CmoCh01G003970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 1952433 .. 1952827 (+)
RNA-Seq Expression	CmoCh01G003970
Synteny	CmoCh01G003970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCCGCACTGATGATACCCGCCATGATCATGGTTCTGCTACTCAACCCAACTGGATGTGACACTTCCGGTAAGTTTGGAATCACTTTTCGAAAAACAAATTAATTTATAATAATTTTATGAACTCATTGTATCTTCATCGCGACCCAGATGCAAAGCGAAGCCTGGTTGGAGACGAAGACATCGAGTCGGAGTTTCTTATGTCGTTGCACATCAGCCGGGTGTTGGCGGAATCCCAAGGGTTCGAAACCAGCGCCACTAGCAACGCTACCGAACCTGCCGTCGGGGAATGCGACAGGCCGCCACGCTACGACAGCTGCCTTGGCGAGAAAAGAAGTACTCCGCCGCCGGAAAATTGTGGACCCTTCAATCGTGAACATCCCTGTTAG

mRNA sequence

ATGGCTGCAGCCGCACTGATGATACCCGCCATGATCATGGTTCTGCTACTCAACCCAACTGGATGTGACACTTCCGATGCAAAGCGAAGCCTGGTTGGAGACGAAGACATCGAGTCGGAGTTTCTTATGTCGTTGCACATCAGCCGGGTGTTGGCGGAATCCCAAGGGTTCGAAACCAGCGCCACTAGCAACGCTACCGAACCTGCCGTCGGGGAATGCGACAGGCCGCCACGCTACGACAGCTGCCTTGGCGAGAAAAGAAGTACTCCGCCGCCGGAAAATTGTGGACCCTTCAATCGTGAACATCCCTGTTAG

Coding sequence (CDS)

ATGGCTGCAGCCGCACTGATGATACCCGCCATGATCATGGTTCTGCTACTCAACCCAACTGGATGTGACACTTCCGATGCAAAGCGAAGCCTGGTTGGAGACGAAGACATCGAGTCGGAGTTTCTTATGTCGTTGCACATCAGCCGGGTGTTGGCGGAATCCCAAGGGTTCGAAACCAGCGCCACTAGCAACGCTACCGAACCTGCCGTCGGGGAATGCGACAGGCCGCCACGCTACGACAGCTGCCTTGGCGAGAAAAGAAGTACTCCGCCGCCGGAAAATTGTGGACCCTTCAATCGTGAACATCCCTGTTAG

Protein sequence

MAAAALMIPAMIMVLLLNPTGCDTSDAKRSLVGDEDIESEFLMSLHISRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC

Homology

[Close]

BLAST of CmoCh01G003970 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.9e-27
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MAAAALMIPA--MIMVLLLNPTGC-----------DTSDAKRSLVGDEDIESEFLMSLHI 60
           MAAAA+MIPA   IM+LLLNPT             DTS A + L+GD+DI+SEFLM  HI
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           SR+LA SQ F+TS T++A + + G C+RPPRYDSCLG+K + PPPENCG FNR +PC
Sbjct: 61  SRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003970 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.6e-26
Identity = 67/117 (57.26%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MAAAALMIPA--MIMVLLLNPT-----------GCDTSDAKRSLVGDEDIESEFLMSLHI 60
           MAAAA++IPA   IM+LLLNPT             DTS A + L+GD+D++SEFLM  HI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           SR+LA SQ F+TS T++A + + G C RPPRYDSCLG+K + PPPENCG FNR +PC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003970 vs. ExPASy TrEMBL
Match: A0A0A0L711 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 3   AAALMIPA--MIMVLLLNPTGC-------------DTSDAKRSLVGDEDIESEFLMSLHI 62
           A ALMIPA   +M+++L PT C              +    + +V +EDI+S F+M  HI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           SR+LA+SQ FETS+T+NAT+ + GECDRPPRYDSCLG KR+TPPP+NC  FNREHPC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of CmoCh01G003970 vs. ExPASy TrEMBL
Match: A0A6J1CP71 (uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013278 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 65/118 (55.08%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 1   MAAAALMIPAM--IMVLLLNPTGCD------------TSDAKRSLVGDEDIESEFLMSLH 60
           MA AA+MIP +  + +LL NP  CD            T    + L+GDEDI SEFLM LH
Sbjct: 1   MATAAVMIPTVMALAILLPNPIDCDALTTSKRLLNNETWGNHKRLIGDEDIGSEFLMELH 60

Query: 61  ISRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           +SR+LAES  F+T  T NA   +V +C+RPPRYDSCLGEKR+TPP ENCG FNR +PC
Sbjct: 61  LSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRNTPPAENCGTFNRANPC 118

[Close]

BLAST of CmoCh01G003970 vs. ExPASy TrEMBL
Match: A0A0A0LCJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-23
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MAAAALMIPAMI--MVLLLN-PTGCD------------TSDAKRSLVGDEDIESEFLMSL 60
           M A+ALMIPA +  M+LLL+ P+ CD            +S   + ++G+ED+E EFLM  
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           HISR+LA S+ ++T++T+NA + + G CDRPPRYDSCLG+KR+ PPP NC P+NR +PC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of CmoCh01G003970 vs. NCBI nr
Match: KAG6607028.1 (hypothetical protein SDJN03_00370, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036724.1 hypothetical protein SDJN02_00344 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MAAAALMIPAMIMVLLLNPTGCDTSDAKRSLVGDEDIESEFLMSLHISRVLAESQGFETS 60
           MAAAALMI AMI++LLLNPTGCDTSDAKRSLVGDE+IESEFLMSLHISRVLAESQGFETS
Sbjct: 1   MAAAALMILAMIIILLLNPTGCDTSDAKRSLVGDENIESEFLMSLHISRVLAESQGFETS 60

Query: 61  ATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           ATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC
Sbjct: 61  ATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 104

[Close]

BLAST of CmoCh01G003970 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 130.6 bits (327), Expect = 8.0e-27
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MAAAALMIPA--MIMVLLLNPTGC-----------DTSDAKRSLVGDEDIESEFLMSLHI 60
           MAAAA+MIPA   IM+LLLNPT             DTS A + L+GD+DI+SEFLM  HI
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           SR+LA SQ F+TS T++A + + G C+RPPRYDSCLG+K + PPPENCG FNR +PC
Sbjct: 61  SRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003970 vs. NCBI nr
Match: KAG6607029.1 (hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036725.1 hypothetical protein SDJN02_00345, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 6.8e-26
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MAAAALMIPA--MIMVLLLNPT-----------GCDTSDAKRSLVGDEDIESEFLMSLHI 60
           MAAAA++IPA   IM+LLLNPT             DTS A + L+GD+DI+SEFLM  HI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           SR+LA SQ F+TS T++A + + G C RPPRYDSCLG+K + PPPENCG FNR +PC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003970 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 67/117 (57.26%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MAAAALMIPA--MIMVLLLNPT-----------GCDTSDAKRSLVGDEDIESEFLMSLHI 60
           MAAAA++IPA   IM+LLLNPT             DTS A + L+GD+D++SEFLM  HI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           SR+LA SQ F+TS T++A + + G C RPPRYDSCLG+K + PPPENCG FNR +PC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003970 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-25
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 1   MAAAALMIPA--MIMVLLLNPTGC-----------DTSDAKRSLVGDEDIESEFLMSLHI 60
           MA AA MIPA   IM+LLLNP              DTS A + L+GD+DI+SEFLM  HI
Sbjct: 1   MATAAAMIPAAMAIMILLLNPINSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRVLAESQGFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHPC 105
           SR+LA SQ F+TS T++A + + G C RPPRYDSCLG+K + PPPENCG FNR +PC
Sbjct: 61  SRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

The following BLAST results are available for this feature:

BLAST of CmoCh01G003970 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBP5	3.9e-27	58.97	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]
A0A6J1G927	5.6e-26	57.26	uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A0A0L711	2.8e-25	54.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]
A0A6J1CP71	2.4e-24	55.08	uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0LCJ4	5.8e-23	50.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]

BLAST of CmoCh01G003970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607028.1	1.3e-48	96.15	hypothetical protein SDJN03_00370, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998105.1	8.0e-27	58.97	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
KAG6607029.1	6.8e-26	58.12	hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948338.1	1.2e-25	57.26	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
XP_023523220.1	4.4e-25	57.26	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G003970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003970.1	CmoCh01G003970.1	mRNA