CmoCh01G004140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G004140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transmembrane protein 33 homolog
Location	Cmo_Chr01: 2020854 .. 2021054 (+)
RNA-Seq Expression	CmoCh01G004140
Synteny	CmoCh01G004140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAAATCAGCGAAGAAACTCAGAGGCTTAAGCGAATTGCGGCGGCGACTTACGACTACGACAACGACCCCCGATGGGCCGATTACTGGTCCAACATTCTCATTCCTCCCAACTTGGTTTCTCGCTCCGACGTCACCGATCACTTCAAACGAAAATTCTACCAGCGCTACATCGTCGGTTCTTTCTCTGATCTGTAG

mRNA sequence

ATGGGGGAAATCAGCGAAGAAACTCAGAGGCTTAAGCGAATTGCGGCGGCGACTTACGACTACGACAACGACCCCCGATGGGCCGATTACTGGTCCAACATTCTCATTCCTCCCAACTTGGTTTCTCGCTCCGACGTCACCGATCACTTCAAACGAAAATTCTACCAGCGCTACATCGTCGGTTCTTTCTCTGATCTGTAG

Coding sequence (CDS)

ATGGGGGAAATCAGCGAAGAAACTCAGAGGCTTAAGCGAATTGCGGCGGCGACTTACGACTACGACAACGACCCCCGATGGGCCGATTACTGGTCCAACATTCTCATTCCTCCCAACTTGGTTTCTCGCTCCGACGTCACCGATCACTTCAAACGAAAATTCTACCAGCGCTACATCGTCGGTTCTTTCTCTGATCTGTAG

Protein sequence

MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYIVGSFSDL

Homology

[Close]

BLAST of CmoCh01G004140 vs. ExPASy TrEMBL
Match: A0A6J1KF32 (transmembrane protein 33 homolog OS=Cucurbita maxima OX=3661 GN=LOC111493303 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI
Sbjct: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. ExPASy TrEMBL
Match: A0A6J1GAW8 (uncharacterized protein LOC111452483 OS=Cucurbita moschata OX=3662 GN=LOC111452483 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI
Sbjct: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. ExPASy TrEMBL
Match: A0A6J1CQJ0 (uncharacterized protein LOC111013250 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013250 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.8e-23
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          M E SEETQRLKRIAAA YDYDND RWADYWSNILIPPNLVSRSDV DHFKRKFYQR+I
Sbjct: 1  MAETSEETQRLKRIAAAAYDYDNDSRWADYWSNILIPPNLVSRSDVIDHFKRKFYQRHI 59

[Close]

BLAST of CmoCh01G004140 vs. ExPASy TrEMBL
Match: A0A6J1CQK8 (uncharacterized protein LOC111013250 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013250 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.8e-23
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          M E SEETQRLKRIAAA YDYDND RWADYWSNILIPPNLVSRSDV DHFKRKFYQR+I
Sbjct: 1  MAETSEETQRLKRIAAAAYDYDNDSRWADYWSNILIPPNLVSRSDVIDHFKRKFYQRHI 59

[Close]

BLAST of CmoCh01G004140 vs. ExPASy TrEMBL
Match: A0A7J9KM09 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_017655 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.9e-22
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 4  ISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYIVGSF 63
          +SE+ Q+LK+IAAA YDY+NDPRWADYWSNILIPP++ SRSDV DHFKRKFYQRYIV  F
Sbjct: 1  MSEDPQKLKKIAAAAYDYENDPRWADYWSNILIPPHMASRSDVVDHFKRKFYQRYIVLLF 60

Query: 64 SDL 67
           DL
Sbjct: 61 HDL 63

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: KAG7036743.1 (hypothetical protein SDJN02_00363 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI
Sbjct: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: XP_023525188.1 (uncharacterized protein LOC111788863 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI
Sbjct: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: XP_022998724.1 (transmembrane protein 33 homolog [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI
Sbjct: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: KAG6607043.1 (hypothetical protein SDJN03_00385, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI
Sbjct: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: XP_022949013.1 (uncharacterized protein LOC111452483 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI
Sbjct: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. TAIR 10
Match: AT3G02420.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 3.1e-22
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          M E  E++QRLK+IAAA +DY+ND RWADYWSNILIPP++ SR +V DHFKRKFYQRYI
Sbjct: 1  MAEGGEDSQRLKKIAAAAFDYENDARWADYWSNILIPPHMASRPEVVDHFKRKFYQRYI 59

The following BLAST results are available for this feature:

BLAST of CmoCh01G004140 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G004140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KF32	4.2e-27	100.00	transmembrane protein 33 homolog OS=Cucurbita maxima OX=3661 GN=LOC111493303 PE=...	[more]
A0A6J1GAW8	4.2e-27	100.00	uncharacterized protein LOC111452483 OS=Cucurbita moschata OX=3662 GN=LOC1114524...	[more]
A0A6J1CQJ0	4.8e-23	89.83	uncharacterized protein LOC111013250 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQK8	4.8e-23	89.83	uncharacterized protein LOC111013250 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A7J9KM09	6.9e-22	77.78	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_017655 PE=3...	[more]

BLAST of CmoCh01G004140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036743.1	8.7e-27	100.00	hypothetical protein SDJN02_00363 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023525188.1	8.7e-27	100.00	uncharacterized protein LOC111788863 [Cucurbita pepo subsp. pepo]	[more]
XP_022998724.1	8.7e-27	100.00	transmembrane protein 33 homolog [Cucurbita maxima]	[more]
KAG6607043.1	8.7e-27	100.00	hypothetical protein SDJN03_00385, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022949013.1	8.7e-27	100.00	uncharacterized protein LOC111452483 [Cucurbita moschata]	[more]

BLAST of CmoCh01G004140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02420.1	3.1e-22	72.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 3..59
None	No IPR available	PANTHER	PTHR30603:SF56	TRANSMEMBRANE PROTEIN 33 HOMOLOG	coord: 3..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G004140.1	CmoCh01G004140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane