CmoCh01G003790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	EF hand calcium-binding protein family
Location	Cmo_Chr01: 1847595 .. 1848083 (+)
RNA-Seq Expression	CmoCh01G003790
Synteny	CmoCh01G003790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATGGCGAAGACGTCGGTTTCAAATCCAAGCTCCCCAAATCCTGGAGGAGCCTTGGGCTCCATGGACGAGGTTATCATGGTCTTCAAGAAGTTTGATAAGAACGGCGATGGCAAGATTTCCATCAAGGAGCTCGCTGCCGCCCTTGGGGAACTTGGCGGCAAGATCTCTGACGATGAGATCCGCCGCATTATGTCGGAGATTGACAAGGACGGTAATGGATTCATCGACCTAGACGAGTTCGCCGAGTTTCATCAGAACTCTTCTTCTACTGGCGGAGGTAGCAAAGATCTGCAAGACGCTTTTGATCTGTACGATGTCGATAAGAACGGCCTAATCTCGGCCAAGGAGTTGCACTCTGTTCTCAAGCGCCTCGGTGAAAAATGTAGCCTCAAAGATTGTTGCCGGATGATCAGTTCCGTCGATGTTGACGGTGACGGCCATGTAAATTTCGAGGAGTTCAAGAAGATGATGACTCGCTCATAG

mRNA sequence

ATGCCTATGGCGAAGACGTCGGTTTCAAATCCAAGCTCCCCAAATCCTGGAGGAGCCTTGGGCTCCATGGACGAGGTTATCATGGTCTTCAAGAAGTTTGATAAGAACGGCGATGGCAAGATTTCCATCAAGGAGCTCGCTGCCGCCCTTGGGGAACTTGGCGGCAAGATCTCTGACGATGAGATCCGCCGCATTATGTCGGAGATTGACAAGGACGGTAATGGATTCATCGACCTAGACGAGTTCGCCGAGTTTCATCAGAACTCTTCTTCTACTGGCGGAGGTAGCAAAGATCTGCAAGACGCTTTTGATCTGTACGATGTCGATAAGAACGGCCTAATCTCGGCCAAGGAGTTGCACTCTGTTCTCAAGCGCCTCGGTGAAAAATGTAGCCTCAAAGATTGTTGCCGGATGATCAGTTCCGTCGATGTTGACGGTGACGGCCATGTAAATTTCGAGGAGTTCAAGAAGATGATGACTCGCTCATAG

Coding sequence (CDS)

ATGCCTATGGCGAAGACGTCGGTTTCAAATCCAAGCTCCCCAAATCCTGGAGGAGCCTTGGGCTCCATGGACGAGGTTATCATGGTCTTCAAGAAGTTTGATAAGAACGGCGATGGCAAGATTTCCATCAAGGAGCTCGCTGCCGCCCTTGGGGAACTTGGCGGCAAGATCTCTGACGATGAGATCCGCCGCATTATGTCGGAGATTGACAAGGACGGTAATGGATTCATCGACCTAGACGAGTTCGCCGAGTTTCATCAGAACTCTTCTTCTACTGGCGGAGGTAGCAAAGATCTGCAAGACGCTTTTGATCTGTACGATGTCGATAAGAACGGCCTAATCTCGGCCAAGGAGTTGCACTCTGTTCTCAAGCGCCTCGGTGAAAAATGTAGCCTCAAAGATTGTTGCCGGATGATCAGTTCCGTCGATGTTGACGGTGACGGCCATGTAAATTTCGAGGAGTTCAAGAAGATGATGACTCGCTCATAG

Protein sequence

MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS

Homology

[Close]

BLAST of CmoCh01G003790 vs. ExPASy Swiss-Prot
Match: Q9C8Y1 (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana OX=3702 GN=CML23 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-41
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 20  LGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRIMSEIDKDGNGFIDL 79
           LGSM+++  VF++FDKN DGKISI EL   +G L    S +E + +M E D DGNGFIDL
Sbjct: 10  LGSMEDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDL 69

Query: 80  DEFAEFHQ--NSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSVLKRLGEKCSLKDCCR 139
           DEF    Q  + SS     +DL++AFDLYD+D+NG ISA ELHSV+K LGEKCS++DC R
Sbjct: 70  DEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQR 129

Query: 140 MISSVDVDGDGHVNFEEFKKMM 160
           MI+ VD DGDG V+FEEFKKMM
Sbjct: 130 MINKVDSDGDGCVDFEEFKKMM 151

[Close]

BLAST of CmoCh01G003790 vs. ExPASy Swiss-Prot
Match: P25070 (Calcium-binding protein CML24 OS=Arabidopsis thaliana OX=3702 GN=CML24 PE=2 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-40
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 0


Query: 20  LGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRIMSEIDKDGNGFIDL 79
           LGSMD++  VF++FDKNGDGKIS+ EL   +  L    S +E   +M + D DGNGFIDL
Sbjct: 12  LGSMDDIKKVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDL 71

Query: 80  DEFAEFHQNSSSTGGGSK----DLQDAFDLYDVDKNGLISAKELHSVLKRLGEKCSLKDC 139
           DEF    Q     GG ++    DL++AF+LYD+D NG ISAKELHSV+K LGEKCS++DC
Sbjct: 72  DEFVALFQIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLGEKCSVQDC 131

Query: 140 CRMISSVDVDGDGHVNFEEFKKMMT 161
            +MIS VD+DGDG VNF+EFKKMM+
Sbjct: 132 KKMISKVDIDGDGCVNFDEFKKMMS 156

[Close]

BLAST of CmoCh01G003790 vs. ExPASy Swiss-Prot
Match: Q9LE22 (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.6e-38
Identity = 80/157 (50.96%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 9   SNPSSPNPGGA---LGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRI 68
           +NP +  P  A   + + +E+  VF +FD NGDGKIS+ EL      +G   ++ E+ R+
Sbjct: 4   ANPETAKPTPATVDMANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRV 63

Query: 69  MSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSVLKR 128
           + E+D D +G+I+LDEF+   ++SSS    + +++DAFDLYD DKNGLISA ELH VL R
Sbjct: 64  LEEVDTDRDGYINLDEFSTLCRSSSS----AAEIRDAFDLYDQDKNGLISASELHQVLNR 123

Query: 129 LGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           LG  CS++DC RMI  VD DGDG+VNFEEF+KMMT S
Sbjct: 124 LGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMMTSS 156

[Close]

BLAST of CmoCh01G003790 vs. ExPASy Swiss-Prot
Match: Q0DJV6 (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 GN=CML18 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.7e-37
Identity = 80/149 (53.69%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 23  MDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRIMSEIDKDGNGFIDLDEF 82
           M E+  VF+++D NGDGKIS +ELA+ L  LG  +   E+RR+M E+D D +GF+DL EF
Sbjct: 3   MAELEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEF 62

Query: 83  AEFHQNSS----STGGGSKD--------LQDAFDLYDVDKNGLISAKELHSVLKRLGEKC 142
           A FH   +      GG +KD        L++AF +YD D NG ISA+ELH VL++LG+KC
Sbjct: 63  AAFHCGPTPAHGGKGGDAKDQEAASEAELREAFRMYDADSNGKISARELHRVLRQLGDKC 122

Query: 143 SLKDCCRMISSVDVDGDGHVNFEEFKKMM 160
           S+ DC RMI SVD DGDG VNF+EFKKMM
Sbjct: 123 SVADCSRMIRSVDADGDGCVNFDEFKKMM 151

[Close]

BLAST of CmoCh01G003790 vs. ExPASy Swiss-Prot
Match: Q9M7R0 (Calcium-binding allergen Ole e 8 OS=Olea europaea OX=4146 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-35
Identity = 81/148 (54.73%), Postives = 100/148 (67.57%), Query Frame = 0


Query: 16  PGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRIMSEIDKDGNG 75
           P   L   +EV  VF +FD NGDGKIS  ELA  L  LG   S +EI RIM EID D +G
Sbjct: 11  PSVYLQEPNEVQGVFNRFDANGDGKISGDELAGVLKALGSNTSKEEIGRIMEEIDTDKDG 70

Query: 76  FIDLDEFAEFHQNSSS---TGGGSKDLQDAFDLYDVDKNGLISAKELHSVLKRLGEKCSL 135
           FI++ EFA F +  +    + GG  +L++AF+LYD D NGLIS+ ELH +L RLGE+ + 
Sbjct: 71  FINVQEFAAFVKAETDPYPSSGGENELKEAFELYDQDHNGLISSVELHKILTRLGERYAE 130

Query: 136 KDCCRMISSVDVDGDGHVNFEEFKKMMT 161
            DC  MI SVD DGDG+V+FEEFKKMMT
Sbjct: 131 HDCVEMIKSVDSDGDGYVSFEEFKKMMT 158

[Close]

BLAST of CmoCh01G003790 vs. ExPASy TrEMBL
Match: A0A6J1G9H5 (probable calcium-binding protein CML23 OS=Cucurbita moschata OX=3662 GN=LOC111452166 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.4e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60
           MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD
Sbjct: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60

Query: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH 120
           EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH
Sbjct: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH 120

Query: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS
Sbjct: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 162

[Close]

BLAST of CmoCh01G003790 vs. ExPASy TrEMBL
Match: A0A6J1KB05 (probable calcium-binding protein CML23 OS=Cucurbita maxima OX=3661 GN=LOC111493297 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.2e-84
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60
           MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD
Sbjct: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60

Query: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH 120
           EIRRIMSEIDKDGNGFIDLDEFAEFHQN SSTGGGSKDLQDAFDL+DVDKNGLISAKELH
Sbjct: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNFSSTGGGSKDLQDAFDLFDVDKNGLISAKELH 120

Query: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS
Sbjct: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 162

[Close]

BLAST of CmoCh01G003790 vs. ExPASy TrEMBL
Match: A0A6J1CNU4 (probable calcium-binding protein CML23 OS=Momordica charantia OX=3673 GN=LOC111013180 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.6e-74
Identity = 141/162 (87.04%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60
           MPMAK SVS+PSS N GGALGSMDEV  VF KFDKNGDGKIS+ EL  ALGELGGK+S D
Sbjct: 1   MPMAKKSVSDPSSTNLGGALGSMDEVTKVFNKFDKNGDGKISVNELGDALGELGGKVSSD 60

Query: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH 120
           E+RRIM+EIDKDG+GFIDLDEFAEFHQ+ S+TGGG+KDLQDAFDLYD+DKNGLISAKELH
Sbjct: 61  EVRRIMAEIDKDGDGFIDLDEFAEFHQDVSATGGGNKDLQDAFDLYDIDKNGLISAKELH 120

Query: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS
Sbjct: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 162

[Close]

BLAST of CmoCh01G003790 vs. ExPASy TrEMBL
Match: A0A6J1F6R4 (calcium-binding protein CML24-like OS=Cucurbita moschata OX=3662 GN=LOC111441384 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.9e-66
Identity = 132/160 (82.50%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 3   MAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEI 62
           MAK SVSNP      GALGSMDEV+ +FKKFDKNGDGKISI EL AALGELGG+IS DEI
Sbjct: 1   MAKKSVSNP------GALGSMDEVMKIFKKFDKNGDGKISISELGAALGELGGRISSDEI 60

Query: 63  RRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSV 122
           RRIM EID DG+GFIDLDEF  FHQ++   GGG+KDLQDAFDLYD+DKNGLISAKELH V
Sbjct: 61  RRIMLEIDTDGDGFIDLDEFTAFHQDAYPEGGGNKDLQDAFDLYDMDKNGLISAKELHFV 120

Query: 123 LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMM+RS
Sbjct: 121 LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMSRS 154

[Close]

BLAST of CmoCh01G003790 vs. ExPASy TrEMBL
Match: A0A6J1J811 (calcium-binding protein CML24-like OS=Cucurbita maxima OX=3661 GN=LOC111482109 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 131/160 (81.88%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 3   MAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEI 62
           MAK SVSNP      GALGSMDEV+ +FKKFDKNGDGKIS+ EL AALGELGGKIS DE 
Sbjct: 1   MAKKSVSNP------GALGSMDEVMKIFKKFDKNGDGKISVSELGAALGELGGKISSDET 60

Query: 63  RRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSV 122
           RRIM EID DG+GFIDLDEFA FH+ +   GGG+KDLQDAFDLYD+DKNGLISAKELH V
Sbjct: 61  RRIMLEIDTDGDGFIDLDEFAAFHREAYPDGGGNKDLQDAFDLYDMDKNGLISAKELHFV 120

Query: 123 LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMM+RS
Sbjct: 121 LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMSRS 154

[Close]

BLAST of CmoCh01G003790 vs. NCBI nr
Match: XP_022948508.1 (probable calcium-binding protein CML23 [Cucurbita moschata] >XP_023524703.1 probable calcium-binding protein CML23 [Cucurbita pepo subsp. pepo] >KAG6607012.1 putative calcium-binding protein CML23, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036709.1 putative calcium-binding protein CML23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60
           MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD
Sbjct: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60

Query: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH 120
           EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH
Sbjct: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH 120

Query: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS
Sbjct: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 162

[Close]

BLAST of CmoCh01G003790 vs. NCBI nr
Match: XP_022998716.1 (probable calcium-binding protein CML23 [Cucurbita maxima])

HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60
           MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD
Sbjct: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60

Query: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH 120
           EIRRIMSEIDKDGNGFIDLDEFAEFHQN SSTGGGSKDLQDAFDL+DVDKNGLISAKELH
Sbjct: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNFSSTGGGSKDLQDAFDLFDVDKNGLISAKELH 120

Query: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS
Sbjct: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 162

[Close]

BLAST of CmoCh01G003790 vs. NCBI nr
Match: XP_022143269.1 (probable calcium-binding protein CML23 [Momordica charantia])

HSP 1 Score: 286.6 bits (732), Expect = 1.4e-73
Identity = 141/162 (87.04%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 1   MPMAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDD 60
           MPMAK SVS+PSS N GGALGSMDEV  VF KFDKNGDGKIS+ EL  ALGELGGK+S D
Sbjct: 1   MPMAKKSVSDPSSTNLGGALGSMDEVTKVFNKFDKNGDGKISVNELGDALGELGGKVSSD 60

Query: 61  EIRRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELH 120
           E+RRIM+EIDKDG+GFIDLDEFAEFHQ+ S+TGGG+KDLQDAFDLYD+DKNGLISAKELH
Sbjct: 61  EVRRIMAEIDKDGDGFIDLDEFAEFHQDVSATGGGNKDLQDAFDLYDIDKNGLISAKELH 120

Query: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS
Sbjct: 121 SVLKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 162

[Close]

BLAST of CmoCh01G003790 vs. NCBI nr
Match: XP_038879983.1 (probable calcium-binding protein CML23 [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 3.2e-67
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 3   MAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEI 62
           MAK + ++ S  NPG +LGSMD+VI VF KFDKNGDGKIS+ EL AAL ELGGKIS DEI
Sbjct: 1   MAKKN-NSLSISNPGSSLGSMDDVIKVFNKFDKNGDGKISVNELGAALSELGGKISTDEI 60

Query: 63  RRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSV 122
           RRIMSEIDKDG+GFIDLDEFAEFHQ++SS+ G +KDLQDAFDLYD+DKNGLISAKELHSV
Sbjct: 61  RRIMSEIDKDGDGFIDLDEFAEFHQDASSSSGCNKDLQDAFDLYDIDKNGLISAKELHSV 120

Query: 123 LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS
Sbjct: 121 LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 159

[Close]

BLAST of CmoCh01G003790 vs. NCBI nr
Match: XP_023526443.1 (calcium-binding protein CML24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66
Identity = 133/160 (83.12%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 3   MAKTSVSNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEI 62
           MAK SVSNP      GALGSMDEV+ +FKKFDKNGDGKISI EL AALGELGGKIS DEI
Sbjct: 1   MAKKSVSNP------GALGSMDEVMKIFKKFDKNGDGKISISELGAALGELGGKISSDEI 60

Query: 63  RRIMSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSV 122
           RRIM EID DG+GFIDLDEF  FHQ++   GGG+KDLQDAFDLYD+DKNGLISAKELH V
Sbjct: 61  RRIMLEIDTDGDGFIDLDEFTAFHQDAYPEGGGNKDLQDAFDLYDMDKNGLISAKELHFV 120

Query: 123 LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMM+RS
Sbjct: 121 LKRLGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMSRS 154

[Close]

BLAST of CmoCh01G003790 vs. TAIR 10
Match: AT1G66400.1 (calmodulin like 23 )

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-42
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 20  LGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRIMSEIDKDGNGFIDL 79
           LGSM+++  VF++FDKN DGKISI EL   +G L    S +E + +M E D DGNGFIDL
Sbjct: 10  LGSMEDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDL 69

Query: 80  DEFAEFHQ--NSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSVLKRLGEKCSLKDCCR 139
           DEF    Q  + SS     +DL++AFDLYD+D+NG ISA ELHSV+K LGEKCS++DC R
Sbjct: 70  DEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQR 129

Query: 140 MISSVDVDGDGHVNFEEFKKMM 160
           MI+ VD DGDG V+FEEFKKMM
Sbjct: 130 MINKVDSDGDGCVDFEEFKKMM 151

[Close]

BLAST of CmoCh01G003790 vs. TAIR 10
Match: AT5G37770.1 (EF hand calcium-binding protein family )

HSP 1 Score: 167.5 bits (423), Expect = 8.6e-42
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 0


Query: 20  LGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRIMSEIDKDGNGFIDL 79
           LGSMD++  VF++FDKNGDGKIS+ EL   +  L    S +E   +M + D DGNGFIDL
Sbjct: 12  LGSMDDIKKVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDL 71

Query: 80  DEFAEFHQNSSSTGGGSK----DLQDAFDLYDVDKNGLISAKELHSVLKRLGEKCSLKDC 139
           DEF    Q     GG ++    DL++AF+LYD+D NG ISAKELHSV+K LGEKCS++DC
Sbjct: 72  DEFVALFQIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLGEKCSVQDC 131

Query: 140 CRMISSVDVDGDGHVNFEEFKKMMT 161
            +MIS VD+DGDG VNF+EFKKMM+
Sbjct: 132 KKMISKVDIDGDGCVNFDEFKKMMS 156

[Close]

BLAST of CmoCh01G003790 vs. TAIR 10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 157.9 bits (398), Expect = 6.8e-39
Identity = 80/157 (50.96%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 9   SNPSSPNPGGA---LGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRI 68
           +NP +  P  A   + + +E+  VF +FD NGDGKIS+ EL      +G   ++ E+ R+
Sbjct: 4   ANPETAKPTPATVDMANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRV 63

Query: 69  MSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSVLKR 128
           + E+D D +G+I+LDEF+   ++SSS    + +++DAFDLYD DKNGLISA ELH VL R
Sbjct: 64  LEEVDTDRDGYINLDEFSTLCRSSSS----AAEIRDAFDLYDQDKNGLISASELHQVLNR 123

Query: 129 LGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           LG  CS++DC RMI  VD DGDG+VNFEEF+KMMT S
Sbjct: 124 LGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMMTSS 156

[Close]

BLAST of CmoCh01G003790 vs. TAIR 10
Match: AT1G18210.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 157.9 bits (398), Expect = 6.8e-39
Identity = 80/157 (50.96%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 9   SNPSSPNPGGA---LGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRI 68
           +NP +  P  A   + + +E+  VF +FD NGDGKIS+ EL      +G   ++ E+ R+
Sbjct: 4   ANPETAKPTPATVDMANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRV 63

Query: 69  MSEIDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSVLKR 128
           + E+D D +G+I+LDEF+   ++SSS    + +++DAFDLYD DKNGLISA ELH VL R
Sbjct: 64  LEEVDTDRDGYINLDEFSTLCRSSSS----AAEIRDAFDLYDQDKNGLISASELHQVLNR 123

Query: 129 LGEKCSLKDCCRMISSVDVDGDGHVNFEEFKKMMTRS 163
           LG  CS++DC RMI  VD DGDG+VNFEEF+KMMT S
Sbjct: 124 LGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMMTSS 156

[Close]

BLAST of CmoCh01G003790 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-35
Identity = 75/152 (49.34%), Postives = 104/152 (68.42%), Query Frame = 0


Query: 9   SNPSSPNPGGALGSMDEVIMVFKKFDKNGDGKISIKELAAALGELGGKISDDEIRRIMSE 68
           +N  S N      +  E+  VF KFD NGDGKIS+ EL      +G   +++E+ R++ E
Sbjct: 4   TNLESTNKSTTPSTDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDE 63

Query: 69  IDKDGNGFIDLDEFAEFHQNSSSTGGGSKDLQDAFDLYDVDKNGLISAKELHSVLKRLGE 128
           ID D +GFI+ +EFA   ++SSS    + ++++AFDLYD +KNGLIS+ E+H VL RLG 
Sbjct: 64  IDIDCDGFINQEEFATICRSSSS----AVEIREAFDLYDQNKNGLISSSEIHKVLNRLGM 123

Query: 129 KCSLKDCCRMISSVDVDGDGHVNFEEFKKMMT 161
            CS++DC RMI  VD DGDG+VNFEEF+KMM+
Sbjct: 124 TCSVEDCVRMIGHVDTDGDGNVNFEEFQKMMS 151

The following BLAST results are available for this feature:

BLAST of CmoCh01G003790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8Y1	1.9e-41	59.86	Probable calcium-binding protein CML23 OS=Arabidopsis thaliana OX=3702 GN=CML23 ...	[more]
P25070	1.2e-40	57.93	Calcium-binding protein CML24 OS=Arabidopsis thaliana OX=3702 GN=CML24 PE=2 SV=2	[more]
Q9LE22	9.6e-38	50.96	Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 ...	[more]
Q0DJV6	4.7e-37	53.69	Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9M7R0	4.4e-35	54.73	Calcium-binding allergen Ole e 8 OS=Olea europaea OX=4146 PE=1 SV=1	[more]

BLAST of CmoCh01G003790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9H5	6.4e-85	100.00	probable calcium-binding protein CML23 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KB05	9.2e-84	98.77	probable calcium-binding protein CML23 OS=Cucurbita maxima OX=3661 GN=LOC1114932...	[more]
A0A6J1CNU4	6.6e-74	87.04	probable calcium-binding protein CML23 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1F6R4	3.9e-66	82.50	calcium-binding protein CML24-like OS=Cucurbita moschata OX=3662 GN=LOC111441384...	[more]
A0A6J1J811	1.1e-65	81.88	calcium-binding protein CML24-like OS=Cucurbita maxima OX=3661 GN=LOC111482109 P...	[more]

BLAST of CmoCh01G003790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948508.1	1.3e-84	100.00	probable calcium-binding protein CML23 [Cucurbita moschata] >XP_023524703.1 prob...	[more]
XP_022998716.1	1.9e-83	98.77	probable calcium-binding protein CML23 [Cucurbita maxima]	[more]
XP_022143269.1	1.4e-73	87.04	probable calcium-binding protein CML23 [Momordica charantia]	[more]
XP_038879983.1	3.2e-67	83.75	probable calcium-binding protein CML23 [Benincasa hispida]	[more]
XP_023526443.1	3.6e-66	83.13	calcium-binding protein CML24-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G003790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66400.1	1.3e-42	59.86	calmodulin like 23	[more]
AT5G37770.1	8.6e-42	57.93	EF hand calcium-binding protein family	[more]
AT1G18210.1	6.8e-39	50.96	Calcium-binding EF-hand family protein	[more]
AT1G18210.2	6.8e-39	50.96	Calcium-binding EF-hand family protein	[more]
AT1G73630.1	2.7e-35	49.34	EF hand calcium-binding protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 134..162 e-value: 2.1E-4 score: 30.6 coord: 98..126 e-value: 2.8E-5 score: 33.5 coord: 61..89 e-value: 2.4E-5 score: 33.7 coord: 25..53 e-value: 7.9E-6 score: 35.4
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 97..159 e-value: 2.9E-12 score: 46.9 coord: 27..85 e-value: 7.0E-15 score: 55.2
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 94..129 score: 14.569197
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 21..56 score: 14.90394
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 130..162 score: 13.174425
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 57..92 score: 13.927603
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 98..160 e-value: 2.10222E-19 score: 74.8917
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 25..87 e-value: 7.94874E-20 score: 76.0473
None	No IPR available	GENE3D	1.10.238.10		coord: 93..162 e-value: 6.9E-23 score: 82.7
None	No IPR available	GENE3D	1.10.238.10		coord: 12..92 e-value: 3.9E-21 score: 77.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10891:SF794	CALCIUM-BINDING PROTEIN CML23-RELATED	coord: 19..161
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 19..161
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 143..155
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 70..82
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 34..46
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 107..119
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 23..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003790.1	CmoCh01G003790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005509	calcium ion binding