CmoCh01G002630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 1194871 .. 1197239 (+)
RNA-Seq Expression	CmoCh01G002630
Synteny	CmoCh01G002630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGATTGGAATACAAATTGGTTACTGTACTGTACAGAAAGATCAGCTTTGTGCATAAATTTTGTACCACTGCAAGGCGCTATCAAGACTTTTGGAGGCTCTTGGTTGAACTCTGTACATAGTAGTTATCCTGACAAACTTGATCCAGGAACATTTGCTCCCAAGTGTAGGCCCATGTTTCTGACCAGGTTAGTGACATCTAGTCCTTATTCTTGTTATTAATTTTGCTTAACTAGTTTGAAATTACATTTTTATTCTATGATTAAGAAGCTTCTCATAGCATTTCATGTAGCTAGATCAGAATGAATAATTCACGTACTCTTCAACTCCTGAATCTTTTATGGGTGGTTAAAGTTTTAATCGAAGGGAAAGTAAGGGCAAGGGAAGATCGGGGGGTAACTAGTATGTGTCCCTTAATTCATCACCAAAATTTATTTGTTTGTGATGGGGCCTTCAATATTTGGCTTAAAATTTTGAAATAAATGTTAATAAACTCACTTCTAATTGTTTTATAAACGAAGTCCTAAACTAAGTTGGTTGTACATTAATGTTCATTGAGAGTTCAGATTTTTAAAGTTCTGAAATAATTGCTTCTGGGGCTGTACCAGTTAGCTTTATCACGAAAAAACCACTTTTGAGAGACTCCACAATAACACGTCTTGCAATATATCTATGTTCCTTGTTACCTCTTAGAAGAGGGAATCTCTAAAGCCAATTAGCAAATAAAAACCTCCACAATCTTCTGCCTTGGAGATTTTTATCCAACTTGAAGGATTTCTACAATATGCTGACAGCTTTCTTGGTAAGCTTACAGATAGATCGGCACACATGAAATTGCTTGAATAAGCCAAAAGGTAGCAGCTTCATCTTGACTAGAGCTGTGGAAGCTAAGTTGGGGAAAGATTTTATTATAACCTGCAAGTACTTGAGAGATCATCCTTTTGTTTCCTGCAATTAGTATTTTTGAAGGGAAAAATCCTCTTAGATGGGACAAGTTGGTTTTCATGTTTGCGCCCAAAGAATCTAGCCTTGTTGTCAACATTGACTAGTGGCTTTGGAGGTTTTAAGTTGGGATGGATTCCCAAAATCCTAGATTCCTAATAGAGTGAGATGTTGACTAGATCATTTGTTTACAGGATGTGCTTGTGCGGAAATTCGTTAGATGTTAATAAATATCACTGGAAGTTGGTCCCGTTTCATCTGTGTGCTGGAAACACTCAATGAAGTACTGGATCGTTGAGATATAAAGGATTAAGGCTTGGGGCCCTTTTATTCCTCTGCTTTTTTACTCTTACATGAATGCTTTTTGCCAAAGGCTATATTCAGTGCTACATGGTAGAAATGTTCAAACAAATGACCAAACCGTAGTAACCATCTTCCTCTCTGACCTAATTCTCTCTCCGCCTCTAGTACTCATGTGTTGACAATTTCTAAAACCATTACTATTTTGTCTCTCTTGCTTCAATCTTATCAGAGATCGTTGTGTTTCTCCTATTAAATAAGTTTTAGGCTATGAATAAGAGCATGTTCGCTTATGTTCATATGGAATTTTTATGTACAATTAGTCATTTGGATGGCATGCTACCCAAGACCTGCCAAGAAATAAAATTGCTTCTATGCATATGATGGTTTGGCATGCTTTAGATGATATTATATATTCGCTAATGATATCATATCCTGGCCGTATAATATGACAGGTTTTGATAGATTTTTATGATAGAGAGAGAGAGAGAGACGAGCAACTTTTGGGATTCTTTGTTTACTTAGCCGAGTAAAGAAAAGATCGAGTCGGATTATTATATCCAAGGAGGAGGTTGCTCGCAGCTGCATAGTTGAGATAGACTATAATTTAACATGGATTTTTGTGCCAAGACCGTGGCTGATCCTTCCTTGTTATGCAGACTCCGGATGTAAAGGTAGTCCCCAGATACTCAAAAAAGAATTTTCAGATCCTATGTAACACAATACTTTCTTTACATATTGTACATGATATCATATAACCCTTTTCTCACCTCACATCCTCGAGTATTTTCTAAAATAATTTCTTTATGATCTAGAAATCATCTCAGTCTGAATATAGTTGTTCAATTATGAGTTTCATTTTCCCACATTTTGATTCTGACCCTCGAGACCTGCTGATGGTTTAAACAGCTCTTTATTTGCTTGGCCTTTTTCATTATATTTTCTTGCATCTGATAGATCTATTATTAGACCATTCTTCTGCTTTGAAACTTAGGCTGTATGTATGCATAAATTTTGGTTGGGGGAGGAGAATTCATTACTTGGTGCAGTTTAAACAAGATTCTAAAACAGCACAGTACGGGTTATTGGACTTTGGTAATCAATCAATCATGAGTGATGAGTGA

mRNA sequence

ATGTGGGATTGGAATACAAATTGGTTACTGTACTGTACAGAAAGATCAGCTTTGTGCATAAATTTTGTACCACTGCAAGGCGCTATCAAGACTTTTGGAGGCTCTTGGTTGAACTCTGTACATAGTAGTTATCCTGACAAACTTGATCCAGGAACATTTGCTCCCAAGTGTAGGCCCATGTTTCTGACCAGCCGAGTAAAGAAAAGATCGAGTCGGATTATTATATCCAAGGAGGAGGTTGCTCGCAGCTGCATAGTTGAGATAGACTATAATTTAACATGGATTTTTGTGCCAAGACCGTGGCTGATCCTTCCTTGTTATGCAGACTCCGGATGTAAAGGTAGTCCCCAGATACTCAAAAAAGAATTTTCAGATCCTATGCTGTATGTATGCATAAATTTTGGTTGGGGGAGGAGAATTCATTACTTGGTGCAGTTTAAACAAGATTCTAAAACAGCACAGTACGGGTTATTGGACTTTGGTAATCAATCAATCATGAGTGATGAGTGA

Coding sequence (CDS)

ATGTGGGATTGGAATACAAATTGGTTACTGTACTGTACAGAAAGATCAGCTTTGTGCATAAATTTTGTACCACTGCAAGGCGCTATCAAGACTTTTGGAGGCTCTTGGTTGAACTCTGTACATAGTAGTTATCCTGACAAACTTGATCCAGGAACATTTGCTCCCAAGTGTAGGCCCATGTTTCTGACCAGCCGAGTAAAGAAAAGATCGAGTCGGATTATTATATCCAAGGAGGAGGTTGCTCGCAGCTGCATAGTTGAGATAGACTATAATTTAACATGGATTTTTGTGCCAAGACCGTGGCTGATCCTTCCTTGTTATGCAGACTCCGGATGTAAAGGTAGTCCCCAGATACTCAAAAAAGAATTTTCAGATCCTATGCTGTATGTATGCATAAATTTTGGTTGGGGGAGGAGAATTCATTACTTGGTGCAGTTTAAACAAGATTCTAAAACAGCACAGTACGGGTTATTGGACTTTGGTAATCAATCAATCATGAGTGATGAGTGA

Protein sequence

MWDWNTNWLLYCTERSALCINFVPLQGAIKTFGGSWLNSVHSSYPDKLDPGTFAPKCRPMFLTSRVKKRSSRIIISKEEVARSCIVEIDYNLTWIFVPRPWLILPCYADSGCKGSPQILKKEFSDPMLYVCINFGWGRRIHYLVQFKQDSKTAQYGLLDFGNQSIMSDE

Homology

[Close]

BLAST of CmoCh01G002630 vs. ExPASy TrEMBL
Match: A0A0A0LEP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653430 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 10   LYCTERSALCINFVPLQGAIKTFGGSWLNSVHSSYPDKLDPGTFAPKCRPMFLTSRVKKR 69
            LYC ERSALCIN V L GA+ TFGGS LNSVHSSYPDKLDPGTFAPKCRPMFLT   +  
Sbjct: 1505 LYCKERSALCINSVQLDGAVNTFGGSRLNSVHSSYPDKLDPGTFAPKCRPMFLTWTTEYL 1564

Query: 70   SSRIIISKEEVARSCIVEIDYNLTW 95
                ++   +   S  +E  YN  W
Sbjct: 1565 RVMDLVGTRQEVVSLKIEKTYNHVW 1589

[Close]

BLAST of CmoCh01G002630 vs. NCBI nr
Match: KAG6606903.1 (Protein HUA2-LIKE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 6.7e-31
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MWDWNTNWLLYCTERSALCINFVPLQGAIKTFGGSWLNSVHSSYPDKLDPGTFAPKCRPM 60
            MW+WNTNWLLYCTERSALCINFVPLQGA+KTFGGSWLNSVHSSYPDKLDPGTFAPKCRPM
Sbjct: 1453 MWNWNTNWLLYCTERSALCINFVPLQGAVKTFGGSWLNSVHSSYPDKLDPGTFAPKCRPM 1512

Query: 61   FLT 64
            FLT
Sbjct: 1513 FLT 1515

[Close]

BLAST of CmoCh01G002630 vs. NCBI nr
Match: KAG7018055.1 (Protein HUA2-LIKE 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 10   LYCTERSALCINFVPLQGAIKTFGGSWLNSVHSSYPDKLDPGTFAPKCRPMFLT 64
            LYC ERSALCIN V L+GA+KTFGGSWLN VH SY DKLDP T +PK  PMFLT
Sbjct: 1444 LYCKERSALCINSVQLEGAVKTFGGSWLNCVH-SYADKLDPRTCSPKRSPMFLT 1496

[Close]

BLAST of CmoCh01G002630 vs. NCBI nr
Match: KAG6581550.1 (ENHANCER OF AG-4 protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 10   LYCTERSALCINFVPLQGAIKTFGGSWLNSVHSSYPDKLDPGTFAPKCRPMFLT 64
            LYC ERSALCIN V L+GA+KTFGGSWLN VH SY DKLDP T +PK  PMFLT
Sbjct: 1506 LYCKERSALCINSVQLEGAVKTFGGSWLNCVH-SYADKLDPRTCSPKRSPMFLT 1558

The following BLAST results are available for this feature:

BLAST of CmoCh01G002630 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEP0	2.0e-20	61.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653430 PE=4 SV=1	[more]

BLAST of CmoCh01G002630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606903.1	6.7e-31	96.83	Protein HUA2-LIKE 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7018055.1	1.7e-13	75.93	Protein HUA2-LIKE 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6581550.1	1.7e-13	75.93	ENHANCER OF AG-4 protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh01G002630 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G002630.1	CmoCh01G002630.1	mRNA