTATCGAAAAAATCAAAGCTGCTGGAGGGGTTGCAGTCATGGAGTAA

mRNA sequence

ATGAAGATGATTGCAGTTGCACAATCCCTTCAAGCCCGTTCCACACTTCCTAAAATCATTGGGTTGTTGCAGGTCCGCTTCTTCCAGCCTGATTTTACTCCCAGAGACCCGAATGCCAAGCCAAAAAGATACAAGTATCCACCTTTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTAATAAAATCATTCAGCTAGCTGAAAGAATTGCAGCACTGCCTGTCGATGAGCGTTGCCAGATTGGTCCCGCACTCACTGAAAGGCTTAAACATCCTAAGCTGGAGCAAATTTCAGTTGATGGTATGGACATGGGTTCCGGAGGAGGAGCAGCCACAGGATCTTCCAAAGTAGAGGAGAAAAAGGAGAAAACCGCTTTCGACGTGAAGTTAGAGAAGTTCGAGGCAGCTGCCAAAATTAAGGTGATTAAAGAAGTGAGGGCTTTCACTAATTTGGGTCTGAAAGAGGCAAAAGACTTAGTAGAGAAAGTACCTGCAATTCTTAAGCAAGGAGTGACCAAGGAGGAAGCGAACAGCATTATCGAAAAAATCAAAGCTGCTGGAGGGGTTGCAGTCATGGAGTAA

Coding sequence (CDS)

ATGAAGATGATTGCAGTTGCACAATCCCTTCAAGCCCGTTCCACACTTCCTAAAATCATTGGGTTGTTGCAGGTCCGCTTCTTCCAGCCTGATTTTACTCCCAGAGACCCGAATGCCAAGCCAAAAAGATACAAGTATCCACCTTTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTAATAAAATCATTCAGCTAGCTGAAAGAATTGCAGCACTGCCTGTCGATGAGCGTTGCCAGATTGGTCCCGCACTCACTGAAAGGCTTAAACATCCTAAGCTGGAGCAAATTTCAGTTGATGGTATGGACATGGGTTCCGGAGGAGGAGCAGCCACAGGATCTTCCAAAGTAGAGGAGAAAAAGGAGAAAACCGCTTTCGACGTGAAGTTAGAGAAGTTCGAGGCAGCTGCCAAAATTAAGGTGATTAAAGAAGTGAGGGCTTTCACTAATTTGGGTCTGAAAGAGGCAAAAGACTTAGTAGAGAAAGTACCTGCAATTCTTAAGCAAGGAGTGACCAAGGAGGAAGCGAACAGCATTATCGAAAAAATCAAAGCTGCTGGAGGGGTTGCAGTCATGGAGTAA

Protein sequence

MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPSNKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEKKEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSIIEKIKAAGGVAVME

Homology

[Close]

BLAST of CmoCh01G004740 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-14
Identity = 52/134 (38.81%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 60  SNKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEE 119
           S K  ++ + + +L + E  ++   + E           V     G+GGGA   S+  E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGA---SAAGEA 61

Query: 120 KKEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSI 179
            +EKT FDV LE F+AAAKIKV+KEVR  T LGL EAK +VE  P  +K+G +KE+A ++
Sbjct: 62  AEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEAL 121

Query: 180 IEKIKAAGGVAVME 194
            + I+A GG   ++
Sbjct: 122 KKAIEAVGGKVTLK 132

[Close]

BLAST of CmoCh01G004740 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 49/132 (37.12%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           + I  + E++++L + +  ++   L E         ++V     G    A          
Sbjct: 2   SNIESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAAVA-------- 61

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
            EKT F+V LE F+A  KI VIKEVRA T LGLKEAKD VE  P  LK GV+K+EA  + 
Sbjct: 62  -EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELK 121

Query: 181 EKIKAAGGVAVM 193
           +K++AAG   ++
Sbjct: 122 KKLEAAGATIIL 124

[Close]

BLAST of CmoCh01G004740 vs. ExPASy Swiss-Prot
Match: Q46HH2 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=rplL PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-13
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 109 GAATGSSKVEEKKEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           GAA G    +  +EKT F+V LE FEA++KIKV+KEVR  T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 169 QGVTKEEANSIIEKIKAAGGVAVME 194
           +G TKE+A ++ + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]

BLAST of CmoCh01G004740 vs. ExPASy Swiss-Prot
Match: Q2JM48 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rplL PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-13
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 59  PSNKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVE 118
           PS ++ ++ E + AL + E  ++  A+ E              M       AA  ++  E
Sbjct: 2   PSERVAKILEELKALSLLEASELVKAIEETFGVSAAAPAGGMVMAAPVAAAAAAPAAAPE 61

Query: 119 EKKEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANS 178
             +E+TAFDV LE   A  KI ++K VR  T LGLK+AKDLVE  P  +K+GV KEEAN 
Sbjct: 62  PVEEQTAFDVILEAVPADKKIAILKVVRELTGLGLKDAKDLVEAAPKPVKEGVAKEEAND 121

Query: 179 IIEKIKAAG 188
           I +K++ AG
Sbjct: 122 IKKKLEEAG 130

[Close]

BLAST of CmoCh01G004740 vs. ExPASy Swiss-Prot
Match: A2C031 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=rplL PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-13
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 109 GAATGSSKVEEKKEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           GAA G    +  +EKT F+V LE F+A++KIKV+KEVR  T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 169 QGVTKEEANSIIEKIKAAGGVAVME 194
           +G TKE+A ++ + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]

BLAST of CmoCh01G004740 vs. ExPASy TrEMBL
Match: A0A6J1GD07 (uncharacterized protein LOC111452831 OS=Cucurbita moschata OX=3662 GN=LOC111452831 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.6e-98
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CmoCh01G004740 vs. ExPASy TrEMBL
Match: A0A6J1K6S5 (uncharacterized protein LOC111492812 OS=Cucurbita maxima OX=3661 GN=LOC111492812 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.3e-96
Identity = 189/193 (97.93%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MKMI VAQSLQARS LPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKMITVAQSLQARSALPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMD+GS GGAATGSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDLGSEGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CmoCh01G004740 vs. ExPASy TrEMBL
Match: A0A6J1DM08 (uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022207 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.1e-87
Identity = 169/193 (87.56%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MK++AVA+SLQ  STLPK+IG  QVRFFQPDF PRD  AKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKLVAVARSLQVHSTLPKVIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           +KIIQLAE+I ALPVDERCQIGPALTERL+HPKL+ ISVDG+DMGS GGA  GSSKVEEK
Sbjct: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CmoCh01G004740 vs. ExPASy TrEMBL
Match: A0A1S3BPI3 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.4e-84
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MK+  VA+SLQARSTL KIIGL QVRFFQPDFTPRDP AKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           +KII LAERIAALP  ER QIGP L E+L+HPKL++ISVDG+DMGS GGAA GSS VEEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKF+AA+KIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CmoCh01G004740 vs. ExPASy TrEMBL
Match: A0A5A7U2A3 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00400 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.4e-84
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MK+  VA+SLQARSTL KIIGL QVRFFQPDFTPRDP AKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           +KII LAERIAALP  ER QIGP L E+L+HPKL++ISVDG+DMGS GGAA GSS VEEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKF+AA+KIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CmoCh01G004740 vs. NCBI nr
Match: XP_022949504.1 (uncharacterized protein LOC111452831 [Cucurbita moschata])

HSP 1 Score: 368.6 bits (945), Expect = 3.2e-98
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CmoCh01G004740 vs. NCBI nr
Match: KAG6607092.1 (50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364.0 bits (933), Expect = 8.0e-97
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MKMIAVAQSLQARSTLPKIIG LQVRFFQPDFTPRDPNAKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGSLQVRFFQPDFTPRDPNAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVM+
Sbjct: 181 EKIKAAGGVAVMD 193

[Close]

BLAST of CmoCh01G004740 vs. NCBI nr
Match: KAG7036781.1 (50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.0 bits (933), Expect = 8.0e-97
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MKMIAVAQSLQARSTLPKIIG LQVRFFQPDFTPRDPNAKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGSLQVRFFQPDFTPRDPNAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVM+
Sbjct: 181 EKIKAAGGVAVMD 193

[Close]

BLAST of CmoCh01G004740 vs. NCBI nr
Match: XP_023525921.1 (uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MKMIAVAQSLQARSTLPKIIG LQVRFFQPDFTPRDPNAKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGSLQVRFFQPDFTPRDPNAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           NKIIQLAERIAALPVDERCQIGP LTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPTLTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CmoCh01G004740 vs. NCBI nr
Match: XP_022998047.1 (uncharacterized protein LOC111492812 [Cucurbita maxima])

HSP 1 Score: 360.9 bits (925), Expect = 6.8e-96
Identity = 189/193 (97.93%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MKMI VAQSLQARS LPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKMITVAQSLQARSALPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMD+GS GGAATGSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDLGSEGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CmoCh01G004740 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59
Identity = 126/193 (65.28%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MK+I++ +++++R   P++I  +QVRF Q D   +   AKPK+YKYP  YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           +KI++LAERIAAL  +ER QIGPAL E L+ PK + IS DG+    G    TG+  VEEK
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGI----GAKQDTGAGNVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKF A+ KIKVIKEVR FT+LGLKEAK+LVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of CmoCh01G004740 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59
Identity = 126/193 (65.28%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MK+I++ +++++R   P++I  +QVRF Q D   +   AKPK+YKYP  YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           +KI++LAERIAAL  +ER QIGPAL E L+ PK + IS DG+    G    TG+  VEEK
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGI----GAKQDTGAGNVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKF A+ KIKVIKEVR FT+LGLKEAK+LVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of CmoCh01G004740 vs. TAIR 10
Match: AT3G06040.3 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59
Identity = 126/193 (65.28%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60
           MK+I++ +++++R   P++I  +QVRF Q D   +   AKPK+YKYP  YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120
           +KI++LAERIAAL  +ER QIGPAL E L+ PK + IS DG+    G    TG+  VEEK
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGI----GAKQDTGAGNVEEK 120

Query: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180
           KEKTAFDVKLEKF A+ KIKVIKEVR FT+LGLKEAK+LVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of CmoCh01G004740 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-28
Identity = 70/154 (45.45%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 47  PPFYDPYGPRPPPSNKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISV------D 106
           P  +DP   R PP++++ +L + I++L + E  ++G  + ++    +L  ++V       
Sbjct: 55  PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGG 114

Query: 107 GMDMGSGGGAATGSSKVEEKK-EKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDL 166
           G+ +G GGG  + S   EE K EKT F++KLE FEA+AKIK+IKE+R+FT+LGLKEAK L
Sbjct: 115 GVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKAL 174

Query: 167 VEKVPAILKQGVTKEEANSIIEKIKAAGGVAVME 194
           VEK PAILK G++KEE   I+EK+KA G   V+E
Sbjct: 175 VEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of CmoCh01G004740 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-28
Identity = 70/154 (45.45%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 47  PPFYDPYGPRPPPSNKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISV------D 106
           P  +DP   R PP++++ +L + I++L + E  ++G  + ++    +L  ++V       
Sbjct: 55  PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGG 114

Query: 107 GMDMGSGGGAATGSSKVEEKK-EKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDL 166
           G+ +G GGG  + S   EE K EKT F++KLE FEA+AKIK+IKE+R+FT+LGLKEAK L
Sbjct: 115 GVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKAL 174

Query: 167 VEKVPAILKQGVTKEEANSIIEKIKAAGGVAVME 194
           VEK PAILK G++KEE   I+EK+KA G   V+E
Sbjct: 175 VEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

The following BLAST results are available for this feature:

BLAST of CmoCh01G004740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9BDG4	3.9e-14	38.81	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930...	[more]
P41189	1.1e-13	37.12	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]
Q46HH2	2.0e-13	50.59	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) OX=59920...	[more]
Q2JM48	3.3e-13	38.76	50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32...	[more]
A2C031	4.4e-13	49.41	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=16755...	[more]

BLAST of CmoCh01G004740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GD07	1.6e-98	100.00	uncharacterized protein LOC111452831 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1K6S5	3.3e-96	97.93	uncharacterized protein LOC111492812 OS=Cucurbita maxima OX=3661 GN=LOC111492812...	[more]
A0A6J1DM08	8.1e-87	87.56	uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A1S3BPI3	6.4e-84	86.53	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1	[more]
A0A5A7U2A3	6.4e-84	86.53	50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of CmoCh01G004740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949504.1	3.2e-98	100.00	uncharacterized protein LOC111452831 [Cucurbita moschata]	[more]
KAG6607092.1	8.0e-97	98.45	50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7036781.1	8.0e-97	98.45	50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023525921.1	1.0e-96	98.45	uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo]	[more]
XP_022998047.1	6.8e-96	97.93	uncharacterized protein LOC111492812 [Cucurbita maxima]	[more]

BLAST of CmoCh01G004740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06040.1	1.4e-59	65.28	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.2	1.4e-59	65.28	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.3	1.4e-59	65.28	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G70190.1	6.4e-28	45.45	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT1G70190.2	6.4e-28	45.45	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 126..189 e-value: 1.5E-21 score: 76.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 119..192 e-value: 2.8E-22 score: 80.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 122..192
None	No IPR available	PANTHER	PTHR45987:SF6	RIBOSOMAL PROTEIN L12/ ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS FAMILY PROTEIN	coord: 1..193
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..193
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 62..192 e-value: 9.72642E-33 score: 112.249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G004740.1	CmoCh01G004740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome